cluster # 8652

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Anopheles gambiae
cluster # 8652 cluster # 8652 Sequences # 11 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8652#0 length = 568 sequences # 1

consensus_8652#1 length = 480 sequences # 9
consensus_8652#2 length = 353 sequences # 1

consensusID : consensus_8652#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 568
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGTGGTCCGGGGAGTCTCTCTCTCTCTCTCTCTCTCTCCATCCCGATCGATACAATTGTTTGAACAATCTTACGCGCTTACCTTGCGCCGAGTGCGTATGAGTCACGTGTCTCCGATTAGACCGTGGCGTTCAGCAATGCAGTCCAAAACCCGAGAGATGTGTTGAATTTCCGCGCACGCACGCACAGTTATGTCGCCTTTTGTTTGAATAAAAAAATGCATTACATCAAACGCTGCAGAACCTTCTAGTATGATTAGTGTGTGTAATAGTAGCTTGTTAATATTCCCGACAAGTAGCCCCGTATTGATTGAACGGTGGCCTCTCCCCACGAAAGCGTCTTTGTGCACTTGACATTGAGCGCGGTTTGACAGTCTTCGGTGGGCTGGAACTGCCCTACCCACACCCGTTTCCGGTCATCAAGTGCGACGATGATTTAATAGTCCCCCCTTTCCCCTTTTCTTTCTTTATCACCGCTCCAGCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG]

[+] EMBL BM648416             [CCGCCCACGCGTCCGCCCACGCGTCCGGTGGTCCGGGGAGTCTCTCTCTCTCTCTCTCTCTCTCCATCCCGATCGATACAATTGTTTGAACAATCTTACGCGCTTACCTTGCGCCGAGTGCGTATGAGTCACGTGTCTCCGATTAGACCGTGGCGTTCAGCAATGCAGTCCAAAACCCGAGAGATGTGTTGAATTTCCGCGCACGCACGCACAGTTATGTCGCCTTTTGTTTGAATAAAAAAATGCATTACATCAAACGCTGCAGAACCTTCTAGTATGATTAGTGTGTGTAATAGTAGCTTGTTAATATTCCCGACAAGTAGCCCCGTATTGATTGAACGGTGGCCTCTCCCCACGAAAGCGTCTTTGTGCACTTGACATTGAGCGCGGTTTGACAGTCTTCGGTGGGCTGGAACTGCCCTACCCACACCCGTTTCCGGTCATCAAGTGCGACGATGATTTAATAGTCCCCCCTTTCCCCTTTTCTTTCTTTATCACCGCTCCAGCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG]




>consensus_8652#0
CCGCCCACGCGTCCGCCCACGCGTCCGGTGGTCCGGGGAGTCTCTCTCTCTCTCTCTCTC
TCTCCATCCCGATCGATACAATTGTTTGAACAATCTTACGCGCTTACCTTGCGCCGAGTG
CGTATGAGTCACGTGTCTCCGATTAGACCGTGGCGTTCAGCAATGCAGTCCAAAACCCGA
GAGATGTGTTGAATTTCCGCGCACGCACGCACAGTTATGTCGCCTTTTGTTTGAATAAAA
AAATGCATTACATCAAACGCTGCAGAACCTTCTAGTATGATTAGTGTGTGTAATAGTAGC
TTGTTAATATTCCCGACAAGTAGCCCCGTATTGATTGAACGGTGGCCTCTCCCCACGAAA
GCGTCTTTGTGCACTTGACATTGAGCGCGGTTTGACAGTCTTCGGTGGGCTGGAACTGCC
CTACCCACACCCGTTTCCGGTCATCAAGTGCGACGATGATTTAATAGTCCCCCCTTTCCC
CTTTTCTTTCTTTATCACCGCTCCAGCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCC
CGAGCTGAGCCGGTGCGTGATCGAGGCG

consensusID : consensus_8652#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 480
fasta sequence

                              [CCGCGGACGCGTGGGCCGGCGCGTTCGATTTCGCAGCCTGGCACGGTAAAGCAACACACAGCCACGCATTCTCTCGTTCTTCGTCCACCCAACAGGCAGAGG-AAAAGTGAGAGTGCGTTCCGTTCTTTGCGGCAGC-AAAAAAGAGGACACGGAGTTTGGAATCGAACACGCTGCTACAACGCCAGAGGCTTTCCAAGGATTCTACAGCGCGCAAGTTCACGGTCACGGCGGAGCCGAAAGTGAAGTGCACGTGTGCTGAGTGTACAGATTGAGGAAGTGAGGGTGGAAACAATAGTGCGAAAGAAAGTGAAACCGGAAAGTAAACCAGCCAGCCGCCCAAGCATGCTGCCAACGACGAACCTGGTGTGGATCGCCCTAACGGCGATCGTGTACCTCGGGGGAAGCTTCGCCGCACTCCCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG]

[+] EMBL BM653862             [CCGCGGACGCGTGGGCGGACGCGT  GGGTTCGCAGCCTGGCACGGTAAAGCAACACACAGCCACGCATTCTCTCGTTCTTCGTCCACCCAACAGGCAGAGG AAAAGTGAGAGTGCGTTCCGTTCTTTGCGGCAGC AAAAAAGAGGACACGGAGTTTGGAATCGAACACGCGGCTACAACGCCAGAGGCTTTCCAAGGATTCTACAGCGCGCAAGTTCACGGTCACGGCGGACCCGAAAGTGAAGTGCACGTGTGCTGAGTGTACAGATTGAGGAAGTGAGGGTGGAAACAATAGTGCGAAAGAAAGTGAAACCGGAAAGTAAACCAGCCAGCCGCCCAAGCATGCTGCCAACGACGAACCTGGTGTGGATCGCCCTAACGGCGATCGTGTACCTCGGGGGAAGCTTCGCCGCACTCCCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG]
[+] EMBL BM603457             [               CCGGTGCGTTCGATTTCGCAGCCTGGCACGGTAAAGCAACACACAGCCACGCATTCTCTCGTTCTTCGTCCACCCAACAGGCAGAGG AAAAGTGAGAGTGCGTTCCGTTCTTTGCGGCAGC AAAAAAGAGGACACGGAGTTTGGAATCGAACACGCGGCTACAACGCCAGAGGCTTTCCAAGGATTCTACAGCGCGCAAGTTCACGGTCACGGCGGACCCGAAAGTGAAGTGCACGTGTGCTGAGTGTACAGATTGAGGAAGTGAGGGTGGAAACAATAGTGCGAAAGAAAGTGAAACCGGAAAGTAAACCAGCCAGCCGCCCAAGCATGCTGCCAACGACGAACCTGGTGTGGATCGCCCTAACGGCGATCGTGTACCTCGGGGGAAGCTTCGCCGCACTCCCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG]
[+] EMBL BM629274             [               CCGGTGCGTTCGATTTCGCAGCCTGGCACGATAAAGCAACACACAGCCACGCATTCTCTCGTTCTTCGTCCACCCAACAGGCAGAGG AAAAGTGAGAGTGCGTTCCGTTCTTTGCGGCAGC AACAAAGAGGACACGGAGTTTGGAATCGAACACGCTGCTACAACGCCAGAGGCTTTCCAAGGATTCTACAGCGCGCAAGTTCACGGTCACGGCGGAGCCGAAAGTGAAGTGCACGTGTGCTGAGTGTACACATTGAGGAAGTGAGGGTGGAAACAATAGTGCGAAAGAAAGTGAAACCGGAAAGTAAACCAGCCAGCCGCCCAAGCATGCTGCCAACGACGAACCTGGTGTGGATCGCCCTAACGGCGATCGTGTACCTCGGGGGAAGCTTCGCCGCACTCCCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG]
[+] EMBL BM625285             [               CCGGTGCGTTCGATTTCGCAGCCTGGCACGATAAAGCAACACACAGCCACGCATTCTCTCGTTCTTCGTCCACCCAACAGGCAGAGG AAAAGTGAGAGTGCGTTCCGTTCTTTGCGGCAGC AACAAAGAGGACACGGAGTTTGGAATCGAACACGCTGCTACAACGCCAGAGGCTTTCCAAGGATTCTACAGCGCGCAAGTTCACGGTCACGGCGGAGCCGAAAGTGAAGTGCACGTGTGCTGAGTGTACAGATTGAGGAAGTGAGGGTGGAAACAATAGTGCGAAAGAAAGTGAAACCGGAAAGTAAACCAGCCAGCCGCCCAAGCATGCTGCCAACGACGAACCTGGTGTGGATCGCCCTAACGGCGATCGTGTACCTCGGGGGAAGCTTCGCCGCACTCCCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG]
[+] EMBL BM603362             [                  cCGCGTTCGATTTCGCAGCCTGGCACGATAAAGCAACACACAGCCACGCATTCTCTCGTTCTTCGTCCACCCAACAGGCAGAGGAAAAAGTGAGAGTGCGTTCCGTTCTTTGCGGCAGC AACAAAGAGGACACGGAGTTTGGAATCGAACACGCTGCTACAACGCCAGAGGCTTTCCAAGGATTCTACAGCGCGCAAGTTCACGGTCACGGCGGAGCCGAAAGTGAAGTGCACGTGTGCTGAGTGTACAGATTGAGGAAGTGAGGGTGGAAACAATAGTGCGAAAGAAAGTGAAACCGGAAAGTAAACCAGCCAGCCGCCCAAGCATGCTGCCAACGACGAACCTGGTGTGGATCGCCCTAACGGCGATCGTGTACCTCGGGGGAAGCTTCGCCGCACTCCCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG]
[+] EMBL BM624607             [                 ccgGCGTTCGATTTCGCAGCCTGGCACGGTAAAGCAACACACAGCCACGCATTCTCTCGTTCTTCGTCCATCCAACAGGCAGAGG AAAAGTGAGAGTGCGTTCCATTCTTTGCGGCAGCAAAAAAAGAGGACACGGAGTTTGGAATCGAACACGCTGCTACAACGCCAGAGGCCTTCCAAGGATTCTACAGCGCGCAAGTTCACGGTCACGGCGGAGCCGAAAGTGAAGTGCACGTGTGCTGAGTGTACAGATTGAGGAAGTGAGGGTGGAAACAACAGTGCGAAAGAAAGTGAAACCGGAAAGTAAACCAGCCAGCCGCCCAAGCATGCTGCCAACGACGAACCTGGTGTGGATCGCCCTAACGGCGATCGTGTACCTCGGGGGAAGCTTCGCCGCACTCCCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG]
[+] EMBL BM631953             [                   ccgGTTCGATTTCGCAGCCTGACACGGTAAAGCAACACACAGCCACGCATTCTCTCGTTCT   TCCAC       TCAGAGG AAAAGTGAGAGTGCGTTCCGTTCTTTGCGGCAGC AAAAAAGAGGACACGGAGTTTGGAATCGAACACGCTGCTACAACGCCAGAGGCTTTCCAAGGATTCTACAGCGCGCAAGTTCACGGTCAAGGCGAACCCGAAAGTGAAGTGCACGTGTGCTGAGTGTACAGATTGAGGAAGTGAGGGTGGAAACAACAGTGAGAAAGAAAGTGAAACCGGAAAGTAAACCAGCCAGCCGCCCAAGCATGCTGCCAACGACGAACCTGGTGTGGATCGCCCTAACGGCGATCGTGTACCTCGGGGGAAGCTTCGCCGCACTCCCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG]
[+] EMBL BM613963             [                       ccgGATTTCGCAGCCTGGCACGATAAAGCAACACACAGCCACGCATTCTCTCGTTCTTCGTCCACCCAACAGGCAGAGG AAAAGTGAGAGTGCGTTCCGTTCTTTGCGGCAGC AACAAAGAGGACACGGAGTTTGGAATCGAACACGCTGCTACAACGCCAGAGGCTTTCCAAGGATTCTACAGCGCGCAAGTTCACGGTCACGGCGGAGCCGAAAGTGAAGTGCACGTGTGCTGAGTGTACAGATTGAGGAAGTGAGGGTGGAAACAATAGTGCGAAAGAAAGTGAAACCGGAAAGTAAACCAGCCAGCCGCCCAAGCATGCTGCCAACGACGAACCTGGTGTGGATCGCCCTAACGGCGATCGTGTACCTCGGGGGAAGCTTCGCCGCACTCCCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG]
[+] EMBL BM610568             [                                               ccgGCAACACACAGCCACGCATTCTCTCGTTCTTCGTCCACCCAACAGGCAGAGG AAAAGTGAGAGTGCGTTCCGTTCTTTGCGGCAGC AAAAAAGAGGACACGGAGTTTGGAATCGAACACGCGGCTACAACGCCAGAGGCTTTCCAAGGATTCTACAGCGCGCAAGTTCACGGTCACGGCGGACCCGAAAGTGAAGTGCACGTGTGCTGAGTGTACAGATTGAGGAAGTGAGGGTGGAAACAATAGTGCGAAAGAAAGTGAAACCGGAAAGTAAACCAGCCAGCCGCCCAAGCATGCTGCCAACGACGAACCTGGTGTGGATCGCCCTAACGGCGATCGTGTACCTCGGGGGAAGCTTCGCCGCACTCCCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCG     ]




>consensus_8652#1
CCGCGGACGCGTGGGCCGGCGCGTTCGATTTCGCAGCCTGGCACGGTAAAGCAACACACA
GCCACGCATTCTCTCGTTCTTCGTCCACCCAACAGGCAGAGGAAAAGTGAGAGTGCGTTC
CGTTCTTTGCGGCAGCAAAAAAGAGGACACGGAGTTTGGAATCGAACACGCTGCTACAAC
GCCAGAGGCTTTCCAAGGATTCTACAGCGCGCAAGTTCACGGTCACGGCGGAGCCGAAAG
TGAAGTGCACGTGTGCTGAGTGTACAGATTGAGGAAGTGAGGGTGGAAACAATAGTGCGA
AAGAAAGTGAAACCGGAAAGTAAACCAGCCAGCCGCCCAAGCATGCTGCCAACGACGAAC
CTGGTGTGGATCGCCCTAACGGCGATCGTGTACCTCGGGGGAAGCTTCGCCGCACTCCCG
TCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG

consensusID : consensus_8652#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 353
fasta sequence

                              [AAAAAAATGCATTACATCAAACGCTGCAGAACCTTCTAGTATGATCAGTGTGTGTGAGTAGTAGCTTGTTAATATTCCCGACAAGTAGCCCCGTATTGATTGAACGGTGGCCTCTCCCCACGAAAGCGTCTTTGTGCACTTGACATTGAGCGCGGTTTGACAGTGCACAGTCTCTTCGGTGGGCTGGAACTGCCCTACCCACACCCGTTTCCGGTCATCAAGTGCGACGATGATTTAATAGCCCCCCCCCCCCCCCCCGTTTCCCCTTTTCTTTCTTTATCACCGCTCCAGCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG]

[+] EMBL BX620225             [AAAAAAATGCATTACATCAAACGCTGCAGAACCTTCTAGTATGATCAGTGTGTGTGAGTAGTAGCTTGTTAATATTCCCGACAAGTAGCCCCGTATTGATTGAACGGTGGCCTCTCCCCACGAAAGCGTCTTTGTGCACTTGACATTGAGCGCGGTTTGACAGTGCACAGTCTCTTCGGTGGGCTGGAACTGCCCTACCCACACCCGTTTCCGGTCATCAAGTGCGACGATGATTTAATAGCCCCCCCCCCCCCCCCCGTTTCCCCTTTTCTTTCTTTATCACCGCTCCAGCGTCCTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG]




>consensus_8652#2
AAAAAAATGCATTACATCAAACGCTGCAGAACCTTCTAGTATGATCAGTGTGTGTGAGTA
GTAGCTTGTTAATATTCCCGACAAGTAGCCCCGTATTGATTGAACGGTGGCCTCTCCCCA
CGAAAGCGTCTTTGTGCACTTGACATTGAGCGCGGTTTGACAGTGCACAGTCTCTTCGGT
GGGCTGGAACTGCCCTACCCACACCCGTTTCCGGTCATCAAGTGCGACGATGATTTAATA
GCCCCCCCCCCCCCCCCCGTTTCCCCTTTTCTTTCTTTATCACCGCTCCAGCGTCCTCCA
TCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8652#0      CCGCCCACGCGTCCGCCCACGCGTCCGGTGGTCCGGGGAGTCTCTCTCTCTCTCTCTCTC 60
consensus_8652#2      ------------------------------------------------------------
consensus_8652#1      ------------------------------------------------------------
                                                                                  

consensus_8652#0      TCTCCATCCCGATCGATACAATTGTTTGAACAATCTTACGCGCTTACCTTGCGCCGAGTG 120
consensus_8652#2      ------------------------------------------------------------
consensus_8652#1      ---------------------------------------CCGCGGACGCGTGGGCCGGCG 21
                                                                                  

consensus_8652#0      CGTATGAGTCACGTGTCTCCGATTAGACCGTGGCGTTCAGCAATGCAGTCCAAAACCCGA 180
consensus_8652#2      ------------------------------------------------------------
consensus_8652#1      CGTTCGATTTCGCAGCCTGGCACGGTAAAGCAACACACAGCCACGCATTCTCTCGTTCTT 81
                                                                                  

consensus_8652#0      GAGATGTGTTGAATTTCCGCGCACGCACGCACAGTTATGTCGCCTTTTGTTTGAATAAAA 240
consensus_8652#2      --------------------------------------------------------AAAA 4
consensus_8652#1      CGTCCAC-CCAACAGGCAGAGGAAAAGTGAGAGTGCGTTCCGTTCTTTGCGGCAGCAAAA 140
                                                                              ****

consensus_8652#0      AAATGCATTACATCAAACGCTGCAGAACCTTCTAGTATGATTAGTGTGTGTAA-TAGTAG 299
consensus_8652#2      AAATGCATTACATCAAACGCTGCAGAACCTTCTAGTATGATCAGTGTGTGTGAGTAGTAG 64
consensus_8652#1      AAGAGGAC-ACGGAGTTTGGAATCGAACACGCTGCTACAACGCCAGAGGCTTTCCAAGGA 199
                      **  * *  **       *     ****   **  **  *     * *  *    *    

consensus_8652#0      CTTGTTAATATTCCCGACAAGTAGCCCCGTATTGATTGAACGGTGGCCTCTCCCCACGA- 358
consensus_8652#2      CTTGTTAATATTCCCGACAAGTAGCCCCGTATTGATTGAACGGTGGCCTCTCCCCACGA- 123
consensus_8652#1      TTCTACAGCGCGCAAGTTCA-CGGTCACG-GCGGAGCCGAAAGTGAAGTGCACGTGTGCT 257
                       *    *     *  *   *   * * **    **    *  ***   *   *    *  

consensus_8652#0      AAGCGTCT---TTGTGCACTTGACATTGAGCGCGGTTTGACAGT---------CTTCGGT 406
consensus_8652#2      AAGCGTCT---TTGTGCACTTGACATTGAGCGCGGTTTGACAGTGCACAGTCTCTTCGGT 180
consensus_8652#1      GAGTGTACAGATTGAGGAAGTGAGGGTGGAAACAATAGTGCGAAAGAAAGTGAAACCGGA 317
                       ** **     *** * *  ***   **    *  *    *               *** 

consensus_8652#0      GGGCTGGAACTGCC--CTACCCACACCCGTTTCCGGTCATCAAGT--GCGACGAT-GATT 461
consensus_8652#2      GGGCTGGAACTGCC--CTACCCACACCCGTTTCCGGTCATCAAGT--GCGACGAT-GATT 235
consensus_8652#1      AAG-TAAACCAGCCAGCCGCCCAAGCATGCTGCCAACGACGAACCTGGTGTGGATCGCCC 376
                        * *  * * ***  *  ****  *  * * **    *  **    * *  *** *   

consensus_8652#0      TAATAGTCCCCCC-----------TTTCCCCTTTTCTTTCTTTATCACCGCTCCAGCGTC 510
consensus_8652#2      TAATAGCCCCCCCCCCCCCCCCCGTTTCCCCTTTTCTTTCTTTATCACCGCTCCAGCGTC 295
consensus_8652#1      TAACGGCGATCGT-----------GTACCTCGGGGGAAGCT---TCGCCGCACTCCCGTC 422
                      ***  *    *              * ** *        **   ** **** *   ****

consensus_8652#0      CTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG 568
consensus_8652#2      CTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG 353
consensus_8652#1      CTCCATCAAGGTGTGCTCGAGGAACGATCCCGAGCTGAGCCGGTGCGTGATCGAGGCG 480
                      **********************************************************