cluster # 87

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Anopheles gambiae
cluster # 87 cluster # 87 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_87#0 length = 623 sequences # 1

consensus_87#1 length = 605 sequences # 1

consensusID : consensus_87#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 623
fasta sequence

                              [CCGCCCACGCGTCCGCGGATCCGTGTTCCGGGCCCACACCAAGAAGCGAAAGGGAGAGCCGAAACTGCGCCATCTCGACTATGCCGAGCGTCACGGTTACCTGAAGGGTGTCGTGAAGCAAATCATCCACGATCCAGGCCGTGGTGCCCCGTTGGCGGTGGTGAACTTCCGCGACCCGTACCGCTTCCGCCTGAGCAAGCAGCTGTTCATCGCGGCCGAGGGCATGTACACCGGCCAGTTCGTGTACTGTGGACGTCGCGCCCAGCTGCAGATCGGTAACGTGCTGCCGATCGGTCTGATGCCGGAAGGTACGATTGTGTGCAATCTGGAGGAGAAGACCGGCGACCGTGGCAAGCTGGCCCGCACGTCGGGCAACTACGCCTCGGTCATTGCGCACAACCCGGACACCAAGCGTACGCGCGTGAAGCTGCCGTCCGGTGCGAAGAAGGTGCTGCCGTCGGCGAACCGTGCCATGATCGGTATCGTGGCCGGCGGTGGCCGTATCGACAAGCCCATCCTGAAGGCGGGCCGTGCGTACCACAAGTACAAGGTGAAGCGCAACTGCTGGCCGAAGGTGCGCGGTGTGGCGATGAACCCCGTCGAGCATCCGCACGGTGGTGGTA]

[+] EMBL BM605920             [CCGCCCACGCGTCCGCGGATCCGTGTTCCGGGCCCACACCAAGAAGCGAAAGGGAGAGCCGAAACTGCGCCATCTCGACTATGCCGAGCGTCACGGTTACCTGAAGGGTGTCGTGAAGCAAATCATCCACGATCCAGGCCGTGGTGCCCCGTTGGCGGTGGTGAACTTCCGCGACCCGTACCGCTTCCGCCTGAGCAAGCAGCTGTTCATCGCGGCCGAGGGCATGTACACCGGCCAGTTCGTGTACTGTGGACGTCGCGCCCAGCTGCAGATCGGTAACGTGCTGCCGATCGGTCTGATGCCGGAAGGTACGATTGTGTGCAATCTGGAGGAGAAGACCGGCGACCGTGGCAAGCTGGCCCGCACGTCGGGCAACTACGCCTCGGTCATTGCGCACAACCCGGACACCAAGCGTACGCGCGTGAAGCTGCCGTCCGGTGCGAAGAAGGTGCTGCCGTCGGCGAACCGTGCCATGATCGGTATCGTGGCCGGCGGTGGCCGTATCGACAAGCCCATCCTGAAGGCGGGCCGTGCGTACCACAAGTACAAGGTGAAGCGCAACTGCTGGCCGAAGGTGCGCGGTGTGGCGATGAACCCCGTCGAGCATCCGCACGGTGGTGGTA]




>consensus_87#0
CCGCCCACGCGTCCGCGGATCCGTGTTCCGGGCCCACACCAAGAAGCGAAAGGGAGAGCC
GAAACTGCGCCATCTCGACTATGCCGAGCGTCACGGTTACCTGAAGGGTGTCGTGAAGCA
AATCATCCACGATCCAGGCCGTGGTGCCCCGTTGGCGGTGGTGAACTTCCGCGACCCGTA
CCGCTTCCGCCTGAGCAAGCAGCTGTTCATCGCGGCCGAGGGCATGTACACCGGCCAGTT
CGTGTACTGTGGACGTCGCGCCCAGCTGCAGATCGGTAACGTGCTGCCGATCGGTCTGAT
GCCGGAAGGTACGATTGTGTGCAATCTGGAGGAGAAGACCGGCGACCGTGGCAAGCTGGC
CCGCACGTCGGGCAACTACGCCTCGGTCATTGCGCACAACCCGGACACCAAGCGTACGCG
CGTGAAGCTGCCGTCCGGTGCGAAGAAGGTGCTGCCGTCGGCGAACCGTGCCATGATCGG
TATCGTGGCCGGCGGTGGCCGTATCGACAAGCCCATCCTGAAGGCGGGCCGTGCGTACCA
CAAGTACAAGGTGAAGCGCAACTGCTGGCCGAAGGTGCGCGGTGTGGCGATGAACCCCGT
CGAGCATCCGCACGGTGGTGGTA

consensusID : consensus_87#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 605
fasta sequence

                              [GAATCGCCCGAGGTNTACCCATTGTTTTGAACTGATTTGTGTTGAGTTTCAAAATTGAGCAGAATACTATAATTTTTTTAATCCAACCAAATAAGCTCTCAAAAATAATGCGAACAATCAACCGAGAAAATATTTACACCACCGTATAGCTGAGAAAACGTGAAATTTTTTGTGGGGTTAGTTGAAAAAAACTTTATTTTTGTCACTGAAAAATTCAATTTAAAAAAAGTTACAACTTTTAGGGCAAAATAGCCATCTCTATTTGGGGCAAGTTTGCCACCATCTTTCATAGGCGCGAGCTGTCAAAAATGTAAACATTGTTGTAGCGTTCAGCGGTATGGTGCGCTTTTACGAGCGGATTCTACTCCGGAAAAACAGACCAGCAACAACCCATATTGCGATACAGTTTGTGATGAAAAGGGGTTCATTGGTGACTCAAGACATGTAGGAATACATACACTAGTGGTACAAACGTAATAATTTCCAATTATCAAAGAAATACGGTTATTTTAACCAGGTGGCCGTCTTGCCCCATACGAGTGGCACTCTTGCCCCATAGCCCAAAAAAAAAACAACGTCTTTTTGGACCTTTTTAAAACGCTTCA]

[+] EMBL AL934927             [GAATCGCCCGAGGTNTACCCATTGTTTTGAACTGATTTGTGTTGAGTTTCAAAATTGAGCAGAATACTATAATTTTTTTAATCCAACCAAATAAGCTCTCAAAAATAATGCGAACAATCAACCGAGAAAATATTTACACCACCGTATAGCTGAGAAAACGTGAAATTTTTTGTGGGGTTAGTTGAAAAAAACTTTATTTTTGTCACTGAAAAATTCAATTTAAAAAAAGTTACAACTTTTAGGGCAAAATAGCCATCTCTATTTGGGGCAAGTTTGCCACCATCTTTCATAGGCGCGAGCTGTCAAAAATGTAAACATTGTTGTAGCGTTCAGCGGTATGGTGCGCTTTTACGAGCGGATTCTACTCCGGAAAAACAGACCAGCAACAACCCATATTGCGATACAGTTTGTGATGAAAAGGGGTTCATTGGTGACTCAAGACATGTAGGAATACATACACTAGTGGTACAAACGTAATAATTTCCAATTATCAAAGAAATACGGTTATTTTAACCAGGTGGCCGTCTTGCCCCATACGAGTGGCACTCTTGCCCCATAGCCCAAAAAAAAAACAACGTCTTTTTGGACCTTTTTAAAACGCTTCA]




>consensus_87#1
GAATCGCCCGAGGTNTACCCATTGTTTTGAACTGATTTGTGTTGAGTTTCAAAATTGAGC
AGAATACTATAATTTTTTTAATCCAACCAAATAAGCTCTCAAAAATAATGCGAACAATCA
ACCGAGAAAATATTTACACCACCGTATAGCTGAGAAAACGTGAAATTTTTTGTGGGGTTA
GTTGAAAAAAACTTTATTTTTGTCACTGAAAAATTCAATTTAAAAAAAGTTACAACTTTT
AGGGCAAAATAGCCATCTCTATTTGGGGCAAGTTTGCCACCATCTTTCATAGGCGCGAGC
TGTCAAAAATGTAAACATTGTTGTAGCGTTCAGCGGTATGGTGCGCTTTTACGAGCGGAT
TCTACTCCGGAAAAACAGACCAGCAACAACCCATATTGCGATACAGTTTGTGATGAAAAG
GGGTTCATTGGTGACTCAAGACATGTAGGAATACATACACTAGTGGTACAAACGTAATAA
TTTCCAATTATCAAAGAAATACGGTTATTTTAACCAGGTGGCCGTCTTGCCCCATACGAG
TGGCACTCTTGCCCCATAGCCCAAAAAAAAAACAACGTCTTTTTGGACCTTTTTAAAACG
CTTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_87#0      ---CCGCCCACGCGTCCGCGGATCCGTGTTCCGGGCCCACACCAA--GAAGCGAAAGGGA 55
consensus_87#1      GAATCGCCCGAG-GTNTACCCAT---TGTTTTGAACTGATTTGTGTTGAGTTTCAAAATT 56
                        *****  * **   *  **   ****  *  *  *        **     **    

consensus_87#0      GAGCCGAAACTGCGCCATCTCGACTATGCCGAGCGTCACGGTTACCTGAAGGGTGTCGTG 115
consensus_87#1      GAGCAGAA--TACTATAATTTTTTTAATCCAACCAAATAAGCT--CTCAAAAATAATGCG 112
                    **** ***  * *   *  *    **  ** * *      * *  ** **   *   * *

consensus_87#0      AAGCAAATCATCCACGATCCAGGCCGTGGTGCCCCGTTGGCGGTGGTGAACTTCCGCGAC 175
consensus_87#1      AAC--AATCAACCGAGA---AAATATTTACACCACCGTA-TAGCTGAGAAAACGTGAAAT 166
                    **   ***** **  **   *     *    ** *  *    *  * ***     *  * 

consensus_87#0      CCGTACCGCTTCCGCCTGAGCAAGCAGCTGTTCATCGCGGCCGAGGGCATGTACACCGGC 235
consensus_87#1      TTTTTGTGGGGTTAGTTGAAAAAAACTTTATTT-TTGTCACTGAAAAATTCAATTTAAAA 225
                       *   *        ***  **     * **  * *   * **     *  *       

consensus_87#0      CAGTTCGTGTACTGT-GGACGTCGCGCCCAGCTGCAGATCGGTAACGT--GCTGCCGATC 292
consensus_87#1      AAAGTTACAACTTTTAGGGCAAAATAGCCATCTCTATTTGGGGCAAGTTTGCCACCATCT 285
                     *  *       * * ** *       *** **  *  * **  * **  **  **    

consensus_87#0      GGTCT-GATGCCGGAAGGTACGATTGTGTGCAATCTGGAGGAGAAGACCGGCG------A 345
consensus_87#1      TTCATAGGCGCGAGCTGTCAAAAATGTAAACATTGTTGTAGCGTTCAGCGGTATGGTGCG 345
                        * *  **  *  *  *  * ***   ** * * *  * *   * ***         

consensus_87#0      CCGTGGCAAGCTGGCCCGCACGTCGGGCAACTACGCCTCGGTCATTGCGCACAACCCGGA 405
consensus_87#1      CTTTTACGAGCGGATTC-TACTCCGGAAAA--ACAGACCAGCAACAACCCATATTGCG-A 401
                    *  *  * *** *   *  **  ***  **  **    * *  *   * ** *   ** *

consensus_87#0      CACCAAGCGTACGCGCGTGAAGCTGCCGTCCGGTG-CGAAGAAGGTGCTGCCGTCGGCGA 464
consensus_87#1      TAC--AGTTTGTG-ATGAAAAGGGGTTCATTGGTGACTCAAGACATGTAGGAATACATAC 458
                     **  **  *  *   *  ***  *      **** *  *  *  **  *   *      

consensus_87#0      ACC-GTGCCATGATCGGTATCGTGGCCGGCGGTGGCCGTATCGACAAGCCCATCCTGAAG 523
consensus_87#1      ACTAGTGGTACAAACG---TAATAATTTCCAATTATCAAAGAAATACGGTTATTTTAACC 515
                    **  ***  *  * **   *  *      *  *   *  *   * * *   **  * *  

consensus_87#0      GCG-GGCCGTGCGTACCACAAGTACAAGGTGAAGCGCAACTGC-TGGCC--GAAGGTGCG 579
consensus_87#1      AGGTGGCCGT-CTTGCCCCA--TACGAGTGGCACTCTTGCCCCATAGCCCAAAAAAAAAA 572
                      * ****** * * ** **  *** **  * *      *  * * ***   **      

consensus_87#0      CGGTGTGGCGATGAACCCCGTCGAGCATCCGCACGGTGGTGGTA 623
consensus_87#1      CAACGTCTTTTTGGACCTTTTTAAAACGCTTCA----------- 605
                    *   **     ** ***   *  *    *  **