Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 8803 cluster # 8803       Sequences # 12       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8803#0 length = 1251 sequences # 8  
consensus_8803#1 length = 675 sequences # 1  
consensus_8803#2 length = 581 sequences # 1  
consensus_8803#3 length = 499 sequences # 1  
consensus_8803#4 length = 319 sequences # 1  

consensusID : consensus_8803#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1251
fasta sequence
                              [GAATCCCCCGAGGTTATTTGGAATCCGATTTGTTGTTATATATACACTGGTTGCGAAAAGCGAACTTCTCTACTTCACCAAAATAGTTGCTTCAATGATAGTTACTGTGATTATTGCCTGTACTATTCGCTGTATATAGCTCGACAGATAGTTGAACTAGCCGTAAGGAGAAGCTGAATGAGTGGAAACGGGAACATGGGCTCGACGGAGGCAAATCCAACTCCCGGACGCTTCTCGCACTGCACCCTGTTGGCGAACGTCGATGCGTACAATCCCGATACGCTCGATCTTTATCAGGATCCGGAGGCGAATCGATACTGGTTCGCCTGCTTCAAAGACATGGTGCTCAAATTCGAGCGGCAGGCAATGGCAAGCCAATCGAAGGATGCCAGCGCTGCAGCCCGTGCCCAATCTTTCCGCGAGCACTGTGCCGAAATGCTCGTCCAGCTGCAGGAGGGCACACGAGAAACGCCATCATTGGGTATCAGAAACCTGCTGGAGGTAATCGAAAGTGCTCTCCGAAAGTTTGGCTTCGATGACCCTTGGAAGGAACAAAAGACGATCGAAAACAAAGCATCGATCGGTATGCTGAAGCCGC-GATTGCAGCAACTCGACAGCATAGCCTCCC-GGAGGGAAAAGTGGACGGAGATTGTACGTGGTGTACTAGCTGGTAATATGTTCGATTGGGGCGCCCAGGCTGTGACAAAAATTTTAGAAACAAACAATGGATTCGGCCTACAGCAGGCTCTAGATCGGATACAGAAAAGGCCCTGGTTAATCGACGACCTAGACGGGTGGCTCGACAGAATGGAGCACGATCCACCACACCGCTGTGCGACGATTTTCACTGACAATGCGGGCATCGACTTCGTGTTAGGGATTGTGCCCTTGGTT-CGCGAACTGTTGAAGCGCAACACGAAGGTGCTGCTGTGTGCGACCATCAATCCGGCGATAAACGATATTACGTACTCCGAGCTAACGAAAGCTATTGCCGATTGCTGCGAAGAGTGCGACATTCTACGAGACGCCTACAGCAAGGAACATCGGTTGCTGCTGTTTGGCAATGACCAAATCGGACCCTGTCTGGACTTTAGAGTGCTTTCAAAAGATTTATCGGACGCAATCGAACAAAATGACGTCGATTTATTGATAATTGTCGGAATGGCTCGGGCATTGCATACCAACCTGTACGCAAAGTTCGCGTGCGAAACATTCAAACTGGCTGTCGTAAAGAATGAATGGTTAGCTAAA]

[+] EMBL AL932946             [GAATCCCCCGAGGTTATTTGGAATCCGATTTGTTGTTATATATACACTGGTTGCGAAAAGCGAACTTCTCTACTTCACCAAAATAGTTGCTTCAATGATAGTTACTGTGATTATTGCCTGTACTATTCGCTGTATATAGCTCGACAGATAGTTGAACTAGCCGTAAGGAGAAGCTGAATGAGTGGAAACGGGAACATGGGCTCGACGGAGGCAAATCCAACTCCCGGACGCTTCTCGCACTGCACCCTGTTGGCGAACGTCGATGCGTACAATCCCGATACGCTCGATCTTTATCAGGATCCGGAGGCGAATCGATACTGGTTCGCCTGCTTCAAAGACATGGTGCTCAAATTCGAGCGGCAGGCAATGGCAAGCCAATCGAAGGATGCCAGCGCTGCAGCCCGTGCCCAATCTTTCCGCGAGCACTGTGCCGAAATGCTCGTCCAGCTGCAGGAGGGCACACGAGAAACGCCATCATTGGGTATCAGAAACCTGCTGGAGGTAATCGAAAGTGCTCTCCGAAAGTTTGGCTTCGATGACCCTTGGAAGGAACAAAAGACGATCGAAAACAAAGCATCGATCGGTATGCTGAAGCCGC GATTGCAGCAACTCGACAGCATAGCCTCCC GGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CNS09DO8             [          actggATTTGG CTCCGATTTGTTGTTATATATACACT GTTGCGAAAAGCGAACTTCTCTACTTCACCAAAATAGTTGCTTCAATGATAGTTACTGTGATTATTGCCTGTACTATTCGCTGTATATAGCTCGACAGATAGTTGAACTAGCCGTAAGGAGGAGCTGAATGAGTGGAAACGGGAACATGGGCTCGACGGAGGCAAATCCAACTCCCGGACGCTTCTCGCACTGCACCCTGTTGGCGAACGTCGATGCGTACAATCCCGATACGCTCGATCTTTATCAGGATCCGGAGGCGAATCGATACTGGTTCGCCTGCTTCAAAGACATGGTGCTCAAATTCGAGCGGCAGGCAATGGCAAGCCAATCGAAGGATGCCAGCGCTGCAGCCCGTGCCCAATCTTTCCGCGAGCACTGTGCCGAAATGCTCGTCCAGCTGCAGGAGGGCACACGAGAAACGCCATCATTGGGTATCAGAAACCTGCTGGAGGTAATCGAAAGTGgggggggaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BX606565             [                                                                                                GATAGTTACTGTGATTATTGCCTGTACTATTCGCTGTATATAGCTCGACAGATAGTTGAACTAGCCGTAAGGAGAAGCTGAATGAGTGGAAACGGGAACATGGGCTCGACGGAGGCAAATCCAACTCCCGGACGCTTCTCGCACTGCACCCTGTTGGCGAACGTCGATGCGTACAATCCCGATACGCTCGATCTTTATCAGGATCCGGAGGCGAATCGATACTGGTTCGCCTGCTTCAAAGACATGGTGCTCAAATTCGAGCGGCAGGCAATGGCAAGCCAATCGAAGGATGCCAGCGCTGCAGCCCGTGCCCAATCTTTCCGCGAGCACTGTGCCGAAATGCTCGTCCAGCTGCAGGAGGGCACACGAGAAACGCCATCATTGGGTATCAGAAACCTGCTGGAGGTAATCGAAAGTGCTCTCCGAAAGTTTGGCTTCGATGACCCTTGGAAGGAACAAAAGACGATCGAAAACAAAGCATCGATCGGTATGCTGAAGCCGC GATTGCAGCAACTCGACAGCATAGCCTCCC GGAGGGAAAAGTGGACGGAGATTGTACGTGGTGTACTAGCTGGTAATATGTTCGATTGGGGCGCCCAGGCTGTGACAAAAATTTTAGAAACAAACAATGGATTCGGCCTACAGCAGGCTCTAGATCGGATACAGAAAAGGCCCTGGTTAATCGACGACCTAGACGGGTGGCTCGACAGAATGGAGCACGATCCACCACACCGCTGTGCGACGATTTTCACTGACAATGCGGGCATCGACTTCGTGTTAGGGATTGTGCCCTTGGTT CGCGAACTGTTTGAGCGCAACA                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CNS09DO9             [                                                                                                                                                                                                                                                                                                      CAGCATCCGGAGGCGAATCGATACTGGTTCGCCTGCTTCAAAGACATGGTGCTCAAATTCGAGCGGCAGGCAATGGCAAGCCAATCGAAGGATGCCAGCGCTGCAGCCCGTGCCCAATCTTTCCGCGAGCACTGTGCCGAAATGCTCGTCCAGCTGCAGGAGGGCACACGAGAAACGCCATCATTGGGTATCAGAAACCTGCTGGAGGTAATCGAAAGTGCTCTCCGAAAGTTTGGCTTCGATGACCCTTGGAAGGAACAAAAGACGATCGAAAACAAAGCATCGATCGGTATGCTGAAGCCGC GATTGCAGCAACTCGACAGCATAGCCTCCC GGAGGGAAAAGTGGACGGAGATTGTACGTGGTGTACTAGCTGGTAATATGTTCGATTGGGGCGCCCAGGCTGTGACAAAAATTTTAGAAACAAACAATGGATTCGGCCGACAGCA GCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BX619299             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         nAAAGACGATCGAAAACAAAGC TC ATCGGTATGCTGAAGCCGCGGATTGCAGCAACTCGACAGCATAGCCTCCCGGGAGGGAAAAGTGGACGGAGATTGTACGTGGTGTACTAGCTGGTAATATGTTCGATTGGGGCGCCCAGGCTGTGACAAAAATTTTAGAAACAAACAATGGATTCGGCCTACAGCAGGCTCTAGATCGGATACAGAAAAGGCCCTGGTTAATCGACGACCTAGACGGGTGGCTCGACAGAATGGAGCACGATCCACCACACCGCTGTGCGACGATTTTCACTGACAATGCGGGCATCGACTTCGTGTTAGGGATTGTGCCCTTGGTTCCGCGAACTGTTGAAGCGCAACACGAAGGTGCTGCTGTGT                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BX607932             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TACGTGGTGTACTAGCTGGTAATATGTTCGATTGGGGCGCCCAGGCTGTGACAAAAATTTTAGAAACAAACAATGGATTCGGCCTACAGCAGGCTCTAGATCGGATACAGAAAAGGCCCTGGTTAATCGACTACCTAGACGGGTGGCTCGACAGAATGGAGCACGATCCACCACACCGCTGTGCGACGATTTTCACTGACAATGCGGGCATCGACTTCGTGTTAGGGATTGTGCCCTTGGTT CGCGAACTGTTGAAGCGCAACACGAAGGTGCTGCTGTGTGCGACCATCAATCCGGCGATAAACGATATTACGTACTCCGAGCTAACGAAAGCTATTGCCGATTGCTGCGAAGAGTGCGACATTCTACGAGACGCCTACAGCAAGGAACATCGGTTGCTGCTGTTTGGCAATGACCAAATCGGACCCTGTCTGGACTTTAGAGTGCTTTCAAAAGATTTATCGGACGCAATCGAACAAAATGACGTCGATTTATTGATAATTGTCGGAATGGCTCGGGCATTGCATACCAACCTGTACGCAAAGTTCGCGTGCGAAACATTCAAACTGGCTGTCGTAAAGAATGAATGGTTAGCTAAA]
[+] EMBL BX611814             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GTGGCTCGACAGAATGGAGCACGATCCACCACACCGCTGTGCGACGATTTTCACTGACAATGCGGGCATCGACTTCCTGTTAGGGATTGTGCCCTTGGTT CGCG                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BX612546             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GCGACATTCTACGAGACGCCTACAGCAAGGAACATCGGTGGCTGCTGTTTGGCAATGACCAAATCGGACCCGGTCTGGACTTTAGAGGGCTTTCAAAAGAATTATCG                                                                                                                                       ]


>consensus_8803#0 GAATCCCCCGAGGTTATTTGGAATCCGATTTGTTGTTATATATACACTGGTTGCGAAAAG CGAACTTCTCTACTTCACCAAAATAGTTGCTTCAATGATAGTTACTGTGATTATTGCCTG TACTATTCGCTGTATATAGCTCGACAGATAGTTGAACTAGCCGTAAGGAGAAGCTGAATG AGTGGAAACGGGAACATGGGCTCGACGGAGGCAAATCCAACTCCCGGACGCTTCTCGCAC TGCACCCTGTTGGCGAACGTCGATGCGTACAATCCCGATACGCTCGATCTTTATCAGGAT CCGGAGGCGAATCGATACTGGTTCGCCTGCTTCAAAGACATGGTGCTCAAATTCGAGCGG CAGGCAATGGCAAGCCAATCGAAGGATGCCAGCGCTGCAGCCCGTGCCCAATCTTTCCGC GAGCACTGTGCCGAAATGCTCGTCCAGCTGCAGGAGGGCACACGAGAAACGCCATCATTG GGTATCAGAAACCTGCTGGAGGTAATCGAAAGTGCTCTCCGAAAGTTTGGCTTCGATGAC CCTTGGAAGGAACAAAAGACGATCGAAAACAAAGCATCGATCGGTATGCTGAAGCCGCGA TTGCAGCAACTCGACAGCATAGCCTCCCGGAGGGAAAAGTGGACGGAGATTGTACGTGGT GTACTAGCTGGTAATATGTTCGATTGGGGCGCCCAGGCTGTGACAAAAATTTTAGAAACA AACAATGGATTCGGCCTACAGCAGGCTCTAGATCGGATACAGAAAAGGCCCTGGTTAATC GACGACCTAGACGGGTGGCTCGACAGAATGGAGCACGATCCACCACACCGCTGTGCGACG ATTTTCACTGACAATGCGGGCATCGACTTCGTGTTAGGGATTGTGCCCTTGGTTCGCGAA CTGTTGAAGCGCAACACGAAGGTGCTGCTGTGTGCGACCATCAATCCGGCGATAAACGAT ATTACGTACTCCGAGCTAACGAAAGCTATTGCCGATTGCTGCGAAGAGTGCGACATTCTA CGAGACGCCTACAGCAAGGAACATCGGTTGCTGCTGTTTGGCAATGACCAAATCGGACCC TGTCTGGACTTTAGAGTGCTTTCAAAAGATTTATCGGACGCAATCGAACAAAATGACGTC GATTTATTGATAATTGTCGGAATGGCTCGGGCATTGCATACCAACCTGTACGCAAAGTTC GCGTGCGAAACATTCAAACTGGCTGTCGTAAAGAATGAATGGTTAGCTAAA



consensusID : consensus_8803#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 675
fasta sequence
                              [AGATCCGCAGGTTAAAAGCATCATTGGGTATCAGAAACTGCTGGATGTAATCGAAAGTGCTCTCCGAAAGTTTGGCTTCGATGACCCTTGGAAGGAACAAAAGACGATCGAAAACAAAGCATCGATCGGTATGCTAAAGCCGCGATTGCAGCAACTCGACAGCATACCTCCCGGAGGGAAAAGTGGACGGAGATTGTACGTGGTGTACTACTGGTAATATGTTCGATTGGGGGCGCCCAGCTGTGACAAAAATTTTAAAAACAATGGATTCGGCTACAGCAGGGCTCTAGATCCGGATACAGAAAAGGGCCTGGTTAATCGACGACCTAAGAACAGGGTTGGCTCGACAGAATGGAGCAACGATCCACCACACCGTGGTGCGGACGGATTTTCACTGGACAAATGCGGGGNCATTCGAACTTTCGCTGTTAGGGGATTTGTGCCCTTTGTGTTTCGGCGAACTGTTTGACTGCGCAAACACGACAAGGGTGCTGCGTGTGTGCGAACCATCAANTCACGGGGATAAAAACGAATATTAACGGTAACTACCGAGCTTAACCGAAAACGCTAATTGCCGACTTTGCTGGGCAAGAGGTGCGACATTTCTANGAAGACAGCGCTACCAGACANGGAAAGATCGGTTGCTNGCGNTGNNTGGGCAATGACCAAATCGGA]

[+] EMBL AL695630             [AGATCCGCAGGTTAAAAGCATCATTGGGTATCAGAAACTGCTGGATGTAATCGAAAGTGCTCTCCGAAAGTTTGGCTTCGATGACCCTTGGAAGGAACAAAAGACGATCGAAAACAAAGCATCGATCGGTATGCTAAAGCCGCGATTGCAGCAACTCGACAGCATACCTCCCGGAGGGAAAAGTGGACGGAGATTGTACGTGGTGTACTACTGGTAATATGTTCGATTGGGGGCGCCCAGCTGTGACAAAAATTTTAAAAACAATGGATTCGGCTACAGCAGGGCTCTAGATCCGGATACAGAAAAGGGCCTGGTTAATCGACGACCTAAGAACAGGGTTGGCTCGACAGAATGGAGCAACGATCCACCACACCGTGGTGCGGACGGATTTTCACTGGACAAATGCGGGGNCATTCGAACTTTCGCTGTTAGGGGATTTGTGCCCTTTGTGTTTCGGCGAACTGTTTGACTGCGCAAACACGACAAGGGTGCTGCGTGTGTGCGAACCATCAANTCACGGGGATAAAAACGAATATTAACGGTAACTACCGAGCTTAACCGAAAACGCTAATTGCCGACTTTGCTGGGCAAGAGGTGCGACATTTCTANGAAGACAGCGCTACCAGACANGGAAAGATCGGTTGCTNGCGNTGNNTGGGCAATGACCAAATCGGA]


>consensus_8803#1 AGATCCGCAGGTTAAAAGCATCATTGGGTATCAGAAACTGCTGGATGTAATCGAAAGTGC TCTCCGAAAGTTTGGCTTCGATGACCCTTGGAAGGAACAAAAGACGATCGAAAACAAAGC ATCGATCGGTATGCTAAAGCCGCGATTGCAGCAACTCGACAGCATACCTCCCGGAGGGAA AAGTGGACGGAGATTGTACGTGGTGTACTACTGGTAATATGTTCGATTGGGGGCGCCCAG CTGTGACAAAAATTTTAAAAACAATGGATTCGGCTACAGCAGGGCTCTAGATCCGGATAC AGAAAAGGGCCTGGTTAATCGACGACCTAAGAACAGGGTTGGCTCGACAGAATGGAGCAA CGATCCACCACACCGTGGTGCGGACGGATTTTCACTGGACAAATGCGGGGNCATTCGAAC TTTCGCTGTTAGGGGATTTGTGCCCTTTGTGTTTCGGCGAACTGTTTGACTGCGCAAACA CGACAAGGGTGCTGCGTGTGTGCGAACCATCAANTCACGGGGATAAAAACGAATATTAAC GGTAACTACCGAGCTTAACCGAAAACGCTAATTGCCGACTTTGCTGGGCAAGAGGTGCGA CATTTCTANGAAGACAGCGCTACCAGACANGGAAAGATCGGTTGCTNGCGNTGNNTGGGC AATGACCAAATCGGA



consensusID : consensus_8803#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 581
fasta sequence
                              [CCAGAATCCCGNCACGAGTGTGACGAAAAGCGAACTTCTCTACTTCACCAAAATAGTTGCTTCAATGATAGTTACTGTGATTATTGCCTGTACTATTCGCTGTATATAGCTCGACAGATAGTTGAACTAGCCGTAAGGAGAAGCTGAATGAGTGGAAACGGGAACATGGGCTCGACGGAGGCAAATCCAACTCCCGGACGCTTCTCGCACTGCACCCTGTTGGCGAACGTCGATGCGTACAATCCCGATACGCTCGATCTTTATCAGGATCCGGAGGCGAATCGATACTGGTTCGCCTGCTTCAAAGACATGGTGCTCAAATTCGAGCGGCAGGCAATGGCAAGCCAATCGAAGGATGCCAGCGCTGCAGCCCGTGCCCAATCTTTCCGGGAGCACTGTGCGGAAATGCTCGTCCAGCTGCAGGAGGGCACACGAGAAACGCCATCATTGGGTATCAGAAACCTGCTGGAGGTAATCGAAAGTGCTCTCCGAAAGTTTGGCTTCGATGACCCTTGGAAGGAACAAAAGACGATCGAAAACAAAGCATCGATCGGTATGCTAAAGCCGCGATTGCAGCAACT]

[+] EMBL BX466192             [CCAGAATCCCGNCACGAGTGTGACGAAAAGCGAACTTCTCTACTTCACCAAAATAGTTGCTTCAATGATAGTTACTGTGATTATTGCCTGTACTATTCGCTGTATATAGCTCGACAGATAGTTGAACTAGCCGTAAGGAGAAGCTGAATGAGTGGAAACGGGAACATGGGCTCGACGGAGGCAAATCCAACTCCCGGACGCTTCTCGCACTGCACCCTGTTGGCGAACGTCGATGCGTACAATCCCGATACGCTCGATCTTTATCAGGATCCGGAGGCGAATCGATACTGGTTCGCCTGCTTCAAAGACATGGTGCTCAAATTCGAGCGGCAGGCAATGGCAAGCCAATCGAAGGATGCCAGCGCTGCAGCCCGTGCCCAATCTTTCCGGGAGCACTGTGCGGAAATGCTCGTCCAGCTGCAGGAGGGCACACGAGAAACGCCATCATTGGGTATCAGAAACCTGCTGGAGGTAATCGAAAGTGCTCTCCGAAAGTTTGGCTTCGATGACCCTTGGAAGGAACAAAAGACGATCGAAAACAAAGCATCGATCGGTATGCTAAAGCCGCGATTGCAGCAACT]


>consensus_8803#2 CCAGAATCCCGNCACGAGTGTGACGAAAAGCGAACTTCTCTACTTCACCAAAATAGTTGC TTCAATGATAGTTACTGTGATTATTGCCTGTACTATTCGCTGTATATAGCTCGACAGATA GTTGAACTAGCCGTAAGGAGAAGCTGAATGAGTGGAAACGGGAACATGGGCTCGACGGAG GCAAATCCAACTCCCGGACGCTTCTCGCACTGCACCCTGTTGGCGAACGTCGATGCGTAC AATCCCGATACGCTCGATCTTTATCAGGATCCGGAGGCGAATCGATACTGGTTCGCCTGC TTCAAAGACATGGTGCTCAAATTCGAGCGGCAGGCAATGGCAAGCCAATCGAAGGATGCC AGCGCTGCAGCCCGTGCCCAATCTTTCCGGGAGCACTGTGCGGAAATGCTCGTCCAGCTG CAGGAGGGCACACGAGAAACGCCATCATTGGGTATCAGAAACCTGCTGGAGGTAATCGAA AGTGCTCTCCGAAAGTTTGGCTTCGATGACCCTTGGAAGGAACAAAAGACGATCGAAAAC AAAGCATCGATCGGTATGCTAAAGCCGCGATTGCAGCAACT



consensusID : consensus_8803#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 499
fasta sequence
                              [CCGAGCTTTCAAGGCGGGTAACAAATGAGTTTACAGATATGTACGTCAGTGTCGAGCGTGTACGACGTACAGGAGCGATGTATTCACGCAAATAGTTCTAGCGGAGTTTTTTTTCGATTGCAAAGCAAAAAGAATTCAGTAATAACACAGGGAGAGCATTGTATTTGGTTCATTTTGTTGGTGGCTGGCAACACTTCCCCTTTGACGTCTCGGCAGAGAGTTTAAATAGCCGTAAGGAGAAGCTGAATGAGTGGAAACGGGAACATGGACTCGACAGAGGCAAATCCAACTCCCGGACGCTTCTCGCACTGCACCCTGTTGGCGAACGTCGATGCGTACAATCCCGATACGCTCGATCTTTATCAGGATCCGGAGGCGAATCGATACTGGTTCGCCTGCTTCAAAGACATGGTGCTCAAGTTCGAGCGGCAGGCAATGGCAAGTCAATCGAAGGATGCCAGCGCTGCAGCCCGTGCCCAATCTTTCCGCGAGCACTGTG]

[+] EMBL BM604025             [CCGAGCTTTCAAGGCGGGTAACAAATGAGTTTACAGATATGTACGTCAGTGTCGAGCGTGTACGACGTACAGGAGCGATGTATTCACGCAAATAGTTCTAGCGGAGTTTTTTTTCGATTGCAAAGCAAAAAGAATTCAGTAATAACACAGGGAGAGCATTGTATTTGGTTCATTTTGTTGGTGGCTGGCAACACTTCCCCTTTGACGTCTCGGCAGAGAGTTTAAATAGCCGTAAGGAGAAGCTGAATGAGTGGAAACGGGAACATGGACTCGACAGAGGCAAATCCAACTCCCGGACGCTTCTCGCACTGCACCCTGTTGGCGAACGTCGATGCGTACAATCCCGATACGCTCGATCTTTATCAGGATCCGGAGGCGAATCGATACTGGTTCGCCTGCTTCAAAGACATGGTGCTCAAGTTCGAGCGGCAGGCAATGGCAAGTCAATCGAAGGATGCCAGCGCTGCAGCCCGTGCCCAATCTTTCCGCGAGCACTGTG]


>consensus_8803#3 CCGAGCTTTCAAGGCGGGTAACAAATGAGTTTACAGATATGTACGTCAGTGTCGAGCGTG TACGACGTACAGGAGCGATGTATTCACGCAAATAGTTCTAGCGGAGTTTTTTTTCGATTG CAAAGCAAAAAGAATTCAGTAATAACACAGGGAGAGCATTGTATTTGGTTCATTTTGTTG GTGGCTGGCAACACTTCCCCTTTGACGTCTCGGCAGAGAGTTTAAATAGCCGTAAGGAGA AGCTGAATGAGTGGAAACGGGAACATGGACTCGACAGAGGCAAATCCAACTCCCGGACGC TTCTCGCACTGCACCCTGTTGGCGAACGTCGATGCGTACAATCCCGATACGCTCGATCTT TATCAGGATCCGGAGGCGAATCGATACTGGTTCGCCTGCTTCAAAGACATGGTGCTCAAG TTCGAGCGGCAGGCAATGGCAAGTCAATCGAAGGATGCCAGCGCTGCAGCCCGTGCCCAA TCTTTCCGCGAGCACTGTG



consensusID : consensus_8803#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 319
fasta sequence
                              [CAGATTCGCCCAGAGGTGTCGCTGCTTCAAGACATGTGCTCAAATCCGAGCGGCAGGCATGGCAAGCCAATCGAAGGATGCAGCGCTGCAGCCCGTGCCCAATCTTTCCGCGAGCACTGTGCCGAAATGCTCGTCCAGCTGCAGGAGGGCACACGAGAAACGCCATCATTGGGTATCAGAAACCTGCCTGGGAGGTAATCGAAAGTGCTCTCCGAAAGTTTGGTTCGATGACCTTGGAGGAACAAAAGACGATCGAAAACAAAGCATCGATCGGATGCTGAAAGCCGGATTGCGAATCGACAGATACTCCCGGAGGGAA]

[+] EMBL AL696862             [CAGATTCGCCCAGAGGTGTCGCTGCTTCAAGACATGTGCTCAAATCCGAGCGGCAGGCATGGCAAGCCAATCGAAGGATGCAGCGCTGCAGCCCGTGCCCAATCTTTCCGCGAGCACTGTGCCGAAATGCTCGTCCAGCTGCAGGAGGGCACACGAGAAACGCCATCATTGGGTATCAGAAACCTGCCTGGGAGGTAATCGAAAGTGCTCTCCGAAAGTTTGGTTCGATGACCTTGGAGGAACAAAAGACGATCGAAAACAAAGCATCGATCGGATGCTGAAAGCCGGATTGCGAATCGACAGATACTCCCGGAGGGAA]


>consensus_8803#4 CAGATTCGCCCAGAGGTGTCGCTGCTTCAAGACATGTGCTCAAATCCGAGCGGCAGGCAT GGCAAGCCAATCGAAGGATGCAGCGCTGCAGCCCGTGCCCAATCTTTCCGCGAGCACTGT GCCGAAATGCTCGTCCAGCTGCAGGAGGGCACACGAGAAACGCCATCATTGGGTATCAGA AACCTGCCTGGGAGGTAATCGAAAGTGCTCTCCGAAAGTTTGGTTCGATGACCTTGGAGG AACAAAAGACGATCGAAAACAAAGCATCGATCGGATGCTGAAAGCCGGATTGCGAATCGA CAGATACTCCCGGAGGGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8803#0      GAATCCCCCGAGGTTATTTGGAATCCGATTTGTTGTTATATATACACTGGTTGCGAAAAG 60
consensus_8803#1      ------------------------------------------------------------
consensus_8803#4      ------------------------------------------------------------
consensus_8803#2      ------------------------------------------------------------
consensus_8803#3      ------------------------------------------------------------
                                                                                  

consensus_8803#0      CGAACTTCTCTACTTCACCAAAATAGTTGCTTCAATGATAGTTACTGTGATTATTGCCTG 120
consensus_8803#1      ------------------------------------------------------------
consensus_8803#4      ------------------------------------------------------------
consensus_8803#2      ------------------------------------------------------------
consensus_8803#3      ------------------------------------------------------------
                                                                                  

consensus_8803#0      TACTATTCGCTGTATATAGCTCGACAGATAGTTGAACTAGCCGTAAGGAGAAGCTGAATG 180
consensus_8803#1      ------------------------------------------------------------
consensus_8803#4      ------------------------------------------------------------
consensus_8803#2      ------------------------------------------------------------
consensus_8803#3      ------------------------------------------------------------
                                                                                  

consensus_8803#0      AGTGGAAACGGGAACATGGGCTCGACGGAGGCAAATCCAACTCCCGGACGCTTCTCGCAC 240
consensus_8803#1      ------------------------------------------------------------
consensus_8803#4      ------------------------------------------------------------
consensus_8803#2      ------------------------------------------------------------
consensus_8803#3      ------------------------------------------------------------
                                                                                  

consensus_8803#0      TGCACCCTGTTGGCGAACGTCGATGCGTACAATCCCGATACGCTCGATCTTTATCAGGAT 300
consensus_8803#1      ------------------------------------------------------------
consensus_8803#4      ------------------------------------------------------------
consensus_8803#2      ------------------------------------------------------------
consensus_8803#3      ------------------------------------------------------------
                                                                                  

consensus_8803#0      CCGGAGGCGAATCGATACTGGTTCGCCTGCTTCAAAGACATGGTGCTCAAATTCGAGCGG 360
consensus_8803#1      ------------------------------------------------------------
consensus_8803#4      ------------------------------------------------------------
consensus_8803#2      ------------------------------------------------------------
consensus_8803#3      ------------------------------------------------------------
                                                                                  

consensus_8803#0      CAGGCAATGGCAAGCCAATCGAAGGATGCCAGCGCTGCAGCCCGTGCCCAATCTTTCCGC 420
consensus_8803#1      ------------------------------------------------------------
consensus_8803#4      ------------------------------------------------------------
consensus_8803#2      ------------------------------------------------------------
consensus_8803#3      ------------------------------------------------------------
                                                                                  

consensus_8803#0      GAGCACTGTGCCGAAATGCTCGTCCAGCTGCAGGAGGGCACACGAGAAACGCCATCATTG 480
consensus_8803#1      ---------------------------------AGATCCGCAGGTTAAAAGC-ATCATTG 26
consensus_8803#4      ------------------------------------------------------------
consensus_8803#2      ------------------------------------------------------------
consensus_8803#3      ------------------------------------------------------------
                                                                                  

consensus_8803#0      GGTATCAGAAACCTGCTGGAGGTAATCGAAAGTGCTCTCCGAAAGTTTGGCTTCGATGAC 540
consensus_8803#1      GGTATCAGAAAC-TGCTGGATGTAATCGAAAGTGCTCTCCGAAAGTTTGGCTTCGATGAC 85
consensus_8803#4      ------------------------------------------------------------
consensus_8803#2      ------------------------------------------------------------
consensus_8803#3      ------------------------------------------------------------
                                                                                  

consensus_8803#0      CCTTGGAAGGAACAAAAGACGATCGAAAACAAAGCATCGATCGGTATGCTGAAGCCGCGA 600
consensus_8803#1      CCTTGGAAGGAACAAAAGACGATCGAAAACAAAGCATCGATCGGTATGCTAAAGCCGCGA 145
consensus_8803#4      ------------------------------------------------------------
consensus_8803#2      ------------------------------------------------------------
consensus_8803#3      -----------------------------------------CCGAGCTTTCAAGGCGGGT 19
                                                                                  

consensus_8803#0      TTGCAGCAACTCGACAGCATAGCCTCCCGGAGGGAAAAGTGGACGGAGATTGTACGTGGT 660
consensus_8803#1      TTGCAGCAACTCGACAGCATA-CCTCCCGGAGGGAAAAGTGGACGGAGATTGTACGTGGT 204
consensus_8803#4      ------------------------------------------------------------
consensus_8803#2      ------------------------------------------------------------
consensus_8803#3      AACAAATGAGTTTACAGATATGTACGTCAGTGTCGAGCGTGTACGACGTACAGGAGCGAT 79
                                                                                  

consensus_8803#0      GTACTAGCTGGTAATATGTTCGATTGGGGCGCCCAGGCTGTGACAAAAATTTTAGAAACA 720
consensus_8803#1      GTACTA-CTGGTAATATGTTCGATTGGGGGCGCCCAGCTGTGACAAAAATTTTAAAAA-- 261
consensus_8803#4      ------------------------------------------------------------
consensus_8803#2      -----------------------CCAGAATCCCGNCACGAGTGTGACG----AAAAGC-- 31
consensus_8803#3      GTATT--CACGCAAATAGTTCTAGCGGAGTTTTTTTTCGATTGCAAAG----CAAAAA-- 131
                                                                                  

consensus_8803#0      AACAATGGATTCGGCCTACAGCAGG-CTCTAGATC-GGATACAGAAAAGGCCCTGGTTAA 778
consensus_8803#1      --CAATGGATTCGGC-TACAGCAGGGCTCTAGATCCGGATACAGAAAAGGGCCTGGTTAA 318
consensus_8803#4      ------------------------------------------------------------
consensus_8803#2      ------GAACTTCTC-TACTTCACCAAAATAGTTGCTTCAATGATAG-TTACTGTGATTA 83
consensus_8803#3      ------GAATTCAGT-AATAACACAGGGAGAGCATTGTATTTGGT---TCATTTTGTTGG 181
                                                                                  

consensus_8803#0      TCGACGACCTAG----ACGGGTGGCTCGACAGAATGGAGCA-CGATCCACCACACCGCTG 833
consensus_8803#1      TCGACGACCTAAGAACAGGGTTGGCTCGACAGAATGGAGCAACGATCCACCACACCGTGG 378
consensus_8803#4      --------------------CAGATTCGCCCAGAGGTGTCGCTGCTTCAAGACAT----G 36
consensus_8803#2      TTGCCTGTACTATTCGCTGTAT-ATAGCTCGACAGATAGTT-GAACTAGCCGTAAGGAGA 141
consensus_8803#3      TGGCTGGCAACACTTCCCCTTTGACGTCTCGGCAGAGAGTT-TAAATAGCCGTAAGGAGA 240
                                                   *   *                   *      

consensus_8803#0      TGCGAC--GATTTTCACTGAC--AATGCGGGCA---TCGA---CTTCG-TGTTAGGGA-- 880
consensus_8803#1      TGCGGACGGATTTTCACTGGACAAATGCGGGGNCATTCGAAC-TTTCGCTGTTAGGGGAT 437
consensus_8803#4      TGCTCA--AATCCGAGCGGCAGGCATGGCAAGCCAATCGAAGGATGCAGCGCTGCAGC-- 92
consensus_8803#2      AGCTGAATGAGTGGAAACGGG--AACATGGGCTCGACGGAGGCAAATCCAACTCCCGG-- 197
consensus_8803#3      AGCTGAATGAGTGGAAACGGG--AACATGGACTCGACAGAGGCAAATCCAACTCCCGG-- 296
                       **      *        *     *             **            *   *   

consensus_8803#0      TTGTGCCCTTGGTTC----GCGAACTGTTGAAGCGC---AACACG-A---AGGTGCTGC- 928
consensus_8803#1      TTGTGCCCTTTGTGTTTCGGCGAACTGTTTGACTGCGCAAACACG-ACAAGGGTGCTGCG 496
consensus_8803#4      CCGTGCCCAATCTTTCCGCGAGCACTGTGCCGAAATGCTCGTCCA-GCTGCAGGAGGGC- 150
consensus_8803#2      --ACGCTTCTCGCACT---GCACCCTGTTGGCGAACGTCGATGCGTACAATCCCGATAC- 251
consensus_8803#3      --ACGCTTCTCGCACT---GCACCCTGTTGGCGAACGTCGATGCGTACAATCCCGATAC- 350
                          **             *    ****               *              * 

consensus_8803#0      TGTGTGCGA-CCATCAATCC--GGCGATAAACG---ATATTAC--GTACT--CCGAGCTA 978
consensus_8803#1      TGTGTGCGAACCATCAANTCACGGGGATAAAAACGAATATTAACGGTAACTACCGAGCTT 556
consensus_8803#4      -ACACGAGAAACGCCATCATTGGGTATCAGAAACCTGCCTGGGAGGTAATCGAAAGTGCT 209
consensus_8803#2      -GCTCGATCTTTATCAGGATCCGGAGGCGAA--------TCGATACTGGTTCGCCTGCTT 302
consensus_8803#3      -GCTCGATCTTTATCAGGATCCGGAGGCGAA--------TCGATACTGGTTCGCCTGCTT 401
                           *        **      **      *        *      *             

consensus_8803#0      A--CGAAAGCT---ATTGCCGA--TTGCTG---CGAAGAGTGCGACATT-CTACGAGA-- 1025
consensus_8803#1      AACCGAAAACGCTAATTGCCGACTTTGCTGGG-CAAGAGGTGCGACATTTCTANGAAGAC 615
consensus_8803#4      CTCCGAAAGTTTGGTTCGATGACCTTGGAGGAACAAAAGACG----ATCGAAAACAAAGC 265
consensus_8803#2      ---CAAAGACAT--GGTGCTCAAATTCGAGCGGCAGGCAATGGCAAGCCAATCGAAGGA- 356
consensus_8803#3      ---CAAAGACAT--GGTGCTCAAGTTCGAGCGGCAGGCAATGGCAAGTCAATCGAAGGA- 455
                         * **          *   *  **   *   *       *             *    

consensus_8803#0      --CGCCTACAG-CAAGGAAC-ATCGGTTGCTG---CTGTTTGG-CAATGACCAAATCGGA 1077
consensus_8803#1      AGCGCTACCAGACANGGAAAGATCGGTTGCTNGCGNTGNNTGGGCAATGACCAAATCGGA 675
consensus_8803#4      ATCG--ATCGGATGCTGAAAGCCGGATTGCGA---ATCGACAGATACTC-CCGGAGGGAA 319
consensus_8803#2      -----TGCCAG-CGCTGCAG-CCCGTGCCCAATCTTTCCGGGAGCACTGTGCGGAAATGC 409
consensus_8803#3      -----TGCCAG-CGCTGCAG-CCCGTGCCCAATCTTTCCGCGAGCACTGTG--------- 499
                              * *     * *     *    *      *        * *            

consensus_8803#0      CCCTGTCTGGACTTTAGAGTGCTTTCAAAAGATTTATCGGACGCAATCGAACAAAATGAC 1137
consensus_8803#1      ------------------------------------------------------------
consensus_8803#4      ------------------------------------------------------------
consensus_8803#2      TCGTCCAGCTGCAGGAGGGCACACGAGAAACGCCATCATTGGGTATCAGAAACCTGCTGG 469
consensus_8803#3      ------------------------------------------------------------
                                                                                  

consensus_8803#0      GTCGATTTATTGATAATTGTCGGAATGGCTCGGGCATTGCATACCAACCTGTACGCAAAG 1197
consensus_8803#1      ------------------------------------------------------------
consensus_8803#4      ------------------------------------------------------------
consensus_8803#2      AGGTAATCGAAAGTGCTCTCCGAAAGTTTGGCTTCGATGACCCTTGGAAGGAACAAAAGA 529
consensus_8803#3      ------------------------------------------------------------
                                                                                  

consensus_8803#0      TTCGCGTGCGAAACATTCAAACTGGCTGTCGTAAAGAATGAATGGTTAGCTAAA 1251
consensus_8803#1      ------------------------------------------------------
consensus_8803#4      ------------------------------------------------------
consensus_8803#2      CGATCGAAAACAAAGCATCGATCGGTATGCTAAAGCCGCGATTGCAGCAACT-- 581
consensus_8803#3      ------------------------------------------------------
                                                                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)