cluster # 8857

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Anopheles gambiae
cluster # 8857 cluster # 8857 Sequences # 12 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8857#0 length = 659 sequences # 8

consensus_8857#1 length = 600 sequences # 4

consensusID : consensus_8857#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 659
fasta sequence

                              [CCGACGAGGTGTTGTTGGTCGATCGGTGTTGGGAGAAAATCCGCATCTCGATTCA-GGGGAAAAACAAAAATGTACGGCGGAAAATCACCCCAGGAGCTGCTTTCGGGCTCGTTCACGAAATCCTGGCTGCACGACAAGTGGGCCCCGCTGGTGGGTAGCGTGTTCGGATTCATCGGCGCTTGCTACGTCAACTATGGCACCGGCCGTCCAGCGCTCAGCGGCATTCAAAAGCACATCGCAGCCGCCCTAGCCGTCGGTGCCGTGGCCACCATGGCCGACAAGTGGCGTGATGCTCACTTTGCCGAGAAAGATGCCACCTTCCGCCACTACATTCAGCTGCATCCGGAAGATTTTCCTACCCCTGAGCGCAAAAAGTATGCCGATGTGCTGGAGTACTGGCAACCCATCCGTTAGGTTTACTTTCTCGTTACATTGACCCGCGGCCAACGGGATGCCGGTTTGTTGGTGACTAGTGTGTAGCGTTGATGTAAATAAAAAAAGCCCAAAAATCACTACCCAAAGCCACGAATTGGTCGCGTCCTGTTGTGCATCCTCAACAGGGCGGAAGGGTGTGCGTCCTCGATGAAACACCGAAAGTGTGAAACATGCAAAGGAAATGTGCAGATGGATTGTTGAAATTATAAAAAGAACACAACTGT]

[+] EMBL BM622934             [CCGACGAGGTGTTGTTGGTCGATCGGTGTTGGGAGAAAATCCGCATCTCGATTCA GGGGAAAAACAAAAATGTACGGCGGAAAATCACCCCAGGAGCTGCTTTCGGGCTCGTTCACGAAATCCTGGCTGCACGACAAGTGGGCCCCGCTGGTGGGTAGCGTGTTCGGATTCATCGGCGCTTGCTACGTCAACTATGGCACCGGCCGTCCAGCGCTCAGCGGCATTCAAAAGCACATCGCAGCCGCTCTAGCCGTCGGTGCCGTGGCCACCATGGCCGACAAGTGGCGTGATGCTCACTTTGCCGAGAAAGATGCCACCTTCCGCCACTACATTCAGCTGCATCCGGAAGATTTTCCTACCCCTGAGCGCAAAAAGTATGCCGATGTGCTGGAGTACTGGCAACCCATCCGTTAGGTTTACTTTCTCGTTACATTGACCCGCGGCCAACGGGATGCCGGTTTG                                                                                                                                                                                                     ]
[+] EMBL BX618937             [caaACGAGGTGTTGTTGGTCGATCGGTGTTGGGAGAAAATCCGCATCTCGATTCAGGGGGAAAAACAAAAATGTACGGCGGAAAATCACCCCAGGAGCTGCTTTCGGGCTCGTTTACGAAATCCTGGCTGCACGACAAGTGGGCCCCGCTGGTGGGTAGCGTGTTCGGATTCATCGGCGCTTGCTACGTCAACTATGGCACCGGCCGTCCAGCGCTCAGCGGCATTCAAAAGCACATCGCAACCGCCCTAGCCGTCGGTGCCGTGGCCACCATGGCCGACAA                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM590115             [                 ccgGATCGGTGTTGGGAGAAAATCCGCTTCTC ACGCA GGGGAAAAACAAAAATGTACGGCGGAAAATCACCCCAGGAGCTGCTTTCGGGCTCGTTCACGAAATCCTGGCTGCACGACAAGTGGGCCCCGCTGGTGGGTAGCGTGTTCGGATTCATCGGCGCTTGCTACGTCAACTATGGCACCGGCCGTCCAGCGCTCAGCGGCATTCAAAAGCACATCGCAGCCGCCCTAGCCGTCGGTGCCGTGGCCACCATGGCCGACAAGTGGCGTGATGCTCACTTTGCCGAGAAAGATGCCACCTTCCGCCACTACATTCAGCTGCATCCGGAAGATTTTCCTACCCCTGAGCGCAAAAAGTATGCCGATGTGCTGGAGTACTGGCAACCCATCCGTTAGGTTTACTTTCTCGTTACATTGACCCGCGGCCAACGGGATGCCGGTTTGTTGGTGACTAGTGTGTAGCGTTGATGTA                                                                                                                                                                         ]
[+] EMBL BM621501             [                             ccGGAGAAAATCCGCATCTCGATTCA GGGGAAAAACAAAAATGTACGGCGGAAAATCACCCCAGGAGCTGCTTTCGGGCTCGTTCACGAAATCCTGGCTGCACGACAAGTGGGCCCCGCTGGTGGGTAGCGTGTTCGGATTCATCGGCGCTTGCTACGTCAACTATGGCACCGGCCGTCCAGCGCTCAGCGGCATTCAAAAGCACATCGCAGCCGCTCTAGCCGTCGGTGCCGTGGCCACCATGGCCGACAAGTGGCGTGATGCTCACTTTGCCGAGAAAGATGCCACCTTCCGCCACTACATTCAGCTGCATCCGGAAGATTTTCCTACCCCTGAGCGCAAAAAGTATGCCGATGTGCTGGAGTACTGGCAACCCATCCGTTAGGTTTACTTTCTCGTTACATTGACCCGCGGCCAACGGGATGCCGGTTTGTTGGTGACTAGTGTGTAGCGTGGATGTAAATAAAAAAAGCCCAAAAATCACTACCCAAAGCCACGAATTGGTCGCGTCCTGTTGTGCATCCTCAACAGGGCGGAAGGGTGTGCGTCCTCGATGAAACACCGAAAGTGTGAAACATGCAAAGGAAATGTGCAGATGGATTGTTGAAATTATAAAAAGAACACAACTGT]
[+] EMBL BM628415             [                                    ccgTCCGCTTCTC ACGCA GGGGAAAAACAAAAATGTACGGCGGAAAATCACCCCAGGAGCTGCTTTCGGGCTCGTTCACGAAATCCTGGCTGCACGACAAGTGGGCCCCGCTGGTGGGTAGCGTGTTCGGATTCATCGGCGCTTGCTACGTCAACTATGGCACCGGCCGTCCAGCGCTCAGCGGCATTCAAAAGCACATCGCAGCCGCCCTAGCCGTCGGTGCCGTGGCCACCATGGCCGACAAGTGGCGTGATGCTCACTTTGCCGAGAAAGATGCCACCTTCCGCCACTACATTCAGCTGCATCCGGAAGATTTTCCTACCCCTGAGCGCAAAAAGTATGCCGATGTGCTGGAGTACTGGCAACCCATCCGTTAGGTTTACTTTCTCGTTACATTGACCCGCGGCCAACGGGATGCCGGTT                                                                                                                                                                                                       ]
[+] EMBL BM646772             [                                     ccgCCGCTTCTC ACGCA GGGGAAAAACAAAAATGTACGGCGGAAAATCACCCCAGGAGCTGCTTTCGGGCTCGTTCACGAAATCCTGGCTGCACGACAAGTGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM584495             [                                                               ccgAAAAATGTACGGCGGAAAATCACCCCAGGAGCTGCTTTCGGGCTCGTTCACGAAATCCTGGCTGCACGACAAGTGGGCCCCGCTGGTGGGTAGCGTGTTCGGATTCATCGGCGCTTGCTACGTCAACTATGGCACCGGCCGTCCAGCGCTCAGCGGCATTCAAAAGCACATCGCAGCCGCCCTAGCCGTCGGTGCCGTGGCCACCATGGCCGACAAGTGGCGTGATGCTCACTTTGCCGAGAAAGATGCCACCTTCCGCCACTACATTCAGCTGCATCCGGAAGATTTTCCTACCCCTGAGCGCAAAAAGTATGCCGATGTGCTGGAGTACTGGCAACCCATCCGTTAGGTTTACTTTCTCGTTACATTGACCCGCGGCCAACGGGATGCCGGTTTGTTGGTGACTAGTGTGTAGCGTTGATGTAAATAAAAAAAGCCCAAAAATCACTACCCAAAGCCACG                                                                                                                                    ]
[+] EMBL BM591082             [                                                                                                 ccGCTTTCGGGCTCGTTCACGAAATCCTGGCTGCACGACAAGTGGGCCCCGCTGGTGGGTAGCGTGTTCGGATTCATCGGCGCTTGCTACGTCAACTATGGCACCGGCCGTCCAGCGCTCAGCGGCATTCAAAAGCACATCGCAGCCGCCCTAGCCGTCGGTGCCGTGGCCACCATGGCCGATAAGTGGCGTGATGCTCACTTTGCCGAGAAAGATGCCACCTTCCGCCACTACATTCAGCTGCATCCGGAAGATTTTCCTACCCCTGAGCGCAAAAAGTATGCCGATGTGCTGGAGTACTGGCAACCCATCCGTTAGGTTTACTTTCTCGTTACATTGACCCGCGGCCAACGGGATGCCGGTTTGTTGGTGACTAGTGTGTAGCGTTGATGTAAATAAAAAAAGCCCAAAAATCACTACCC                                                                                                                                             ]




>consensus_8857#0
CCGACGAGGTGTTGTTGGTCGATCGGTGTTGGGAGAAAATCCGCATCTCGATTCAGGGGA
AAAACAAAAATGTACGGCGGAAAATCACCCCAGGAGCTGCTTTCGGGCTCGTTCACGAAA
TCCTGGCTGCACGACAAGTGGGCCCCGCTGGTGGGTAGCGTGTTCGGATTCATCGGCGCT
TGCTACGTCAACTATGGCACCGGCCGTCCAGCGCTCAGCGGCATTCAAAAGCACATCGCA
GCCGCCCTAGCCGTCGGTGCCGTGGCCACCATGGCCGACAAGTGGCGTGATGCTCACTTT
GCCGAGAAAGATGCCACCTTCCGCCACTACATTCAGCTGCATCCGGAAGATTTTCCTACC
CCTGAGCGCAAAAAGTATGCCGATGTGCTGGAGTACTGGCAACCCATCCGTTAGGTTTAC
TTTCTCGTTACATTGACCCGCGGCCAACGGGATGCCGGTTTGTTGGTGACTAGTGTGTAG
CGTTGATGTAAATAAAAAAAGCCCAAAAATCACTACCCAAAGCCACGAATTGGTCGCGTC
CTGTTGTGCATCCTCAACAGGGCGGAAGGGTGTGCGTCCTCGATGAAACACCGAAAGTGT
GAAACATGCAAAGGAAATGTGCAGATGGATTGTTGAAATTATAAAAAGAACACAACTGT

consensusID : consensus_8857#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 600
fasta sequence

                              [CCGCGGACGCGTGGGCGGTGTTGGGAGAAAATCCGCATCTCGATTCAGGGGAAAAACAAAAATGTACGGCGGAAAATCACCCCAGGAGCTGCTTTCGGGCTCGTTTACGAAATCCTGGCTGCACGACAAGTGGGCCCCGCTGGTGGGTAGCGTGTTCGGATTCATCGGCGCTTGCTACGTCAACTATGGCACCGGCCGTCCAGCGCTCAGCGGCATTCAAAAGCACATCGCAGCCGCCCTAGCCGTCGGTGCCGTGGCCACCATGGCCGACAAGTGGCGTGATGCTCACTTTGCCGAGAAAGATGCCACCTTCCGCCACTACATTCAGCTGCATCCGGAAGATTTTCCTACCCCTGAGCGCAAAAAGTATGCCGATGTGCTGGAGTACTGGCAACCCATCCGTTAGGTTTACTTTCTCGTTACATTGACCCGCGGCCAACGGGATGCCGGTTTGTTGGTGACTAGTGTGTAGCGTTGATGTAAATAAAAAAAGCCCAAAAATCACTACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCAAATTTTGCGG]

[+] EMBL BM591787             [CCGCGGACGCGTGGGCGGTGTTGGGAGAAAATCCGCATCTCGATTCAGGGGAAAAACAAAAATGTACGGCGGAAAATCACCCCAGGAGCTGCTTTCGGGCTCGTTTACGAAATCCTGGCTGCACGACAAGTGGGCCCCGCTGGTGGGTAGCGTGTTCGGATTCATCGGCGCTTGCTACGTCAACTATGGCACCGGCCGTCCAGCGCTCAGCGGCATTCAAAAGCACATCGCAGCCGCCCTAGCCGTCGGTGCCGTGGCCACCATGGCCGACAAGTGGCGTGATGCTCACTTTGCCGAGAAAGATGCCACCTTCCGCCACTACATTCAGCTGCATCCGGAAGATTTTCCTACCCCTGAGCGCAAAAAGTATGCCGATGTGCTGGAGTACTGGCAACCCATCCGTTAGGTTTACTTTCTCGTTACATTGACCCGCGGCCAACGGGATGCCGGTTTGTTGGTGACTAGTGTGTAGCGTGGATGTAAATAAAAAAAGCCCAAAAATCACTACCC                                                                                          ]
[+] EMBL BM630657             [                      ccGAGAAAATCCGCATCTCGATTCAGGGGAAAAACAAAAATGTACGGCGGAAAATCACCCCAGGAGCTGCTTTCGGGCTCGTTTACGAAATCCTGGCTGCACGACAAGTGGGCCCCGCTGGTGGGTAGCGTGTTCGGATTCATCGGCGCTTGCTACGTCAACTATGGCACCGGCCGTCCAGCGCTCAGCGGCATTCAAAAGCACATCGCAGCCGCCCTAGCCGTCGGTGCCGTGGCCACCATGGCCGACAAGTGGCGTGATGCTCACTTTGCCGAGAAAGATGCCACCTTCCGCCACTACATTCAGCTGCATCCGGAAGATTTTCCTACCCCTGAGCGCAAAAAGTATGCCGATGTGCTGGAGTA                                                                                                                                                                                                                     ]
[+] EMBL BM653988             [                                                                                                                                                                                                                                              ccgGCCGTCGGTGCCGTGGCCACCATGGCCGACAAGTGGCGTGATGCTCACTTTGCCGAGAAAGATGCCACCTTCCGCCACTACATTCAGCTGCATCCGGAAGATTTTCCTACCCCTGAGCGCAAAAAGTATGCCGATGTGCTGGAGTACTGGCAACCCATCCGTTAGGTTTACTTTCTCGTTACATTGACCCGCGGCCAACGGGATGCCGGTTTGTTGGTGACTAGTGTGTAGCGTTGATGTAAATAAAAAAAGCCC                                                                                                        ]
[+] EMBL CNS0970G             [                                                                                                                                                                                                                                                                                                                                                                                                          CCCATCCGTTAGGTTTACTTTCTCGTTACATTGACCCGCGGCCAACGGGATGCCGGTTTGTTGGTGACTAGTGTGTAGCGTTGATGTAAATAAAAAAAGCCCAAAAATCACTACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCAAATTTTGCGG]




>consensus_8857#1
CCGCGGACGCGTGGGCGGTGTTGGGAGAAAATCCGCATCTCGATTCAGGGGAAAAACAAA
AATGTACGGCGGAAAATCACCCCAGGAGCTGCTTTCGGGCTCGTTTACGAAATCCTGGCT
GCACGACAAGTGGGCCCCGCTGGTGGGTAGCGTGTTCGGATTCATCGGCGCTTGCTACGT
CAACTATGGCACCGGCCGTCCAGCGCTCAGCGGCATTCAAAAGCACATCGCAGCCGCCCT
AGCCGTCGGTGCCGTGGCCACCATGGCCGACAAGTGGCGTGATGCTCACTTTGCCGAGAA
AGATGCCACCTTCCGCCACTACATTCAGCTGCATCCGGAAGATTTTCCTACCCCTGAGCG
CAAAAAGTATGCCGATGTGCTGGAGTACTGGCAACCCATCCGTTAGGTTTACTTTCTCGT
TACATTGACCCGCGGCCAACGGGATGCCGGTTTGTTGGTGACTAGTGTGTAGCGTTGATG
TAAATAAAAAAAGCCCAAAAATCACTACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCAAATTTTGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8857#0      CCGACGAGGTGTTGTTGGTCGATCGGTGTTGGGAGAAAATCCGCATCTCGATTCAGGGGA 60
consensus_8857#1      --------CCGCGGACGCGTGGGCGGTGTTGGGAGAAAATCCGCATCTCGATTCAGGGGA 52
                                *  *  *   *  *************************************

consensus_8857#0      AAAACAAAAATGTACGGCGGAAAATCACCCCAGGAGCTGCTTTCGGGCTCGTTCACGAAA 120
consensus_8857#1      AAAACAAAAATGTACGGCGGAAAATCACCCCAGGAGCTGCTTTCGGGCTCGTTTACGAAA 112
                      ***************************************************** ******

consensus_8857#0      TCCTGGCTGCACGACAAGTGGGCCCCGCTGGTGGGTAGCGTGTTCGGATTCATCGGCGCT 180
consensus_8857#1      TCCTGGCTGCACGACAAGTGGGCCCCGCTGGTGGGTAGCGTGTTCGGATTCATCGGCGCT 172
                      ************************************************************

consensus_8857#0      TGCTACGTCAACTATGGCACCGGCCGTCCAGCGCTCAGCGGCATTCAAAAGCACATCGCA 240
consensus_8857#1      TGCTACGTCAACTATGGCACCGGCCGTCCAGCGCTCAGCGGCATTCAAAAGCACATCGCA 232
                      ************************************************************

consensus_8857#0      GCCGCCCTAGCCGTCGGTGCCGTGGCCACCATGGCCGACAAGTGGCGTGATGCTCACTTT 300
consensus_8857#1      GCCGCCCTAGCCGTCGGTGCCGTGGCCACCATGGCCGACAAGTGGCGTGATGCTCACTTT 292
                      ************************************************************

consensus_8857#0      GCCGAGAAAGATGCCACCTTCCGCCACTACATTCAGCTGCATCCGGAAGATTTTCCTACC 360
consensus_8857#1      GCCGAGAAAGATGCCACCTTCCGCCACTACATTCAGCTGCATCCGGAAGATTTTCCTACC 352
                      ************************************************************

consensus_8857#0      CCTGAGCGCAAAAAGTATGCCGATGTGCTGGAGTACTGGCAACCCATCCGTTAGGTTTAC 420
consensus_8857#1      CCTGAGCGCAAAAAGTATGCCGATGTGCTGGAGTACTGGCAACCCATCCGTTAGGTTTAC 412
                      ************************************************************

consensus_8857#0      TTTCTCGTTACATTGACCCGCGGCCAACGGGATGCCGGTTTGTTGGTGACTAGTGTGTAG 480
consensus_8857#1      TTTCTCGTTACATTGACCCGCGGCCAACGGGATGCCGGTTTGTTGGTGACTAGTGTGTAG 472
                      ************************************************************

consensus_8857#0      CGTTGATGTAAATAAAAAAAGCCCAAAAATCACTACCCAAAGCCACGAATTGGTCGCGTC 540
consensus_8857#1      CGTTGATGTAAATAAAAAAAGCCCAAAAATCACTACCCAAAAAAAAAAAA---------- 522
                      *****************************************   *  **           

consensus_8857#0      CTGTTGTGCATCCTCAACAGGGCGGAAGGGTGTGCGTCCTCGATGAAACACCGAAAGTGT 600
consensus_8857#1      ---------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 567
                                     ** *      **               *  *** *   ***    

consensus_8857#0      GAAACATGCAAAGGAAATGTGCAGATGGATTGTTGAAATTATAAAAAGAACACAACTGT 659
consensus_8857#1      AAAAAAAAAAAAAAAAAAAGGCAAATT--TTGCGG------------------------ 600
                       *** *   ***  ***   *** **   ***  *