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Anopheles gambiae
cluster # 8861 cluster # 8861       Sequences # 12       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8861#0 length = 2369 sequences # 9  
 consensus_8861#1 length = 742 sequences # 1  
consensus_8861#2 length = 698 sequences # 2  
consensusID : consensus_8861#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 2369
fasta sequence 
                              [GACCCACGCGTCCGCACGTACATCAATCCATATCTGCTGCATAATACATGCATGAAACGGGATAGTAGCAAGTAGAAAGGAATCGAGAGAGGCAAGTGTTTTCACTAACCAGCAGGCAGTGCACGTGGGGAAGCGC---AGGAAAGCAAA--AAGGTAGGGACAGTGTTAGGTCGTCCGATCGTTCTTTAGTTTCAGAAAGAGGAGATTCAATTAGTAGAATTTGAAGATTAGTAGAAAGGATGCATGGATGGAAGCGTATGTCGTGAGACCATCTTCCAACTGTCCGAGTGACAATGTGATGGAAAATGGTTCATGCAAACAATAAGGCTGTGGATTGCTCTCCCACTTTCTCTCGAACTGTCGTTTTTTTTTTTTAAAGTTCGCCATTGAAGACGGTGCTCGTCCGGCCTAGGTCACCTTGGGCAGAGAACCCACGGTGTTTATCACATACTCTCGTAACTCATCCATGAAAGAGAGAATGTTTTAGAAGCTTCCTTCCAATCGTCAATGAACTGAACCGCCATTACACTAACTAATCCGTCTACGTGTATTGCTGCAAATCTAACCCACAGAAAACAAAAATTTGATAATAGTTCTAAACACCCACCACCATCACCACCACCACCACACTATTAGACAAACAAGGTTCATTGTTATTTTGGATCTATGTTTCTTTGAAAATTCATATTCATTGTACACCTGACAAGGCGTACGAGCATGATTTGTTCACGTTTGCTTTCCGGCACACGGCACGAGTTGGCTACTTTCGTTGTTATACCCTGCACCACGTGATTGGCACGAG--TTTGCGCAAGTTCCTCACATTTAAAAGTACTTTTCCTTCTGCGTGCACAAGGAACTCTATAAACGTGCATAATTATTTTTGTGTTTCTATACTAACCGTATAATTTATCTACTCGCGTATCATATTGTGTAGTGTTTAAGTTCGTATGCATG--CTCGTCCAAGACGATATAAGTTTTTAATAGAAATACACATTATATGGCAAAGTTTGAACTCTAAAACACAGGCGCTATATTACATAGCTCCAGGTAGTAGTAACTTTTCATGCCCTTTCTTTGCGACCTCCTCTAACACGGCCTTTTGCATTAAC-----CAACTCTCCTTCCCTTCGTTCTTCCTTGCTTTGTTTGCTTAACGAAAAGCGTCATGTTCATGCTACATTTTACCGGCCAGAACTAAACACATAGACAGCTATTATACAGCTGGGATACTCTATTCCGCCACCTGCGTATGTCCGTAACGAGATCTGCATTTATTAGAAAACTAATTAAGGAACAAGCGATGTCTGGGTATAATTTACAGGAGACTATTGAAATCAGTGAAGAAGCATAACAATAATGAACAAACCACC-TTTCCTCGGTCGGGTGC-TGGCGTGTCCTTTGCAATGTAGCGGCCAGCCAACATTACGTCCACATGCCGAAAAACGAAATAGATATTTGTTCATTGCAAAAGCGAAGTGTTAGATGTTCACCTAGCAATATACACACATGCTCAAACAGAACTTAGATACCTAACGTATACTTGTAATACAGTAGAAATTCAAATGAAGTAGCCGTTAATAGCCGTTTTTCGTATTGTATTGCTCTCGGATCTTTCTTTCCTTTTTTTCCGGGAAACGGGGAGGGCTAGCAGACGATGTGATAAAAAGTGTTTCATCTTCGTCTACAGGCGGAAAGCAAGAAGGCTAGGGATAAAACTAAAAAAAAACGAAAGAGACGTAGAAAAAAGCTAGAAAGGCAATTTAGCAAAGAGACGCATATACTTCTTATATATCAACCTTTCTATGTTAGCACTAATTCTGCTCAAAGGAGAGAAACAAAGCGTGTTAAGAATGCGGCTTTACTGTTGTTTATTGAATGTGTCTTGTGTTTTTCTGTCATCTGGAGTGAATAACTAAATCAATGGATTATTTTAAAATCATACTGCTGCTCGGCCCACGCCTTCGTGTACTCTGCACGGTGCGGTTTTGTTGTTTTTGCACTGCTTCTTAACTTAACGAGATGACAATAATGGCTTCCGCGATTGCTAAACGGCAAAGGACAGGGCACGGGAAGGGGTCAATAAGCCGTTTCAAAACCAACCAAGTTTGCGGTACTATTAAAACATTTGAACTGTTTTATTTTCCACTACTTGTTACTCACTCACACCGCAAGTGTTAGACTGTGGTTTCTGTGGATGTCGCCACGCAACACACTATTGCACGACCGGAGAAGAAGCATCATAATAATAGCACCTCGGTGTGGACAGAATTCGTTTTTTTGGTTGTTTCCTACCCCTGACCGCACCTGAGGTGGGAATGAAAGCAAATACTAACAAAACATAATAGCAACAGAAATAAAGCAACTGACTGTAGGTT]

[+] EMBL BM624594             [GACCCACGCGTCCGCACGTACATCAATCCATATCTGCTGCATAATACATGCATGAAACGGGATAGTAGCAAGTAGAAAGGAATCGAGAGAGGCAAGTGTTTTCACTAACCACCAGGCAGTGCACGTGGGGAAGCGCAAAAGCAAAAAAAAAGAAGGTAGGGACAGTTTTAGGTCGCCCGATCGTTCTTTAGTTTCAGAGAGAGGAGATTCAATTAGTAGAATTTGAAGATTAGTAGAAAGGATGCATGGAT GAAGAGTATGTCGTGAGACCTTCTTCCAACTGTCCGAGTGACTATGTGATGGAAAATGGTTCATGCAAACAATAAGGCTGTGGATTGCTCTCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BX627393             [                            CATATCTCCTGCATAATACATGCATGAAACGGGATAGTAGCAAGTAGAAAGGAATCGAGAGAGGCAAGTGTTTTCACTAACCAGCAGGCAGTGCACGTGGGGAAGCGC   AGGAAAGCAAA  AAGGTAGGGACAGTGTTAGGTCGTCCGATCGTTCTTTAGTTTCAGAAAGAGGAGATTCAATTAGTAGAATTTGAAGATTAGTAGAAAGGATGCATGGATGGAAGCGTATGTCGTGAGACCATCTTCCAACTGTCCGAGTGACAATGTGATGGAAAATGGTTCATGCAAACAATAAGGCTGTGGATTGCTCTCCCACTTTCTCTCGAACTGTCGTTTTTTTTTTTTAAAGTTCGCCATTGAAGACGGTGCTCGTCCGGCCTAGGTCACCTTGGGCAGAGAACCCACGGTGTTTATCACATACTCTCGTAACTCATCCATGAAAGAGAGAATGTTTTAGAAGCTTCCTTCCAATCGTCAATGAACTGAACCGCCATTACACTAACTAATCCGTCTACGTGTATTGCTGCAAATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BX625312             [                                              CATGCATGAAACGGGATAGTAGCAAGTAGAAAGGAATCGAGAGAGGCAAGTGTTTTCACTAACCAGCAGGCAGTGCACGTGGGGAAGCGC   AGGAAAGCAAA  AAGGTAGGGACAGTGTTAGGTCGTCCGATCGTTCTTTAGTTTCAGAAAGAGGAGATTCAATTAGTAGAATTTGAAGATTAGTAGAAAGGATGCATGGATGGAAGCGTATGTCGTGAGACCATCTTCCAACTGTCCGAGTGACAATGTGATGGAAAATGGTTCATGCAAACAATAAGGCTGTGGATTGCTCTCCCACTTTCTCTCGAACTGTCGTTTTTTTTTTTTAAAGTTCGCCATTGAAGACGGTGCTCGTCCGGCCTAGGTCACCTTGGGCAGAGAACCCACGGTGTTTATCACATACTCTCGTAACTCATCCATGAAAGAGAGAATGTTTTAGAAGCTTCCTTCCAATCGTCAATGAACTGAACCGCCATTACACTAACTAATCCGTCTACGTGTATTGCTGCAAATCTAACCCACAGAAAACAAAAATTTGATAATAGTTCTAAACACCCACCACCATCACCACCACCACCACACTATTAGACAAACAAGGTTCATTGTTATTTTGGATCTATGTTTCTTTGAAAATTCATATTCATTGTACACCTGACAAGGCGTACGAGCATGATTTGTTCACGTTTGCTTTCCGGCACACGGCACGAGTTGGCTACTTTCGTTGTTATACCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BM623496             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ccGTACACCTGACAAGGCGTACGAGCATGATTTGTTCACGTTTGCTTTCCGGCACACGGCACGAGTTGGCTACTTTCGTTGTTATACCCTGCACCACGTGATTGGCACGAG  TTTGCGCAAGTTCCTCACATTTAAAAGTACTTTTCCTTCTGCGTGCACAAGGAACTCTATAAACGTGCATAATTATTTTTGTGTTTCTATACTAACCGTATAATTTATCTACTCGCGTATCATATTGTGTAGTGTTTAAGTTCGTATGCATG  CTCGTCCAAGACGATATAAGTTTTTAATAGAAATACACATTATATGGCAAAGTTTGAACTCTAAAACACAGGCGCTATATTACATAGCTCCAGGTAGTAGTAACTTTTCATGCCCTTTCTTTGCGACCTCCTCTAACACGGCCTTTTGCATTAAC     CAACTCTCCTTCCCTTCGTTCTTCCTTGCTTTGTTTGCTTAACGAAAAGCGTCATGTTCATGCTACATTTTACCGGCCAGAACTAAACACATAGACAGCTATTATACAGCTGGGATACTCTATTCCGCCACCTGCGTATGTCCGTAACGAGATCTGCATTTATTAGAAAACTAATTAAGGAACAAGCGATGTCTGGGTATAATTTACAGGAGACTATTGAAATCAGTGAAGAAGCATAACAATAATGAACAAACCACCTTTTCCTCGGTCGGGGGC TGGCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BM581280             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ccgcctcGATTGGCACGAGTTTTTGCACAAGTTCCTCACATGTAAAAGTACTTTTCCTTCTGCGTGCAAAAGGAACTATATAAACGTGCATGATTATTTTTGTGTTTCTCTACTAACCGTATAATTTATCTACTCGCGTATCATATTGTGTAGTGCTTAAGTTCGTATGCATGCTCTCGTCCAAGACGATGTAAGTTTTTAATAGAAATACACATTATATGGAAAAGTTTGAACTCTAAAACACAGGCGCTATATTACACAGCTCCAGGTAGTAGTAACTTTTCATGCCCTTTCTTTGCGACCTCCTCTAACACGACCTTTTGCATTAACCCCTTCTTCTCTTCTTTACTTCGTTCCTCCTTGCTTTGTTTGCTTTACGAAAAGCGTCATGTTCA  CTACACTTTACCGGCCAGAACTAAACACATAGACAGCTATTATACAGCTGGGATA  CTATTCCGCCACCCGCGTATGTCCGTAAC  GATCTGCATTTATTAGAAAACTAATTAAGGAACAAGCGATGTCTGGGTATAATTTACAGGAGACTATTGAAATCA   CAGAAGCATAACGATAATGAACAAACCACC TCTCCTCGGTCGGGTGCTTGGCGTGTCGTTTGCAATGTAGCGGCCAGCCAACATTACGTCCACATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX626764             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CTAAAACACAGGCGCTATATTACATAGCTCCAGGTAGTAGTAACTTTTCATGCCCTTTCTTTGCGACCTCCTCTAACACGGCCTTTTGCATTAAC     CAACTCTCCTTCCCTTCGTTCTTCCTTGCTTTGTTTGCTTAACGAAAAGCGTCATGTTCATGCTACATTTTACCGGCCAGAACTAAACACATAGACAGCTATTATACAGCTGGGATACTCTATTCCGCCACCTGCGTATGTCCGTAACGAGATCTGCATTTATTAGAAAACTAATTAAGGAACAAGCGATGTCTGGGTATAATTTACAGGAGACTATTGAAATCAGTGAAGAAGCATAACAATAATGAACAAACCACC TTTCCTCGGTC GGTGC TGGCGTGTCCTTTGCAATGTAGCGGCCAGCCAACATTACGTCCACATGCCGAAAAACGAAATAGATATTTGTTCATTGCAAAAGCGAAGTGTTAGATGTTCACCTAGCAATATACACACATGCTCAAACAGAACTTAGATACCTAACGTATACTTGTAATACAGTAGAAATTCAAATGAAGTAGCCGTTAATAGCCGTTTTTCGTATTGTATTGCTCTCGGATCTTTCTTTCCTTTTTTTCCGGGAAACGGGGAGGGCTAGCAGACGATGTGATAAAAAGTGTTTCATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BX611795             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AGTGAAGAAGCATAACAATAATGAACAAACCACC TTTCCTCGGTC GGTGC TGGCGTGTCCTTTGCAATGTAGCGGCCAGCCAACATTACGTCCACATGCCGAAAAACGAAATAGATATTTGTTCATTGCAAAAGCGAAGTGTTAGATGTTCACCTAGCAATATACACACATGCTCAAACAGAATTTAGATACCTAACGTATACTTGTAATACAGTAGAAATTCAAATGAAGTAGCCGTTAATAGCCGTTTTTCGTATTGTATTGCTCTCGGATCTTTCTTTCCTTTTTTTCCGGGAAACGGGGAGGGCTAGCAGACGATGTGATAAAAAGTGTTTCATCTTCGTCTACAGGCGGAAAGCAAGAAGGCTAGGGATAAAACTAAAAAAAAACGAAAGAGACGTAGAAAAAAGCTAGAAAGGCAATTTAGCAAAGAGACGCATATACTTCTTATATATCAACCTTTCTATGTTAGCACTAATTCTGCTCAAAGGAGAGAAACAAAGCGTGTTAAGAATGCGGCTTTACTGTTGTTTATTGAATGTGTCTTGTGTTTTTCTGTCATCTGGAGTGAATAACTAAATCAATGGATTATTTTAAAATCATACTGCTGCTCGGCCCACGCCTTCGTGTACTCTGCACGGTGCGGTTTTGTTGTTTTTGCACTGCTTCTTAACTTAACGAGATGACAATAATGGCTTCCGCGATTGCTAAACGGCAAAGGACAGGGCACGGGAAGGGGTCAATAAGC                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX611541             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ATTGCAAAAGCGAAGTGTTAGATGTTCACCTAGCAATATACACACATGCTCAAACAGAACTTAGATACCTAACGTATACTTGTAATACAGTAGAAATTCAAATGAAGTAGCCGTTAATAGCCGTTTTTCGTATTGTATTGCTCTCGGATCTTTCTTTCCTTTTTTTCCGGGAAACGGGGAGGGCTAGCAGACGATGTGATAAAAAGTGTTTCATCTTCGTCTACAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL BX611794             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TACAGGCGGAAAGCAGAAAGGCTAGGGATAAAACTAAAAAAAAACGAAAGAGACGTAGAAAAAAGCTAGAAAGGCAA TTAGCAAAGAGACGCATATACTTCTTATATATCAACCTTTCTATGTTAGCACTAATTCTGCTCAAAGGAGAGAAACAAAGCGTGTTAAGAATGCGGCTTTACTGTTGTTTATTGAATGTGTCTTGTGTTTTTCTGTCATCTGGAGTGAATAACTAAATCAATGGATTATTTTAAAATCATACTGCTGCTCGGCCCACGCCTTCGTGTACTCTGCACGGTGCGGTTTTGTTGTTTTTGCACTGCTTCTTAACTTAACGAGATGACAATAATGGCTTCCGCGATTGCTAAACGGCAAAGGACAGGGCACGGGAA GGGTCAATAAAGCGTTTCAAAACCAACCAAGTTTGCGGTACTATTAAAACATTTGAACTGTTTTATTTTCCACTACTTGTTACTCACTCACACCGCAAGTGTTAGACTGTGGTTTCTGTGGATGTCGCCACGCAACACACTATTGCACGACCGGAGAAGAAGCATCATAATAATAGCACCTCGGTGTGGACAGAATTCGTTTTTTTGGTTGTTTCCTACCCCTGACCGCACCTGAGGTGGGAATGAAAGCAAATACTAACAAAACATAATAGCAACAGAAATAAAGCAACTGACTGTAGGTT]




>consensus_8861#0
GACCCACGCGTCCGCACGTACATCAATCCATATCTGCTGCATAATACATGCATGAAACGG
GATAGTAGCAAGTAGAAAGGAATCGAGAGAGGCAAGTGTTTTCACTAACCAGCAGGCAGT
GCACGTGGGGAAGCGCAGGAAAGCAAAAAGGTAGGGACAGTGTTAGGTCGTCCGATCGTT
CTTTAGTTTCAGAAAGAGGAGATTCAATTAGTAGAATTTGAAGATTAGTAGAAAGGATGC
ATGGATGGAAGCGTATGTCGTGAGACCATCTTCCAACTGTCCGAGTGACAATGTGATGGA
AAATGGTTCATGCAAACAATAAGGCTGTGGATTGCTCTCCCACTTTCTCTCGAACTGTCG
TTTTTTTTTTTTAAAGTTCGCCATTGAAGACGGTGCTCGTCCGGCCTAGGTCACCTTGGG
CAGAGAACCCACGGTGTTTATCACATACTCTCGTAACTCATCCATGAAAGAGAGAATGTT
TTAGAAGCTTCCTTCCAATCGTCAATGAACTGAACCGCCATTACACTAACTAATCCGTCT
ACGTGTATTGCTGCAAATCTAACCCACAGAAAACAAAAATTTGATAATAGTTCTAAACAC
CCACCACCATCACCACCACCACCACACTATTAGACAAACAAGGTTCATTGTTATTTTGGA
TCTATGTTTCTTTGAAAATTCATATTCATTGTACACCTGACAAGGCGTACGAGCATGATT
TGTTCACGTTTGCTTTCCGGCACACGGCACGAGTTGGCTACTTTCGTTGTTATACCCTGC
ACCACGTGATTGGCACGAGTTTGCGCAAGTTCCTCACATTTAAAAGTACTTTTCCTTCTG
CGTGCACAAGGAACTCTATAAACGTGCATAATTATTTTTGTGTTTCTATACTAACCGTAT
AATTTATCTACTCGCGTATCATATTGTGTAGTGTTTAAGTTCGTATGCATGCTCGTCCAA
GACGATATAAGTTTTTAATAGAAATACACATTATATGGCAAAGTTTGAACTCTAAAACAC
AGGCGCTATATTACATAGCTCCAGGTAGTAGTAACTTTTCATGCCCTTTCTTTGCGACCT
CCTCTAACACGGCCTTTTGCATTAACCAACTCTCCTTCCCTTCGTTCTTCCTTGCTTTGT
TTGCTTAACGAAAAGCGTCATGTTCATGCTACATTTTACCGGCCAGAACTAAACACATAG
ACAGCTATTATACAGCTGGGATACTCTATTCCGCCACCTGCGTATGTCCGTAACGAGATC
TGCATTTATTAGAAAACTAATTAAGGAACAAGCGATGTCTGGGTATAATTTACAGGAGAC
TATTGAAATCAGTGAAGAAGCATAACAATAATGAACAAACCACCTTTCCTCGGTCGGGTG
CTGGCGTGTCCTTTGCAATGTAGCGGCCAGCCAACATTACGTCCACATGCCGAAAAACGA
AATAGATATTTGTTCATTGCAAAAGCGAAGTGTTAGATGTTCACCTAGCAATATACACAC
ATGCTCAAACAGAACTTAGATACCTAACGTATACTTGTAATACAGTAGAAATTCAAATGA
AGTAGCCGTTAATAGCCGTTTTTCGTATTGTATTGCTCTCGGATCTTTCTTTCCTTTTTT
TCCGGGAAACGGGGAGGGCTAGCAGACGATGTGATAAAAAGTGTTTCATCTTCGTCTACA
GGCGGAAAGCAAGAAGGCTAGGGATAAAACTAAAAAAAAACGAAAGAGACGTAGAAAAAA
GCTAGAAAGGCAATTTAGCAAAGAGACGCATATACTTCTTATATATCAACCTTTCTATGT
TAGCACTAATTCTGCTCAAAGGAGAGAAACAAAGCGTGTTAAGAATGCGGCTTTACTGTT
GTTTATTGAATGTGTCTTGTGTTTTTCTGTCATCTGGAGTGAATAACTAAATCAATGGAT
TATTTTAAAATCATACTGCTGCTCGGCCCACGCCTTCGTGTACTCTGCACGGTGCGGTTT
TGTTGTTTTTGCACTGCTTCTTAACTTAACGAGATGACAATAATGGCTTCCGCGATTGCT
AAACGGCAAAGGACAGGGCACGGGAAGGGGTCAATAAGCCGTTTCAAAACCAACCAAGTT
TGCGGTACTATTAAAACATTTGAACTGTTTTATTTTCCACTACTTGTTACTCACTCACAC
CGCAAGTGTTAGACTGTGGTTTCTGTGGATGTCGCCACGCAACACACTATTGCACGACCG
GAGAAGAAGCATCATAATAATAGCACCTCGGTGTGGACAGAATTCGTTTTTTTGGTTGTT
TCCTACCCCTGACCGCACCTGAGGTGGGAATGAAAGCAAATACTAACAAAACATAATAGC
AACAGAAATAAAGCAACTGACTGTAGGTT

consensusID : consensus_8861#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 742
fasta sequence 
                              [CCGCGGACGCGTGGGTGCTGGCGTGTCGTTTGCAATGTAGCGGCCAGCCAACATTACGTCCACATGCCGAAAAACGAAATAGATATTTGTTCATTGCAAAAGCGAAATGTTAGATGTTCACCTAGCAATATACACACATGCTCAAACAGAACTTAGATACCTAACGTATACTTGTAATGCAGTAGAAATTCAAATGAAGTAGCCGTTAATAGCCGTTTTTCGTATTGTATTGCTCTCGGATCTTTCTTTCCTTTTTTCCGGGAAACGGGGAGGGCTAGCAGACGATGTGATAAAAAAGTGTTTCATCTTCGTCTACAGGCGGAAAGCAAGAAGGCTAGGGATGATAGAACTAAAAAATAACGAAAGAGACGTAGAAAAAAAGCTAGAAAGGCAGTTTAGCAAAGAGACGCATATACTTCTTATATATCAACCTTTCTATGTTAGCACTAATTCTGCTCGAGGAGAGAAACAAAGCGTGTTAAGAATGCGGCTTTACTGTTGTTTATTGAATGTGTCTTGTGTTTGTGTCATCTGGAGTGAATAACTAAATCAATGGATTATTTTAAAATCATACTGCTGCTCGGCCCACACGCCGTCGTACTCTGCACGGTGCGGTTTTGTTGTTTTGCACTGCTTCTTAACTTAACGAGATGACAATAATGGCTTCCGCGATTGCTAAACGGCAAAGGACAGGGCACGGGAAGGGTCAATACAGCGTTTCAAAACCAACCAAGTTTGCGGT]

[+] EMBL BM618096             [CCGCGGACGCGTGGGTGCTGGCGTGTCGTTTGCAATGTAGCGGCCAGCCAACATTACGTCCACATGCCGAAAAACGAAATAGATATTTGTTCATTGCAAAAGCGAAATGTTAGATGTTCACCTAGCAATATACACACATGCTCAAACAGAACTTAGATACCTAACGTATACTTGTAATGCAGTAGAAATTCAAATGAAGTAGCCGTTAATAGCCGTTTTTCGTATTGTATTGCTCTCGGATCTTTCTTTCCTTTTTTCCGGGAAACGGGGAGGGCTAGCAGACGATGTGATAAAAAAGTGTTTCATCTTCGTCTACAGGCGGAAAGCAAGAAGGCTAGGGATGATAGAACTAAAAAATAACGAAAGAGACGTAGAAAAAAAGCTAGAAAGGCAGTTTAGCAAAGAGACGCATATACTTCTTATATATCAACCTTTCTATGTTAGCACTAATTCTGCTCGAGGAGAGAAACAAAGCGTGTTAAGAATGCGGCTTTACTGTTGTTTATTGAATGTGTCTTGTGTTTGTGTCATCTGGAGTGAATAACTAAATCAATGGATTATTTTAAAATCATACTGCTGCTCGGCCCACACGCCGTCGTACTCTGCACGGTGCGGTTTTGTTGTTTTGCACTGCTTCTTAACTTAACGAGATGACAATAATGGCTTCCGCGATTGCTAAACGGCAAAGGACAGGGCACGGGAAGGGTCAATACAGCGTTTCAAAACCAACCAAGTTTGCGGT]




>consensus_8861#1
CCGCGGACGCGTGGGTGCTGGCGTGTCGTTTGCAATGTAGCGGCCAGCCAACATTACGTC
CACATGCCGAAAAACGAAATAGATATTTGTTCATTGCAAAAGCGAAATGTTAGATGTTCA
CCTAGCAATATACACACATGCTCAAACAGAACTTAGATACCTAACGTATACTTGTAATGC
AGTAGAAATTCAAATGAAGTAGCCGTTAATAGCCGTTTTTCGTATTGTATTGCTCTCGGA
TCTTTCTTTCCTTTTTTCCGGGAAACGGGGAGGGCTAGCAGACGATGTGATAAAAAAGTG
TTTCATCTTCGTCTACAGGCGGAAAGCAAGAAGGCTAGGGATGATAGAACTAAAAAATAA
CGAAAGAGACGTAGAAAAAAAGCTAGAAAGGCAGTTTAGCAAAGAGACGCATATACTTCT
TATATATCAACCTTTCTATGTTAGCACTAATTCTGCTCGAGGAGAGAAACAAAGCGTGTT
AAGAATGCGGCTTTACTGTTGTTTATTGAATGTGTCTTGTGTTTGTGTCATCTGGAGTGA
ATAACTAAATCAATGGATTATTTTAAAATCATACTGCTGCTCGGCCCACACGCCGTCGTA
CTCTGCACGGTGCGGTTTTGTTGTTTTGCACTGCTTCTTAACTTAACGAGATGACAATAA
TGGCTTCCGCGATTGCTAAACGGCAAAGGACAGGGCACGGGAAGGGTCAATACAGCGTTT
CAAAACCAACCAAGTTTGCGGT

consensusID : consensus_8861#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 698
fasta sequence 
                              [CCGCCCACGCGTCCGCCCACGCGTCCGGATTCAATTAGTAGAATTTGAAGATTAGTAGAAAGGATGCATGGATGAAGAGTATGTCGTGAGACCTTCTTCCAACTGTCCGAGTGACAATGTGATGGAAAATGGTTCATGCAAACAATAAGGCTGTGGATTGCTCTCCCACTTTCTCTCGAACTGTCGTTTTTTTTTAAAGTTCGCCATTGAAGACGGTCCACGTCCGGCCTAGGTCGCCTTGGGTAGAGAACCCACGGTGTTTATCACCAACTCTCGTAACTCATCCATGAAAGAGAGAATGTTTTAAAAGCTTCCTTCCAATCGTCAATGAACTGAACCGCCATTACACTAACTAATCCGTCTACGTGTATTGCTGCAAATCTAACCCACAGAAAACAAAAATCTGATAATAGTTCTAAACAC------CCACCACCACCACCACACTATTAGACAAACAAGTTTCATTGTTATTTTGGATCCCTGTTTCTTTGAAAATTCATATTCATTGTACTCCTGACAAGGCGTACGAGCGTATGATTTGTTCCCGTTTGCCTTCCGGCACACGGCACGAGTTAGCTACTTTCGTTGTTATACCCCTGCACCTCGATAGGCACGAGTTTTGGCGCAAGTTCCTCACATGTAAAAGTACTTTTCCTTCTGCGTGCAAAAGTAACTATATAAACGTGCATGATTATTTTTGT]

[+] EMBL BM588876             [CCGCCCACGCGTCCGCCCACGCGTCCGGATTCAATTAGTAGAATTTGAAGATTAGTAGAAAGGATGCATGGATGAAGAGTATGTCGTGAGACCTTCTTCCAACTGTCCGAGTGACAATGTGATGGAAAATGGTTCATGCAAACAATAAGGCTGTGGATTGCTCTCCCACTTTCTCTCGAACTGTCGTTTTTTTTTAAAGTTCGCCATTGAAGACGGTCCACGTCCGGCCTAGGTCGCCTTGGGTAGAGAACCCACGGTGTTTATCACCAACTCTCGTAACTCATCCATGAAAGAGAGAATGTTTTAAAAGCTTCCTTCCAATCGTCAATGAACTGAACCGCCATTACACTAACTAATCCGTCTACGTGTATTGCTGCAAATCTAACCCACAGAAAACAAAAATCTGATAATAGTTCTAAACAC      CCACCACCACCACCACACTATTAGACAAACAAGTTTCATTGTTATTTTGGATCCCTGTTTCTTTGAAAATTCATATTCATTGTACTCCTGACAAGGCGTACGAGCGTATGATTTGTTCCCGTTTGCCTTCCGGCACACGGCACGAGTTAGCTACTTTCGTTGTTATACCCC                                                                                                        ]
[+] EMBL BX602897             [                                                                                                                                                                                                                                                                                                                                                                              TGTATTGCTGCAAATCTAACCCACAGAAAAC AAAATCTAATAATAGTGCTAAACACCCACCACCACCACCACCACCACACTATTAGACAAACAAGGTTTATTGTTATTTTGGATCCCTGTTTCTTTGAAAATTCGTATTCATTGTACTCCTGACAAGGCGTACGAGCGTATGATTTGTTCCCGTTTGCCTTCCGGCACACGGCACGAGTTAGCTACTTTCGTTGTTATACCCCTGCACCTCGATAGGCACGAGTTTTGGCGCAAGTTCCTCACATGTAAAAGTACTTTTCCTTCTGCGTGCAAAAGTAACTATATAAACGTGCATGATTATTTTTGT]




>consensus_8861#2
CCGCCCACGCGTCCGCCCACGCGTCCGGATTCAATTAGTAGAATTTGAAGATTAGTAGAA
AGGATGCATGGATGAAGAGTATGTCGTGAGACCTTCTTCCAACTGTCCGAGTGACAATGT
GATGGAAAATGGTTCATGCAAACAATAAGGCTGTGGATTGCTCTCCCACTTTCTCTCGAA
CTGTCGTTTTTTTTTAAAGTTCGCCATTGAAGACGGTCCACGTCCGGCCTAGGTCGCCTT
GGGTAGAGAACCCACGGTGTTTATCACCAACTCTCGTAACTCATCCATGAAAGAGAGAAT
GTTTTAAAAGCTTCCTTCCAATCGTCAATGAACTGAACCGCCATTACACTAACTAATCCG
TCTACGTGTATTGCTGCAAATCTAACCCACAGAAAACAAAAATCTGATAATAGTTCTAAA
CACCCACCACCACCACCACACTATTAGACAAACAAGTTTCATTGTTATTTTGGATCCCTG
TTTCTTTGAAAATTCATATTCATTGTACTCCTGACAAGGCGTACGAGCGTATGATTTGTT
CCCGTTTGCCTTCCGGCACACGGCACGAGTTAGCTACTTTCGTTGTTATACCCCTGCACC
TCGATAGGCACGAGTTTTGGCGCAAGTTCCTCACATGTAAAAGTACTTTTCCTTCTGCGT
GCAAAAGTAACTATATAAACGTGCATGATTATTTTTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8861#0      GACCCACGCGTCCGCACGTACATCAATCCATATCTGCTGCATAATACATGCATGAAACGG 60
consensus_8861#1      ------------------------------------------------------------
consensus_8861#2      ------------------------------------------------------------
                                                                                  

consensus_8861#0      GATAGTAGCAAGTAGAAAGGAATCGAGAGAGGCAAGTGTTTTCACTAACCAGCAGGCAGT 120
consensus_8861#1      ------------------------------------------------------------
consensus_8861#2      ------------------------------------------------------------
                                                                                  

consensus_8861#0      GCACGTGGGGAAGCGCAGGAAAGCAAAAAGGTAGGGACAGTGTTAGGTCGTCCGATCGTT 180
consensus_8861#1      ------------------------------------------------------------
consensus_8861#2      ------------------------------------------------------------
                                                                                  

consensus_8861#0      CTTTAGTTTCAGAAAGAGGAGATTCAATTAGTAGAATTTGAAGATTAGTAGAAAGGATGC 240
consensus_8861#1      ------------------------------------------------------------
consensus_8861#2      ------------------------------------------------------------
                                                                                  

consensus_8861#0      ATGGATGGAAGCGTATGTCGTGAGACCATCTTCCAACTGTCCGAGTGACAATGTGATGGA 300
consensus_8861#1      ------------------------------------------------------------
consensus_8861#2      ------------------------------------------------------------
                                                                                  

consensus_8861#0      AAATGGTTCATGCAAACAATAAGGCTGTGGATTGCTCTCCCACTTTCTCTCGAACTGTCG 360
consensus_8861#1      ------------------------------------------------------------
consensus_8861#2      ------------------------------------------------------------
                                                                                  

consensus_8861#0      TTTTTTTTTTTTAAAGTTCGCCATTGAAGACGGTGCTCGTCCGGCCTAGGTCACCTTGGG 420
consensus_8861#1      ------------------------------------------------------------
consensus_8861#2      ------------------------------------------------------------
                                                                                  

consensus_8861#0      CAGAGAACCCACGGTGTTTATCACATACTCTCGTAACTCATCCATGAAAGAGAGAATGTT 480
consensus_8861#1      ------------------------------------------------------------
consensus_8861#2      ------------------------------------------------------------
                                                                                  

consensus_8861#0      TTAGAAGCTTCCTTCCAATCGTCAATGAACTGAACCGCCATTACACTAACTAATCCGTCT 540
consensus_8861#1      ------------------------------------------------------------
consensus_8861#2      ------------------------------------------------------------
                                                                                  

consensus_8861#0      ACGTGTATTGCTGCAAATCTAACCCACAGAAAACAAAAATTTGATAATAGTTCTAAACAC 600
consensus_8861#1      ------------------------------------------------------------
consensus_8861#2      ------------------------------------------------------------
                                                                                  

consensus_8861#0      CCACCACCATCACCACCACCACCACACTATTAGACAAACAAGGTTCATTGTTATTTTGGA 660
consensus_8861#1      ------------------------------------------------------------
consensus_8861#2      ------------------------------------------------------------
                                                                                  

consensus_8861#0      TCTATGTTTCTTTGAAAATTCATATTCATTGTACACCTGACAAGGCGTACGAGCATGATT 720
consensus_8861#1      ------------------------------------------------------------
consensus_8861#2      ------------------------------------------------------------
                                                                                  

consensus_8861#0      TGTTCACGTTTGCTTTCCGGCACACGGCACGAGTTGGCTACTTTCGTTGTTATACCCTGC 780
consensus_8861#1      ------------------------------------------------------------
consensus_8861#2      ------------------------------------------------------------
                                                                                  

consensus_8861#0      ACCACGTGATTGGCACGAGTTTGCGCAAGTTCCTCACATTTAAAAGTACTTTTCCTTCTG 840
consensus_8861#1      ------------------------------------------------------------
consensus_8861#2      ------------------------------------------------------------
                                                                                  

consensus_8861#0      CGTGCACAAGGAACTCTATAAACGTGCATAATTATTTTTGTGTTTCTATACTAACCGTAT 900
consensus_8861#1      ------------------------------------------------------------
consensus_8861#2      ------------------------------------------------------------
                                                                                  

consensus_8861#0      AATTTATCTACTCGCGTATCATATTGTGTAGTGTTTAAGTTCGTATGCATGCTCGTCCAA 960
consensus_8861#1      ------------------------------------------------------------
consensus_8861#2      ------------------------------------------------------------
                                                                                  

consensus_8861#0      GACGATATAAGTTTTTAATAGAAATACACATTATATGGCAAAGTTTGAACTCTAAAACAC 1020
consensus_8861#1      ------------------------------------------------------------
consensus_8861#2      ------------------------------------------------------------
                                                                                  

consensus_8861#0      AGGCGCTATATTACATAGCTCCAGGTAGTAGTAACTTTTCATGCCCTTTCTTTGCGACCT 1080
consensus_8861#1      ------------------------------------------------------------
consensus_8861#2      ------------------------------------------------------------
                                                                                  

consensus_8861#0      CCTCTAACACGGCCTTTTGCATTAACCAACTCTCCTTCCCTTCGTTCTTCCTTGCTTTGT 1140
consensus_8861#1      ------------------------------------------------------------
consensus_8861#2      ------------------------------------------------------------
                                                                                  

consensus_8861#0      TTGCTTAACGAAAAGCGTCATGTTCATGCTACATTTTACCGGCCAGAACTAAACACATAG 1200
consensus_8861#1      ------------------------------------------------------------
consensus_8861#2      ------------------------------------------------------------
                                                                                  

consensus_8861#0      ACAGCTATTATACAGCTGGGATACTCTATTCCGCCACCTGCGTATGTCCGTAACGAGATC 1260
consensus_8861#1      ------------------------------------------------------------
consensus_8861#2      ------------------------------------------------------------
                                                                                  

consensus_8861#0      TGCATTTATTAGAAAACTAATTAAGGAACAAGCGATGTCTGGGTATAATTTACAGGAGAC 1320
consensus_8861#1      ------------------------------------------------------------
consensus_8861#2      ------------------------------------------------------------
                                                                                  

consensus_8861#0      TATTGAAATCAGTGAAGAAGCATAACAATAATGAACAAACCACCTTTCCTCGGTCGGGTG 1380
consensus_8861#1      -------------------------------------------CCGCGGACGCGTGGGTG 17
consensus_8861#2      -------------------------------------------CCGCCCACGCGTCCGCC 17
                                                                 *      **     *  

consensus_8861#0      CTGGCGTGTCCTTTGCAATGTAGCGGCCAGCCAACATTACGTCCACATGCCGAAAAACGA 1440
consensus_8861#1      CTGGCGTGTCGTTTGCAATGTAGCGGCCAGCCAACATTACGTCCACATGCCGAAAAACGA 77
consensus_8861#2      CACGCGT-CCGGATTCAAT-TAGTAGAATTTGAAGATTA---------GTAGAAAGGATG 66
                      *  ****  *   * **** ***  *      ** ****         *  ****     

consensus_8861#0      AATAGATATTTGTTCATTGCAAAAGCGAAGTGTTAGATGTTCACCTAGCAATATACACAC 1500
consensus_8861#1      AATAGATATTTGTTCATTGCAAAAGCGAAATGTTAGATGTTCACCTAGCAATATACACAC 137
consensus_8861#2      CATGGATG------------AAGAGTATGTCGTGAGACCTTCTTCCAACTGTCCGAGTG- 113
                       ** ***             ** **      ** ***  ***  * * *  *        

consensus_8861#0      ATGCTCAAACAGAACTTAGATACCTAACGTATACTTGTAATACAGTAGAAATTCAAATGA 1560
consensus_8861#1      ATGCTCAAACAGAACTTAGATACCTAACGTATACTTGTAATGCAGTAGAAATTCAAATGA 197
consensus_8861#2      ACAATGTGATGGAA----AATGGTTCATGCAAACA-ATAAGGCTGTGGATTGCTCTCCCA 168
                      *   *   *  ***     **   * * * * **   ***  * ** **          *

consensus_8861#0      AGTAGCCGTTAATAGCCGTTTTTCGTATTGTATTGCTCTCGGATCTTTCTTTCCTTTTTT 1620
consensus_8861#1      AGTAGCCGTTAATAGCCGTTTTTCGTATTGTATTGCTCTCGGATCTTTCTTTCCTTTTTT 257
consensus_8861#2      CTTTCTCTCGAACTGTCGTTTTTTTTTAAAGTTCGCCATTGAAGACGGTCCACGTCCGGC 228
                        *   *   **  * *******  *      * **  * * *         * *     

consensus_8861#0      TCCGGGAAACGGGGAGGGCTAGCAGACGATGTG-ATAAAAA-GTGTTTCATCTTCGTCTA 1678
consensus_8861#1      -CCGGGAAACGGGGAGGGCTAGCAGACGATGTG-ATAAAAAAGTGTTTCATCTTCGTCTA 315
consensus_8861#2      CTAGGTCGCCTTGGGTAGAGAACCCACGGTGTTTATCACCAACTCTCGTAACT-CATCCA 287
                         **    *  **   *  * *  *** ***  ** *  *  * *   * ** * ** *

consensus_8861#0      CAGGCGGAAAGCAAGAAGGCTAGGGATAA----AACTAAAAAAAAACGAAAGAGACGTAG 1734
consensus_8861#1      CAGGCGGAAAGCAAGAAGGCTAGGGATGATAG-AACTAAAAAATAACGAAAGAGACGTAG 374
consensus_8861#2      T-----GAAAGAGAGAATGTTTTAAAAGCTTCCTTCCAATCGTCAATGAACTGAACCGCC 342
                            *****  **** * *    *         * **     ** ***    **    

consensus_8861#0      AAAAAA-GCTAGAAAGGCAATTTA---GCAAAGAGACGCATATACTTCTTATATATCAAC 1790
consensus_8861#1      AAAAAAAGCTAGAAAGGCAGTTTA---GCAAAGAGACGCATATACTTCTTATATATCAAC 431
consensus_8861#2      ATTACA--CTAACTAATCCGTCTACGTGTATTGCTGCAAATCTAACCCACAGAAAACAAA 400
                      *  * *  ***   *  *  * **   * *  *   *  ** **   *  * * * *** 

consensus_8861#0      CTTTCTATGTTAGCACTAATTCTGCTCAAAGGAGAGAAACAAAGCGTGTTAAGAATGCGG 1850
consensus_8861#1      CTTTCTATGTTAGCACTAATTCTGCTCGA-GGAGAGAAACAAAGCGTGTTAAGAATGCGG 490
consensus_8861#2      AATCTGATAATAGTTCTAAACACCCACCA---CCACCACCACACTAT-TAGACAAACAAG 456
                        *   **  ***  ****     * * *     *  * ** *   * *  * **    *

consensus_8861#0      CTTTACTGTTGTTTATTGAATGTGTCTTGTGTTTTTCTGTCATCTGGAGTGAATAACTAA 1910
consensus_8861#1      CTTTACTGTTGTTTATTGAATGTGTCTTGTGTTTG--TGTCATCTGGAGTGAATAACTAA 548
consensus_8861#2      TTTCATTGTTATTT--TGGATCCCTGTTTCTTTGAAAATTCATATTCATTGTACTCCTGA 514
                       ** * **** ***  ** **   * **   **      **** *  * ** *   ** *

consensus_8861#0      ATCAATGGATTATTTTAAAATCATACTGCTGCTCGGCCCACGCCTTCGTGTACTCTGCAC 1970
consensus_8861#1      ATCAATGGATTATTTTAAAATCATACTGCTGCTCGGCCCACACGCCGTCGTACTCTGCAC 608
consensus_8861#2      CAAGGCGTACGAGCGTATGATT-TGTTCCCGTTTGCCTTCCGGCACACGGCAC---GAGT 570
                            * *  *   **  **  *  * * * * * *   *        * **   *   

consensus_8861#0      GGTGCGGTTTTGTTGTTTTTGCACTGCTTCTTAACTTAACGAGATGACAATAATGGCTTC 2030
consensus_8861#1      GGTGCGGTTTTGTTGTTTT-GCACTGCTTCTTAACTTAACGAGATGACAATAATGGCTTC 667
consensus_8861#2      TAGCTACTTTCGTTGTTATACCCCTGCACCTCGA-TAGGCACGAGTTTTGGCGCAAGTTC 629
                             *** ****** *  * ****  **  * *   *  **             ***

consensus_8861#0      CGCGATTGCTAAACGGCAAAGGACAGGGCACGGGAAGGGGTCAATAAGCCGTTTCAAAAC 2090
consensus_8861#1      CGCGATTGCTAAACGGCAAAGGACAGGGCACGGGAAGGG-TCAATACAGCGTTTCAAAAC 726
consensus_8861#2      CTCACATGTAAAAGTACTTTTCCTTCTGCGTGCAAAAGTAACTATATAAACGTGCATGAT 689
                      * *   **  ***   *          **  *  ** *   * ***      * **  * 

consensus_8861#0      CAACCAAGTTTGCGGTACTATTAAAACATTTGAACTGTTTTATTTTCCACTACTTGTTAC 2150
consensus_8861#1      CAACCAAGTTTGCGGT-------------------------------------------- 742
consensus_8861#2      TATTTTTGT--------------------------------------------------- 698
                       *     **                                                   

consensus_8861#0      TCACTCACACCGCAAGTGTTAGACTGTGGTTTCTGTGGATGTCGCCACGCAACACACTAT 2210
consensus_8861#1      ------------------------------------------------------------
consensus_8861#2      ------------------------------------------------------------
                                                                                  

consensus_8861#0      TGCACGACCGGAGAAGAAGCATCATAATAATAGCACCTCGGTGTGGACAGAATTCGTTTT 2270
consensus_8861#1      ------------------------------------------------------------
consensus_8861#2      ------------------------------------------------------------
                                                                                  

consensus_8861#0      TTTGGTTGTTTCCTACCCCTGACCGCACCTGAGGTGGGAATGAAAGCAAATACTAACAAA 2330
consensus_8861#1      ------------------------------------------------------------
consensus_8861#2      ------------------------------------------------------------
                                                                                  

consensus_8861#0      ACATAATAGCAACAGAAATAAAGCAACTGACTGTAGGTT 2369
consensus_8861#1      ---------------------------------------
consensus_8861#2      ---------------------------------------


Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)