cluster # 8902

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Anopheles gambiae
cluster # 8902 cluster # 8902 Sequences # 12 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8902#0 length = 467 sequences # 3
consensus_8902#1 length = 384 sequences # 5

consensus_8902#2 length = 382 sequences # 3
consensus_8902#3 length = 238 sequences # 1

consensusID : consensus_8902#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 467
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCGTGAATAGAGTGAGTGGCGAATGTTTTTAGCTGAAAATTGGGTGCAAAAATAGGCATTTCTGAATTCAACATCCTTCCAATTCCCACCAGAACGGCTCGTTTTCCACCGGAACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCCTGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCAGTGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACACACACATGCCATCCATCGGCTCGGTTAGATCTAAATAAATGTGTTTACTGATGCTGC]

[+] EMBL BM607996             [CCGCGGACGCGTGGGCGGACGCGTGGGCGTGAATAGAGTGAGTGGCGAATGTTTTTAGCTGAAAATTGGGTGCAAAAATAGGCATTTCTGAATTCAACATCCTTCCAATTCCCACCAGAACGGCTCGTTTTCCACCGGAACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCCTGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCAGTGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACACACACATGCCATCCATCGGCT                                    ]
[+] EMBL BM624919             [                             ccgATAGAGTGAGTGGCGAATGTTTTTAGCTGAAAATTGGGTGCAAAAATAGGCATTTCTGAATTCAACATCCTTCCAATTCCCACCAGAACGGCTCGTTTTCCACCGGAACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCCTGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCAGTGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACACACACATGCCATCCATCGGCTCGGTTAGATCTAAATAAATGTGTTTACTGATGCTGC]
[+] EMBL BM640781             [                                ccgGAGTGAGTGGCGAATGTTTTTAGCTGAAAATTGGGTGCAAAAATAGGCATTTCTGAATTCAACATCCTTCCAATTTCCACCAGAACGGCTCGTTTTCCACCGGAACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCCTGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCAGCGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGCCGGTACAAGCTGATGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCA    ACACACACATGCCATCCATCGGCTCGGTTAGATCTAAATAAATGTGTTTACTGATGt   ]




>consensus_8902#0
CCGCGGACGCGTGGGCGGACGCGTGGGCGTGAATAGAGTGAGTGGCGAATGTTTTTAGCT
GAAAATTGGGTGCAAAAATAGGCATTTCTGAATTCAACATCCTTCCAATTCCCACCAGAA
CGGCTCGTTTTCCACCGGAACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCCTG
ACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATC
GCTCTAATCGGAATCGGGCTCAGTGTGGTGGGACTGACCAACTACTACCGCAAGGACGCT
GATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCG
CGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACACACACATGCC
ATCCATCGGCTCGGTTAGATCTAAATAAATGTGTTTACTGATGCTGC

consensusID : consensus_8902#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 384
fasta sequence

                              [CCGGAAATATCGAGCAAAGAAAAACACGATTACGTGAATAGAAACGGCTCGTTTTCCACCGGAACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCCTGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCAGCGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACACATGCCATCCATCGGCTCGGTTAGATCTAAATAAATGTGTTTACTGATGT]

[+] EMBL BM639448             [CCGGAAATATCGAGCAAAGAAAAACACGATTACGTGAATAGAAACGGCTCGTTTTCCACCGGAACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCCTGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCAGCGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACACATGCCATCCATCGGCTCGGTTAGATCTAAATAAATGTGTTTACTGATGT]
[+] EMBL BM620762             [CCGGAAATATCGAGCAAAGAAAAACACGATTACGTGAATAGAAACGGCTCGTTTTCCACCGGAACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCCTGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCAGCGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACACATGCCATCCATCGGCTCGGTTAGATCTAAATAAATGTGTTTACTGATGT]
[+] EMBL BM596584             [               ccgGAAAAACACGATTACGTGAATAGAAACGGCTCGTTTTCCACCGGAACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCCTGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCAGCGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACACATGCCATCCATCGGCTCGGTTAGATCTAAATAAA               ]
[+] EMBL BM593566             [                                                     ccgaACCGATACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCCTGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCAGCGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACACATGCCATCCATCGGCTCGGTTAGATCTAAATAAATGTGTTTACTGATGT]
[+] EMBL BX614990             [                                                                                            AGCCGTGGCCTGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCAGCGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGg                                                                                                                                                       ]




>consensus_8902#1
CCGGAAATATCGAGCAAAGAAAAACACGATTACGTGAATAGAAACGGCTCGTTTTCCACC
GGAACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCCTGACGGCACTCTTCAAGC
GCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCG
GGCTCAGCGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGCCGGTACA
AGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCGCGCATCCGCCAGGATT
AGAACCGCAAACCAACCCAACCAACCAACACACACATGCCATCCATCGGCTCGGTTAGAT
CTAAATAAATGTGTTTACTGATGT

consensusID : consensus_8902#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 382
fasta sequence

                              [CCGCCCACGCGTCCGCATCCTTCCAATTCCCACCAGAACGGCTCGTTTTCCACCGGAACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCCTGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCAGTGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACACACACATGCCATCCATCGGCTCGGTTAGATCTAAAT-AAATGTGTTTACTGATGT]

[+] EMBL BM640620             [CCGCCCACGCGTCCGCATCCTTCCAATTCCCACCAGAACGGCTCGTTTTCCACCGGAACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCCTGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCAGTGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACACACACATGCCATCCATCGGCTCGGTTAGATCTAAAT AAATGTGTTTACTGATGT]
[+] EMBL BM632087             [                                                                 ccGGCAGCGTCTTCTCAGGCTAGCCGCGGCCTGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCAGTGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACACACACATGCCATCCATCGGCTCGGTTAGATCTAAAT AAATGTGTTTACTGATGT]
[+] EMBL BX609024             [                                                                                 AGGCTAGCCGCGGCCTGACGGCACTCTTCAAGCGCGGGTGGAACGAAATCCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCAGCGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCGCGCATCCGCCAGGATTAGAACTGCAAACCAAACCAACCAACCAACACACACACA AAGCCATCCATCGGCTCGGTTAGATCTAAATAAAATGTGT          ]




>consensus_8902#2
CCGCCCACGCGTCCGCATCCTTCCAATTCCCACCAGAACGGCTCGTTTTCCACCGGAACG
CAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCCTGACGGCACTCTTCAAGCGCGGGT
GGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCA
GTGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGCCGGTACAAGCTGA
CGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCGCGCATCCGCCAGGATTAGAACC
GCAAACCAACCCAACCAACCAACACACACACACATGCCATCCATCGGCTCGGTTAGATCT
AAATAAATGTGTTTACTGATGT

consensusID : consensus_8902#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 238
fasta sequence

                              [CACAGCAGCCGGCACCACAGCAGCCAGAGCAATGACGACGCGTCATCAGTATTAAACCGGTCGTCCGAGGACGACTCGAACGACAGTGCCTTCGCCGACAACGGTAAGCGCTGGGGCGGCGGCCCACCAACCGGACCGTACCTACCCCGCTGGTCTTAGTGGCAAACCAACCCAACCAACCAACACACACACACATGCCATCCATCGGCTCGGTTAGATCTAAATAAATGTGTTTACT]

[+] EMBL BM653502             [CACAGCAGCCGGCACCACAGCAGCCAGAGCAATGACGACGCGTCATCAGTATTAAACCGGTCGTCCGAGGACGACTCGAACGACAGTGCCTTCGCCGACAACGGTAAGCGCTGGGGCGGCGGCCCACCAACCGGACCGTACCTACCCCGCTGGTCTTAGTGGCAAACCAACCCAACCAACCAACACACACACACATGCCATCCATCGGCTCGGTTAGATCTAAATAAATGTGTTTACT]




>consensus_8902#3
CACAGCAGCCGGCACCACAGCAGCCAGAGCAATGACGACGCGTCATCAGTATTAAACCGG
TCGTCCGAGGACGACTCGAACGACAGTGCCTTCGCCGACAACGGTAAGCGCTGGGGCGGC
GGCCCACCAACCGGACCGTACCTACCCCGCTGGTCTTAGTGGCAAACCAACCCAACCAAC
CAACACACACACACATGCCATCCATCGGCTCGGTTAGATCTAAATAAATGTGTTTACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8902#0      CCGCGGACGCGTGGGCGGACGCGTGGGCGTGAATAGAGTGAGTGGCGAATGTTTTTAGCT 60
consensus_8902#2      ------------------------------------------------------------
consensus_8902#1      ------------------------------------------------------------
consensus_8902#3      ------------------------------------------------------------
                                                                                  

consensus_8902#0      GAAAATTGGGTGCAAAAATAGGCATTTCTGAATTCAACATCCTTCCAATTCCC--ACCAG 118
consensus_8902#2      ---------------------CCGCCCACGCGTCCG-CATCCTTCCAATTCCC--ACCAG 36
consensus_8902#1      ------------------CCGGAAATATCGAGCAAAGAAAAACACGATTACGTGAATAGA 42
consensus_8902#3      ------------------------------------------------------------
                                                                                  

consensus_8902#0      AACGGCTCGTTTTCCACCGGAACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCC 178
consensus_8902#2      AACGGCTCGTTTTCCACCGGAACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCC 96
consensus_8902#1      AACGGCTCGTTTTCCACCGGAACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCC 102
consensus_8902#3      ------------------------------------------------------------
                                                                                  

consensus_8902#0      TGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGA 238
consensus_8902#2      TGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGA 156
consensus_8902#1      TGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGA 162
consensus_8902#3      -------------------------------------CACAGCAGCCGGCACCACAGCAG 23
                                                           *   *  * **** *  ***   

consensus_8902#0      TCGCTCTAATCGGAATCGGGC-TCAGTGTGGTGG-GACTGACCAACTACTACCGCAAGGA 296
consensus_8902#2      TCGCTCTAATCGGAATCGGGC-TCAGTGTGGTGG-GACTGACCAACTACTACCGCAAGGA 214
consensus_8902#1      TCGCTCTAATCGGAATCGGGC-TCAGCGTGGTGG-GACTGACCAACTACTACCGCAAGGA 220
consensus_8902#3      CCAGAGCAATGACGACGCGTCATCAGTATTAAACCGGTCGTCCGAGGACGACTCGAACGA 83
                       *     ***    *   * * ****  *      *   * ** *  ** **   ** **

consensus_8902#0      CGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGC 356
consensus_8902#2      CGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGC 274
consensus_8902#1      CGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGC 280
consensus_8902#3      CAGTGCCT-TCGCCGACAACGGTAAGCGC------TGGGGCGGCGGCCCACCAACCGGAC 136
                      *  **     *****  *   *    **       **  *** * *        ***  *

consensus_8902#0      GGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACACACACA 416
consensus_8902#2      GGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACACACACA 334
consensus_8902#1      GGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACAC----A 336
consensus_8902#3      CGTACCTACCCCGCTGG-TCTTAGTGGCAAACCAACCCAACCAACCAACACACACACACA 195
                       *  *  * **  * ** *   *   *****************************    *

consensus_8902#0      TGCCATCCATCGGCTCGGTTAGATCTAAATAAATGTGTTTACTGATGCTGC 467
consensus_8902#2      TGCCATCCATCGGCTCGGTTAGATCTAAATAAATGTGTTTACTGATGT--- 382
consensus_8902#1      TGCCATCCATCGGCTCGGTTAGATCTAAATAAATGTGTTTACTGATGT--- 384
consensus_8902#3      TGCCATCCATCGGCTCGGTTAGATCTAAATAAATGTGTTTACT-------- 238
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