cluster # 8946

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Anopheles gambiae
cluster # 8946 cluster # 8946 Sequences # 13 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8946#0 length = 1180 sequences # 8
consensus_8946#1 length = 758 sequences # 3

consensus_8946#2 length = 578 sequences # 1
consensus_8946#3 length = 555 sequences # 1

consensusID : consensus_8946#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1180
fasta sequence

                              [CCGCGTAACAACTCGAGAAGCTCAGAGATGGCAAAAATCCGCAAATGGACAGTTAGTAGGCTGTGGGAGAGTAGCCGG-AAGCGCATCGGTGGTGAATGGACAAGCAGGTGATGAAAAAAAGATCCAAGCAAGCGGCGTGCGCGCACACGCACGTGCGATCACGTGTTGTGTTGTGGCTGTCGCCATTTTCCCTTCCGGGGCAGTGCGTGATAAGCGCGCCGGCAATTGTTTTCATTGGCGTTTGCGGATTTGCATTTTGTCCATTTTGCCTCTTGCCTTGCCTTCCGCTCAACCCACAACACCCAGTTTGTGCGATGTTTTGATTTTCCTCCCGATTGTGTTGTGACCGGCTTTTTTTAAAATCATTTCCCATTTGCCT---CCCCCCCAGCAATCCGGGCCCGGCTTTGAAATCATTTTTAGATAGCGCTACATCCTTACCTTAAGCTTAAGATCGTACAAAGAAAAAGGTGTTTAATTGGATTCTATTGCTTTTAAAATCAGTTTGTAGTGTTTGTTTGTTTTATTATAATAGCGCACTGCATACACATACACACATAGCCCTCTGTATGCTGTCTCACGCGCATCTATCATATTCGACGGTGTATCGTGAGGGATGATGATAGGGCTACTGTTGCTGCCGTCTCCCGGCTGGTATTGAGACTCTGAACAAACGTGGCTAATCAGGCATTTCTATTCGAAGGAACAGTAGGCGGCGCGAGCATGAGAGCGCGCGCGCGCTCGTTCTCGGTTCGAAAATAGACAGCCATTGCTCGAAACCCCCCCCATAGCTTGCGTGTGTGGCCGTGCGTCGTGGAACGGCGAGAGGATATTTTTAGCATTCGATCGGGGTCTTTCGATCGTATCGCGTGTTGTGTGATGGTGGTACCTGTGCGCTCCTGGTTTTGGGGATTTTTGAGGTCCAATATCAACCGAGCCCCAAACCGAGCGCCCGCATATACGTGAGTAGTTCCGTTGGCGCATGGAACAGCAAGTCGAACAGTCGGGGAGCCCTTTTCTTCGTTCTCCTCTCAGGTACACTGGGAACTCATGCGCGTGAGGCAAATTTTATTAGAAACTAGATAAGGTTTGTGTTTTTCCTGTGTTTTACCATTTCCTCGATTTTGATGAATTATGTGCATGTGTGAAAGTTCAAGACCGAGAAATGGGCATACAGAAGAAA]

[+] EMBL BM635922             [CCGCGTAACAACTCGAGAAGCTCAGAGATGGCAAAAATCCGCAAATGGACAGTTAGTAGGCTGTGGGAGAGTAGCCGGAAAGCGCATCGGTGGTGAATGGACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BM642451             [        ccgCTCGAGAAGCTCAGAGATGGCAAAAATCCGCAAATGGACAGTTAGTAGGCTGTGGGAGAGTAGCCGG AAGCGCATCGGTGGTGAATGGACAAGCAGGTGATGAAAAAAAGATCCAAGCAAGCGGCGTGCGCGCACACGCACGTGCGATCACGTGTTGTGTTGTGGCTGTCGCCATTTTCCCTTCCGGGGCAGTGCGTGATAAGCGCGCCGGCAATTGTTTTCATTGGCGTTTGCGGATTTGCATTTTGTCCATTTTGCCTCTTGCCTTGCCTTCCGCTCAACCCACAACACCCAGTTTGTGCGATGTTTTGATTTTCCTCCCGATTGTGTTGTGACCGGCTTTTTTTAAAATCATTTCCCATTTGCCT   CCCCCCCAGCAATCCGGGCCCGGCTTTGAAATCATTTTTAGATAGCGCTACATCCTTACCTTAAGCTTAAGATCGTACAAAGAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM628413             [                      ccGAGATGGCAAAAATCCGCAAATGGACAGTTAGTAGGCTGTGGGAGAGTAGCCGG AAGCGCATCGGTGGCGAACGGA     AGGTGATG AAAAAAGATCCATGCAAGCGGCGTGCGCGCACACGCACGTGCGATCACGTGTTGTGTTGTGGCTGTCGCCATTTTCCCTTCCGGGGCAGTGCGTGATAAGCGCGCCGGGAATTATTTTCATTGGCGTTTGCGGATTTGCATTTTGTCCATTTTGCCTCTTGTTTTGCCTTCCGCTCAACCCACAATACCCAGTTTGTGCGATGTTTTGATTTTCCTCCCGATTGTGTTGTGACCGGCTTTTTTTTTAATCATTTCCCCTTTGCCTCCCCCCCCCCAGCAATCCGGGCCCGGCTTTGAAACCATTTTTAGATAGCGCTACATCCTTACCTTAAGCTTAAGATCGTACAAAGAAAAAGGTGTTTAATTGGATTCTATTGCTTTTAAAATCAGTTTGTAGTGTTTGTTTGTTTTATTATAATAGCGCACTGCATACACATACACACATAGCCCTCTGTATGCTGTCTCACGCGCATCTATCATATTCGACGGTGTATCGTGAGGGATGATGATAGGGCTACTGTTGCTGCCGTCTCCCGGCTGGTATTGAGACTCTGAACAAACGTGGCTAATCAGGCATTTCTATTCGAAGGAACAGTAGGCGGCGCGAGCATGAAAGCGCGCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BM596915             [                                                                                                                                                                                                                                                                           ccgCTCTTGCCTTGCCTTCCGCTCAACCCACAACACCCAGTTTGTGCGATGTTTTGATTTTCCTCCCGATTGTGTTGTGACCGGCTTTTTTTAAAATCATTTCCCATTTGCCT   CCCCCCCAGCAATCCGGGCCCGGCTTTGAAATCATTTTTAGATAGCGCTACATCCTTACCTTAAGCTTAAGATCGTACAAAGAAAAAGGTGTTTAATTGGATTCTATTGCTTTTAAAATCAGTTTGTAGTGTTTGTTTGTTTTATTATAATAGCGCACTGCATACACATACACACATAGCCCTCTGTATGCTGTCTCACGCGCATCTATCATATTCGACGGTGTATCGTGAGGGATGATGATAGGGCTACTGTTGCTGCCGTCTCCCGGTTGGTATTGAGACTCTGAACAAACGTGGCTAATCAGGCATTTCTATTCGAAGGAACAGTAGGCGGCGAGAGCATGAGAGCGCGCGCGCGCTCGTTCTCGGTTCG AAATAGACAGCCATT                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AGA285012            [                                                                                                                                                                                                                                                                                                                                                                                      TTGCCTCCCCCCCCCCAGCAATCCGGGCCCGGCTTTGAAACCATTTTTAGATAGCGCTACATCCTTACCTTAAGCTTAAGATCGTACAAAGAAAAAGGTGTTTAATTGGATTCTATTGCTTTTAAAATCAGTTTGTAGTGTTTGTTTGTTTTATTATAATAGCGCACTGCATACACATACACACATAGCCCTCTGTATGCTGTCTCACGCGCATCTATCATATTCGACGGTGTATCGTGAGGGATGATGATAGGGCTACTGTTGCTGCCGTCTCCCGGCTGGTATTGAGACTCTGAACAAACGTGGCTAATCAGGCATTTCTATTCGAAGGAACAGTAGGCGGCGCGAGCATGAGAGCGCGCGCGCGCTCGTTCTCGGTTCGAAAATAGACAGCCATTGCTCGAAACCCCCCCCATA                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL AGA283724            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ATTATAATAGCGCACTGCATACACATACACACATAGCCCTCTGTATGCTGTCTCACGCGCATCTATCATATTCGACGGTGTATCGTGAGGGATGATGATAGGGCTACTGTTGCTGCCGTCTCCCGGCTGGTATTGAGACTCTGAACAAACGTGGCTAATCAGGCATTTCTATTCGAAGGAACAGTAGGCGGCGCGAGCATGAGAGCGCGCGCGCGCTCGTTCTCGGTTCGAAAATAGACAGCCATTGCTCGAAACCCCCCCCATAGCTTGCGTGTGTGGCCGTGCGTCGTGGAACGGCGAGAGGATATTTTTAGCATTCGATCGGGGTCTTTCGATCGTATCGCGTGTTGTGTGATGGTGGTACCTGTGCGCTCCTGGTTTTGGGGATTTTTGAGGTCCAATATCAACCGAGCCCCAAAaaaaa                                                                                                                                                                                                                                          ]
[+] EMBL BX627193             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AGCGCACTGCATACACATACACACATAGCCCTCTGTATGCTGTCTCACGCGCATCTATCATATTCGACGGTGTATCGTGAGGGATGATGATAGGGCTACTGTTGCTGCCGTCTCCCGGCTGGTATTGAGACTCTGAACAAACGTGGCTAATCAGGCATTTCTATTCGAAGGAACAGTAGGCGGCGCGAGCATGAGAGCGCGCGCGCGCTCGTTCTCGGTTCGAAAATAGACAGCCATTGCTCGAAACCCCCCCCATAGCTTGCGTGTGTGGCCGTGCGTCGTGGAACGGCGAGAGGATATTTTTAGCATTCGATCGGGGTCTTTCGATCGTATCGCGTGTTGTGTGATGGTGGTACCTGTGCGCTCCTGGTTTTGGGGATTTTTGAGGTCCAATATCAACCGAGCCCCAAACCGAGCGCCCGCATATACGTGAGTAGTTCCGTTGGCGCATGGAACAGCAAGTCGAACAGTCGGGGAGCCCTTTTCTTCGTTCTCCTCTCAGGTACACTGGGAACTCATGCGCGTGAGGCAAATTTTATTAGAAACTAGATAAGGTTTGTGTTTTTCCTGTGTTTTACCATTTCCTCGATTTTGATGAATTATGTGCATGTGTGAAAGTTCAAGACCGAGAAATGGGCATACAGAAGAAA]
[+] EMBL BX603933             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GGATGATGATAGGGCTACTGTTGCTGCCGTCTCCCGGCTGGTATTGAGACTCTGAACAAACGTGGCTAATCAGGCATTTCTATTCGAAGGAACAGTAGGCGGCGCGAGCATGAGAGCGCGCGCGCGCTCGTTCTCGGTTCGAAAATAGACAGCCATTGCTCGAAACCCCCCCCATAGCTTGCGTGTGTGGCCGTGCGTCGTGGAACGGCGAGAGGATATTTTTAGCATTCGATCGGGGTCTTTCGATCGTATCGCGTGTTGTGTGATGGTGGTACCTGTGCGCTCCTGGTTTTGGGGATTTTTGAGGTCCAATATCAACCGAGCCCCAAACCGAGCGCCCGCATATACGTGAGTAGTTCCGTTGGCGCATGGAACAGCAAGTCGAACAGTCGGGGAGCCCTTTTCTTCGTTCTCCTCTCAAGTACACTGGGAACTCATGCGCGTGAAGCAAATTTTATTAGAAACTAGATA                                                                                                  ]




>consensus_8946#0
CCGCGTAACAACTCGAGAAGCTCAGAGATGGCAAAAATCCGCAAATGGACAGTTAGTAGG
CTGTGGGAGAGTAGCCGGAAGCGCATCGGTGGTGAATGGACAAGCAGGTGATGAAAAAAA
GATCCAAGCAAGCGGCGTGCGCGCACACGCACGTGCGATCACGTGTTGTGTTGTGGCTGT
CGCCATTTTCCCTTCCGGGGCAGTGCGTGATAAGCGCGCCGGCAATTGTTTTCATTGGCG
TTTGCGGATTTGCATTTTGTCCATTTTGCCTCTTGCCTTGCCTTCCGCTCAACCCACAAC
ACCCAGTTTGTGCGATGTTTTGATTTTCCTCCCGATTGTGTTGTGACCGGCTTTTTTTAA
AATCATTTCCCATTTGCCTCCCCCCCAGCAATCCGGGCCCGGCTTTGAAATCATTTTTAG
ATAGCGCTACATCCTTACCTTAAGCTTAAGATCGTACAAAGAAAAAGGTGTTTAATTGGA
TTCTATTGCTTTTAAAATCAGTTTGTAGTGTTTGTTTGTTTTATTATAATAGCGCACTGC
ATACACATACACACATAGCCCTCTGTATGCTGTCTCACGCGCATCTATCATATTCGACGG
TGTATCGTGAGGGATGATGATAGGGCTACTGTTGCTGCCGTCTCCCGGCTGGTATTGAGA
CTCTGAACAAACGTGGCTAATCAGGCATTTCTATTCGAAGGAACAGTAGGCGGCGCGAGC
ATGAGAGCGCGCGCGCGCTCGTTCTCGGTTCGAAAATAGACAGCCATTGCTCGAAACCCC
CCCCATAGCTTGCGTGTGTGGCCGTGCGTCGTGGAACGGCGAGAGGATATTTTTAGCATT
CGATCGGGGTCTTTCGATCGTATCGCGTGTTGTGTGATGGTGGTACCTGTGCGCTCCTGG
TTTTGGGGATTTTTGAGGTCCAATATCAACCGAGCCCCAAACCGAGCGCCCGCATATACG
TGAGTAGTTCCGTTGGCGCATGGAACAGCAAGTCGAACAGTCGGGGAGCCCTTTTCTTCG
TTCTCCTCTCAGGTACACTGGGAACTCATGCGCGTGAGGCAAATTTTATTAGAAACTAGA
TAAGGTTTGTGTTTTTCCTGTGTTTTACCATTTCCTCGATTTTGATGAATTATGTGCATG
TGTGAAAGTTCAAGACCGAGAAATGGGCATACAGAAGAAA

consensusID : consensus_8946#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 758
fasta sequence

                              [GGCCAGAATCGGCACGAGGTCGACGGTGTATCGTGAGGGATGATGATAGGGCTACTGTTGCTGCCGTCTCCCGGCTGGTATTGAGACTCTGAACAAACGTGGCTAATCAGGCATTTCTATTCGAAGGAACAGTAGGCGGCGCGAGCATGAGAGCGCGCGCGCGCTCGTTCTCGGTTCGAAAATAGACAGCCATTGCTCGAAACCCCCATAGCTTGCGTGTGTGGCCGTGCGTCGTGGAACGGCGAGAGGATATTTTTAGCATTCGATCGGGGTCTTTCGATCGTATCGCGTGTTGTGTGATGGTGGTACCTGTGCGCTCCTGGTTTTGGGGATTTTTGAGGTCCAATATCAACCGAGCCCCAAACCGAGCGCCCGCATGCACGTGAGTAGTTCCGTTGGCGCATGGAACAGCAAGTCGAACAGTCGGGGAGCCCTTTTCTTCGTTCTCCTCTCAGGTACACTGGGAACTCATGCGCGTGAGGCAAATTTTATTAGAAACTAGATAAGGTTATGTGTTTTTCCTGTGTTTTACCATTTCCTCGATTTTGATGAATTATGTGCATGTGTGAAAGTTCAAGACCGAGAAATGAGCATACAGAAGAAATTTAGTAAGAAAAGAAAACACACA-CACAAATAACAA-GGATTGCAAGTTATTCATACAACCAA--AATACACATTTATTGTCTGTAAGCGAGCGCTGGTATTAGAGGAAAAGAGGAGTGAAATTGAAAGCAGTGTATAACAACTCTATTAAAAAAAA]

[+] EMBL BX467786             [GGCCAGAATCGGCACGAGGTCGACGGTGTATCGTGAGGGATGATGATAGGGCTACTGTTGCTGCCGTCTCCCGGCTGGTATTGAGACTCTGAACAAACGTGGCTAATCAGGCATTTCTATTCGAAGGAACAGTAGGCGGCGCGAGCATGAGAGCGCGCGCGCGCTCGTTCTCGGTTCGAAAATAGACAGCCATTGCTCGAAACCCCCATAGCTTGCGTGTGTGGCCGTGCGTCGTGGAACGGCGAGAGGATATTTTTAGCATTCGATCGGGGTCTTTCGATCGTATCGCGTGTTGTGTGATGGTGGTACCTGTGCGCTCCTGGTTTTGGGGATTTTTGAGGTCCAATATCAACCGAGCCCCAAACCGAGCGCCCGCATGCACGTGAGTAGTTCCGTTGGCGCATGGAACAGCAAGTCGAACAGTCGGGGAGCCCTTTTCTTCGTTCTCCTCTCAGGTACACTGGGAACTCATGCGCGTGAGGCAAATTTTATTAGAAACTAGATAAGGTTATGTGTTTTTCCTGTGTTTTACCATTTCCTCGATTTGGATGAATTATGTGCATGTGTGAAAGTTCAAGACCGAGAAATGAGCATACAGAAGAAATTTAGTAAGAAAAGAGAACACACAGCACAAAT ACAAGGGATTGCAAGTTATTCATACAACCAAAGAATACACATTTATTGTCTGTAAGCGAGCGCTGGTATTAGAGGAAAAGAGGAGTGAAATTGAAAGCAGT                        ]
[+] EMBL BM575573             [                                                                                                                                                                                                                                     ccgCGTGGAACGGCGAGAGGATATTTTTAGCATTCGATCGGGGTCTTTCGATCGTATCGCGTGTTGTGTGATGGTGGTACCTGTGCGCTCCTGGTTTTGGGGATTTTTGAGGTCCAATATCAACCGAGCCCCAAACCGAGCGCCCGCATGCACGTGAGTAGTTCCGTTGGCGCATGGAACAGCAAGTCGAACAGTCGGGGAGCCCTTTTCTTCGTTCTCCTCTCAGGTACACTGGGAACTCATGCGCGTGAGGCAAATTTTATTAGAAACTAGATAAGGTT TGTGTTTTTCCTGTGTTTTACCATTTCCTCGATTTTGATGAATTATGTGCATGTGTGAAAGTTCAAGACCGAGAAATGAGCATACAGAAGAAATTTAGTAAGAAAA AAAACACACA CACAAATAACAA GGATTGCAAGTTATTCATACAACCAA  AATACACATTTATTGTCTGTAAGCGAGCGCTGGTATTAGAGGAAAAGAGGAGTGAAATTGAAAGCAGTGTATAACAACTCTATT        ]
[-] EMBL AGA280255            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTTCCTGTGTTTTACCATTTCCTCGATTTTGATGAATTATGTGCATGTGTGAAAGTTCAAGACCGAGAAATGGGCATACAGAAGAAATTTAGTAAGAAAAAAAAACACACA CACAAATAACAA GGATTGCAAGTTATTCATACAACCAA  AATACACATTTATTGTCTGTAAGCGAGCGCTGGTATTAAAGGAAAAGAGGAGTGAAATTGAAAGCAGTGTATAACAACTCTATTAAAAAAAA]




>consensus_8946#1
GGCCAGAATCGGCACGAGGTCGACGGTGTATCGTGAGGGATGATGATAGGGCTACTGTTG
CTGCCGTCTCCCGGCTGGTATTGAGACTCTGAACAAACGTGGCTAATCAGGCATTTCTAT
TCGAAGGAACAGTAGGCGGCGCGAGCATGAGAGCGCGCGCGCGCTCGTTCTCGGTTCGAA
AATAGACAGCCATTGCTCGAAACCCCCATAGCTTGCGTGTGTGGCCGTGCGTCGTGGAAC
GGCGAGAGGATATTTTTAGCATTCGATCGGGGTCTTTCGATCGTATCGCGTGTTGTGTGA
TGGTGGTACCTGTGCGCTCCTGGTTTTGGGGATTTTTGAGGTCCAATATCAACCGAGCCC
CAAACCGAGCGCCCGCATGCACGTGAGTAGTTCCGTTGGCGCATGGAACAGCAAGTCGAA
CAGTCGGGGAGCCCTTTTCTTCGTTCTCCTCTCAGGTACACTGGGAACTCATGCGCGTGA
GGCAAATTTTATTAGAAACTAGATAAGGTTATGTGTTTTTCCTGTGTTTTACCATTTCCT
CGATTTTGATGAATTATGTGCATGTGTGAAAGTTCAAGACCGAGAAATGAGCATACAGAA
GAAATTTAGTAAGAAAAGAAAACACACACACAAATAACAAGGATTGCAAGTTATTCATAC
AACCAAAATACACATTTATTGTCTGTAAGCGAGCGCTGGTATTAGAGGAAAAGAGGAGTG
AAATTGAAAGCAGTGTATAACAACTCTATTAAAAAAAA

consensusID : consensus_8946#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 578
fasta sequence

                              [CCGGCCTTCCGCTCAACCCACCACACCCAGTTTGTGCGATGTTTTGATTTTCCTCCCGATTGTGTTGTGACCGGCTTTTTTATCATTTACCCTTAGCCTCCATCCCCCCCCCCCCCACAAATCCGGGCCCGGCTTTGAAACCATTTTTAGATAGCGCTACATCCTTACCTTAAGCTTAAGATCGTACAAAGAAAAAGGTGTTTAATTGGATTCTATTGCTTTTAAAATCAGTTTGTAGTGTTTGTTTGTTTTATTATAATAGCGCACTGCATACACATATAAACACATAGCCCTCTGTATGCTGTCTCACGCGCTGTATCTATCATATTCGAAGGTGTATCGGGAGGAATGATGATGATGATGATGATGATAGGGCTGCTGCTCCTGCTGTCTCCCGGCTGGTATTGAGACTCTTAACAAACGTGGCTAATCAGGCATTTCTATCCGAAGGAACAGTAGGCGGCGCGAGCATGAGAGCGAGCGCGCGCGCGTTCGTTCGCGGTTCGAAAATAGACAGCCATTGCTCGAACCCCCCGCAACATGCGTGTGTGGCCGTGCGTCGTGGAACGGCGAGAGGA]

[+] EMBL BM638237             [CCGGCCTTCCGCTCAACCCACCACACCCAGTTTGTGCGATGTTTTGATTTTCCTCCCGATTGTGTTGTGACCGGCTTTTTTATCATTTACCCTTAGCCTCCATCCCCCCCCCCCCCACAAATCCGGGCCCGGCTTTGAAACCATTTTTAGATAGCGCTACATCCTTACCTTAAGCTTAAGATCGTACAAAGAAAAAGGTGTTTAATTGGATTCTATTGCTTTTAAAATCAGTTTGTAGTGTTTGTTTGTTTTATTATAATAGCGCACTGCATACACATATAAACACATAGCCCTCTGTATGCTGTCTCACGCGCTGTATCTATCATATTCGAAGGTGTATCGGGAGGAATGATGATGATGATGATGATGATAGGGCTGCTGCTCCTGCTGTCTCCCGGCTGGTATTGAGACTCTTAACAAACGTGGCTAATCAGGCATTTCTATCCGAAGGAACAGTAGGCGGCGCGAGCATGAGAGCGAGCGCGCGCGCGTTCGTTCGCGGTTCGAAAATAGACAGCCATTGCTCGAACCCCCCGCAACATGCGTGTGTGGCCGTGCGTCGTGGAACGGCGAGAGGA]




>consensus_8946#2
CCGGCCTTCCGCTCAACCCACCACACCCAGTTTGTGCGATGTTTTGATTTTCCTCCCGAT
TGTGTTGTGACCGGCTTTTTTATCATTTACCCTTAGCCTCCATCCCCCCCCCCCCCACAA
ATCCGGGCCCGGCTTTGAAACCATTTTTAGATAGCGCTACATCCTTACCTTAAGCTTAAG
ATCGTACAAAGAAAAAGGTGTTTAATTGGATTCTATTGCTTTTAAAATCAGTTTGTAGTG
TTTGTTTGTTTTATTATAATAGCGCACTGCATACACATATAAACACATAGCCCTCTGTAT
GCTGTCTCACGCGCTGTATCTATCATATTCGAAGGTGTATCGGGAGGAATGATGATGATG
ATGATGATGATAGGGCTGCTGCTCCTGCTGTCTCCCGGCTGGTATTGAGACTCTTAACAA
ACGTGGCTAATCAGGCATTTCTATCCGAAGGAACAGTAGGCGGCGCGAGCATGAGAGCGA
GCGCGCGCGCGTTCGTTCGCGGTTCGAAAATAGACAGCCATTGCTCGAACCCCCCGCAAC
ATGCGTGTGTGGCCGTGCGTCGTGGAACGGCGAGAGGA

consensusID : consensus_8946#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 555
fasta sequence

                              [GCAGAATCNGCGCACGAGGAGAACAGAAGTACTGAAACTGGGGCTGAGGGGGAGAGAACGTTACAACTCGAGAAGCTCAGAGATGGCAAAAATCCGCAAATGGACAGTTAGTAGGCTGTGGGAGAGTAGCCGGAAGCGCATCGGTGGCGAACGGAAGGTGATGAAAAAAGATCCATGCAAGCGGCGTGCGCGCACACGCACGTGCGATCACGTGTTGTGTTGTGGCTGTCGCCATTTTCCCTTCCGGGGCAGTGCGTGATAAGCGCGCCGGGAATTATTTTCATTGGCGTTTGCGGATTTGCATTTTGTCCATTTTGCCTCTTGTTTTGCCTTCCGCTCAACCCACAATACCCAGTTTGTGCGATGTTTTGAGTTTTCCTCCCGATTGTGGTTGTGACCGGCTTTATANTGTCTGTAAATCGATTTCCCCGTTTGCCTCCCACACACCACGCCAGGCGAATCCGGGACCCGGGGCGTTTGGAAAAGCCAAATTGTTTAGGATAGGCGCTAACAATCCCTTAGCTTTAAANGCCTTAAGGATNCGGTGAACACANG]

[+] EMBL BX467341             [GCAGAATCNGCGCACGAGGAGAACAGAAGTACTGAAACTGGGGCTGAGGGGGAGAGAACGTTACAACTCGAGAAGCTCAGAGATGGCAAAAATCCGCAAATGGACAGTTAGTAGGCTGTGGGAGAGTAGCCGGAAGCGCATCGGTGGCGAACGGAAGGTGATGAAAAAAGATCCATGCAAGCGGCGTGCGCGCACACGCACGTGCGATCACGTGTTGTGTTGTGGCTGTCGCCATTTTCCCTTCCGGGGCAGTGCGTGATAAGCGCGCCGGGAATTATTTTCATTGGCGTTTGCGGATTTGCATTTTGTCCATTTTGCCTCTTGTTTTGCCTTCCGCTCAACCCACAATACCCAGTTTGTGCGATGTTTTGAGTTTTCCTCCCGATTGTGGTTGTGACCGGCTTTATANTGTCTGTAAATCGATTTCCCCGTTTGCCTCCCACACACCACGCCAGGCGAATCCGGGACCCGGGGCGTTTGGAAAAGCCAAATTGTTTAGGATAGGCGCTAACAATCCCTTAGCTTTAAANGCCTTAAGGATNCGGTGAACACANG]




>consensus_8946#3
GCAGAATCNGCGCACGAGGAGAACAGAAGTACTGAAACTGGGGCTGAGGGGGAGAGAACG
TTACAACTCGAGAAGCTCAGAGATGGCAAAAATCCGCAAATGGACAGTTAGTAGGCTGTG
GGAGAGTAGCCGGAAGCGCATCGGTGGCGAACGGAAGGTGATGAAAAAAGATCCATGCAA
GCGGCGTGCGCGCACACGCACGTGCGATCACGTGTTGTGTTGTGGCTGTCGCCATTTTCC
CTTCCGGGGCAGTGCGTGATAAGCGCGCCGGGAATTATTTTCATTGGCGTTTGCGGATTT
GCATTTTGTCCATTTTGCCTCTTGTTTTGCCTTCCGCTCAACCCACAATACCCAGTTTGT
GCGATGTTTTGAGTTTTCCTCCCGATTGTGGTTGTGACCGGCTTTATANTGTCTGTAAAT
CGATTTCCCCGTTTGCCTCCCACACACCACGCCAGGCGAATCCGGGACCCGGGGCGTTTG
GAAAAGCCAAATTGTTTAGGATAGGCGCTAACAATCCCTTAGCTTTAAANGCCTTAAGGA
TNCGGTGAACACANG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8946#0      CCGCGTAACAACTCGAGAAGCTCAGAGATGGCAAAAATCCGCAAATGGACAGTTAGTAGG 60
consensus_8946#1      ------------------------------------------------------------
consensus_8946#2      ------------------------------------------------------------
consensus_8946#3      ------------------------------------------------------------
                                                                                  

consensus_8946#0      CTGTGGGAGAGTAGCCGGAAGCGCATCGGTGGTGAATGGACAAGCAGGTGATGAAAAAAA 120
consensus_8946#1      ------------------------------------------------------------
consensus_8946#2      ------------------------------------------------------------
consensus_8946#3      ------------------------------------------------------------
                                                                                  

consensus_8946#0      GATCCAAGCAAGCGGCGTGCGCGCACACGCACGTGCGATCACGTGTTGTGTTGTGGCTGT 180
consensus_8946#1      ------------------------------------------------------------
consensus_8946#2      ------------------------------------------------------------
consensus_8946#3      ------------------------------------------------------------
                                                                                  

consensus_8946#0      CGCCATTTTCCCTTCCGGGGCAGTGCGTGATAAGCGCGCCGGCAATTGTTTTCATTGGCG 240
consensus_8946#1      ------------------------------------------------------------
consensus_8946#2      ------------------------------------------------------------
consensus_8946#3      ------------------------------------------------------------
                                                                                  

consensus_8946#0      TTTGCGGATTTGCATTTTGTCCATTTTGCCTCTTGCCTTGCCTTCCGCTCAACCCACAAC 300
consensus_8946#1      ------------------------------------------------------------
consensus_8946#2      ------------------------------------------------------------
consensus_8946#3      ------------------------------------------------------------
                                                                                  

consensus_8946#0      ACCCAGTTTGTGCGATGTTTTGATTTTCCTCCCGATTGTGTTGTGACCGGCTTTTTTTAA 360
consensus_8946#1      ------------------------------------------------------------
consensus_8946#2      ------------------------------------------------------------
consensus_8946#3      ------------------------------------------------------------
                                                                                  

consensus_8946#0      AATCATTTCCCATTTGCCTCCCCCCCAGCAATCCGGGCCCGGCTTTGAAATCATTTTTAG 420
consensus_8946#1      ------------------------------------------------------------
consensus_8946#2      ------------------------------------------------------------
consensus_8946#3      ------------------------------------------------------------
                                                                                  

consensus_8946#0      ATAGCGCTACATCCTTACCTTAAGCTTAAGATCGTACAAAGAAAAAGGTGTTTAATTGGA 480
consensus_8946#1      ------------------------------------------------------------
consensus_8946#2      ------------------------------------------------------------
consensus_8946#3      ------------------------------------------------------------
                                                                                  

consensus_8946#0      TTCTATTGCTTTTAAAATCAGTTTGTAGTGTTTGTTTGTTTTATTATAATAGCGCACTGC 540
consensus_8946#1      ------------------------------------------------------------
consensus_8946#2      ------------------------------------------------------------
consensus_8946#3      ------------------------------------------------------------
                                                                                  

consensus_8946#0      ATACACATACACACATAGCCCTCTGTATGCTGTCTCACGCGCATCTAT-CATATTCGACG 599
consensus_8946#1      -----------------------------------GGCCAGAATCGGCACGAGGTCGACG 25
consensus_8946#2      ------------------------------------------------------------
consensus_8946#3      ------------------------------------------------------------
                                                                                  

consensus_8946#0      GTGTATCGTGAGGGATGATGATAGGGCTACTGTTGCTGCCGTCTCCCGGCTGGTATTGAG 659
consensus_8946#1      GTGTATCGTGAGGGATGATGATAGGGCTACTGTTGCTGCCGTCTCCCGGCTGGTATTGAG 85
consensus_8946#2      ------------------------------------------------------------
consensus_8946#3      ------------------------------------------------------------
                                                                                  

consensus_8946#0      ACTCTGAACAAACGTGGCTAATCAGGCATTTCTATTCGAAGGAACAGTAGGCGGCGCGAG 719
consensus_8946#1      ACTCTGAACAAACGTGGCTAATCAGGCATTTCTATTCGAAGGAACAGTAGGCGGCGCGAG 145
consensus_8946#2      ----------------------CCGGC-CTTCCGCTCAAC---CCACCACAC----CCAG 30
consensus_8946#3      -----------------------------------------------------------G 1
                                                                                 *

consensus_8946#0      CATGAGAGCGCGCGCGCGCTCGTTCTCGGTTCGAAAATAGACAGCCATTGCTCGAAACCC 779
consensus_8946#1      CATGAGAGCGCGCGCGCGCTCGTTCTCGGTTCGAAAATAGACAGCCATTGCTCGAAACCC 205
consensus_8946#2      TTTGTGCGATGTTTTGATTTTCCTCCCGATTGTGTTGTGACCGGCTTTTTTATCATTTAC 90
consensus_8946#3      CA-GAATCNGCGCACGAGGAGAACAGAAGTACTGAAACTGGGGCTGAGGGGGAGAGAACG 60
                         *           *             *                        *     

consensus_8946#0      CCCCCATAGCTTGCGTGTGTGGCCGTGCGTCGTGGAACGGCGAGAGGATA-TTTTTAGCA 838
consensus_8946#1      C---CATAGCTTGCGTGTGTGGCCGTGCGTCGTGGAACGGCGAGAGGATA-TTTTTAGCA 261
consensus_8946#2      C---CTTAGCCTCCATCCCC--CCCCCCCCCACAAATCCGGGCCCGGCT--TTGAAACCA 143
consensus_8946#3      T---TACAACTCGAGAAGCTCAGAG-ATGGCAAAAATCCGCAAATGGACAGTTAGTAGGC 116
                             * *                    *    * * *     **    **   *   

consensus_8946#0      TTCGATCGGGGTCTTTCGATCGTATCGCGTGTTGTGTGATGGTGGTACCTGTGCGCTCCT 898
consensus_8946#1      TTCGATCGGGGTCTTTCGATCGTATCGCGTGTTGTGTGATGGTGGTACCTGTGCGCTCCT 321
consensus_8946#2      TTTTTAGATAGCGCTACATCCTTACCTTAAGCT-TAAGATCGTACAAAGAAAAAGGTGTT 202
consensus_8946#3      TGTGGGAGAGTAGCCGGAAGCGCATCGGTGGCGAACGGAAGGTGATGAAAAAAGATCCAT 176
                      *                   *  * *    *      **  **                *

consensus_8946#0      GGTTTTGGGGATTTTTGAGGTCCAATATCAACCGAGCCCCAAACCGAGCGCCCGCATATA 958
consensus_8946#1      GGTTTTGGGGATTTTTGAGGTCCAATATCAACCGAGCCCCAAACCGAGCGCCCGCATGCA 381
consensus_8946#2      TAATT--GGATTCTATTGCTTTTAAAATCAGTT------TGTAGTGTTTGTTTGT-TTTA 253
consensus_8946#3      GCAAGCGGCGTGCGCGCACACGCACGTGCGATCA-----CGTGTTGTGTTGTGGC-TGT- 229
                             *               *    *                *       *  *   

consensus_8946#0      CGTGAGTAGTTCCGTTGGCGCATGGAACAGCAAGTCGAACAGTCGGGGAGCCCTTTTCTT 1018
consensus_8946#1      CGTGAGTAGTTCCGTTGGCGCATGGAACAGCAAGTCGAACAGTCGGGGAGCCCTTTTCTT 441
consensus_8946#2      TTATAATAGCGCACTGCATACACATATAAACACAT--AGCCCTCTGTATGCTGTCTCACG 311
consensus_8946#3      CGCCATTTTCCCTTCCGGGGCAGTGCGTGATA-----AGCGCGCCGGGAATTATTTTCAT 284
                          * *    *        **         *     * *   * *       * *    

consensus_8946#0      CGTTCTCCTCTCAGGTACACTGGGAACTCATGCGCGTGAGGCAAATTTTATTAGAAACTA 1078
consensus_8946#1      CGTTCTCCTCTCAGGTACACTGGGAACTCATGCGCGTGAGGCAAATTTTATTAGAAACTA 501
consensus_8946#2      CGCTG---TATCTATCATATTCGAAGGTGTATCGGGAGGAATGATGATGATGATGATGAT 368
consensus_8946#3      TGGCGTTTGCGGATTTGCATTTTG---TCCATTTTGCCTCTTGTTTTGCCTTCCGCTCAA 341
                       *                * *      *       *              *         

consensus_8946#0      GATAAGGTT-TGTGTTTTTCCTGTGTTTTACCATTTCCTCGATTTTGATGAATTATGTGC 1137
consensus_8946#1      GATAAGGTTATGTGTTTTTCCTGTGTTTTACCATTTCCTCGATTTTGATGAATTATGTGC 561
consensus_8946#2      GATAGGGCTGC-TGCTCCTGCTGTCTCCCGGC-TGGTATTGAGACTCTTAACAAACGTGG 426
consensus_8946#3      CCCACAATACCCAGTTTGTGCGATGTTTTGAGTTTTCCTCCCGATTGTGGTTGTGACCGG 401
                         *         * *  * *  * *       *    *      *            * 

consensus_8946#0      ATGTGTGAAAGTTCAAGACCGAGAAATGGGCATACAGAAGAAA----------------- 1180
consensus_8946#1      ATGTGTGAAAGTTCAAGACCGAGAAATGAGCATACAGAAGAAATTTAGTAAGAAAAGAAA 621
consensus_8946#2      CTAATCAGGCATTTCTATCCGAAGGAACAGTAGGCGGCGCGAGCATGAGAGCGAGCGCGC 486
consensus_8946#3      CTTTATANTGTCTGTAAATCGATTTCCCCGTTTGCCTCCCACACACCACGCCAGGCGAAT 461
                       *          *      ***       *    *                         

consensus_8946#0      ------------------------------------------------------------
consensus_8946#1      ACACACACACAAATAA--CAAGGATTGCAAGTTATTCATACAACCAAAATACACATTTAT 679
consensus_8946#2      GCGCGTTCGTTCGCGGTTCGAAAATAGACAGCCATTGCTCGAACCC---CCCGCAACATG 543
consensus_8946#3      CCG-GGACCCGGGGCGTTTGGAAAAGCCAAATTGTT--TAGGATAGGCGCTAACAATCCC 518
                                                                                  

consensus_8946#0      ------------------------------------------------------------
consensus_8946#1      TGTCTGTAAGCGAGCGCTGGTATTAGAGGAAAAGAGGAGTGAAATTGAAAGCAGTGTATA 739
consensus_8946#2      CGTGTGTGGCCGTGCGTCG---TGGAACGGCGAGAGGA---------------------- 578
consensus_8946#3      TTAGCTTTAAANGCCTTAAGGATNCGGTGAACACANG----------------------- 555
                                                                                  

consensus_8946#0      -------------------
consensus_8946#1      ACAACTCTATTAAAAAAAA 758
consensus_8946#2      -------------------
consensus_8946#3      -------------------