cluster # 9039

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Anopheles gambiae
cluster # 9039 cluster # 9039 Sequences # 13 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9039#0 length = 1765 sequences # 9

consensus_9039#1 length = 639 sequences # 2
consensus_9039#2 length = 521 sequences # 2

consensusID : consensus_9039#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1765
fasta sequence

                              [CATCTCTTTCGTCTCATTTATTATTAGCTCCCGCACAAATGCATCCCACTATTTAACGTTGCACTCGTTCTTTCACTCACCGATCTATCCCACCATCATCGACACCAGTGCATGAGATGTCGGTGATGCAAAACAGTTTAAGAAACGGGATCACCCTAAACGGAACGAACTAACATATTAAAAATAATCGCTTGTCAATACACTAACGGGTACAGCTGCAGCCATTCGTTATGTTTTAGTGCCCGGACGATTGCCTTCGCCCACCGTTGTCGGTCGTTCATGCGTTGGCCCTCGTGTGTTTCCAAGGTGTGGCGAAAAATTGATGTAGTAAAATTGGTAGATAGATAGATAC----AGAGAGAGCACTTTTGTCGTTATGCACATCCCAT-CCCGCAGTACACTCTCCATTGTTCTGGCTTGCTATACATTAGAAAGGTGAGAGGGGCCTGTGTTGGAATAGGAATGCTTGTGATGATATCGCTAATCGTTGGAGCAAATCGTCTTTCGACGTCGATTGCACATCTAATGCCCTTCAAACAACCGACGGCTCCCGATCAGTGCACATCAGCGCCGATCAGTGCGGATCATCGTGCAAAGGGGGAATAGCGCTGACCGCGTTGGCGATATTTTGGATACGATAAAAAGGTTCACTACTTTTAAATATATTCAACATGTTCATGTTCGTCCCGCTGACGCTGAGCACAGAAAATCTTCTCGAGCGTATCGTTGTCTAGTTCGTAGACGTTCTCTACAGGAATAATGTGTCTCTATGGGGCAGTCGAAGAAGTCGTACCTGAAATATGTGTTCGTTTTGCGTATACGTGTCCTTGTGTCTGGCGTGTCTGTCCTGTCGCGGTCCTACCGATGAGGGGAAGTCCTGGATTGCATACCGCAAGGGTACGCTGTCCCGCCCCGCACTGTATCGTCGATTGGAAGTTTTGTTTTATCTTTAAGTTTCCATACGATTGATGCACGCTAATGCTGCGTTTCCTGCTTATTCGCCGGAGGACACGTTGGG-TACGCATGGGCGACACCTTCCTACATGAAAAACTCCTCCGTTGAATGGGACAGCGGCAGTCACGTACGCCCCGGCCGGTCCAGTATGG-AAATTTCTATTACGCGCAGCCCGCGATACACTGGGTCCGTGATCTGTAGTCCCTTTGGATTGTACACCCGCTCGTTCTGCATCGCAATATATTTCGACACCTTCCGGAGACACTTTTCGTAGTGCGTTTCCGTGCAAATGTAGATCAAGTACGCCGTGATACAGGCCAGACAGCCCTCGCAGTACGTGCTGCAGGAGCCTTTCTCCGCCTCCGCGAAATATTCGTTCAGTTTGTTCATGGTGCTCTCGAAAGTGTGTCTATCGATCCTACTCTCCAACTCCGGGGGGAAACGGTTCTGGAACTTTACCGACGTGCCTTCGCTGTAATCCCGCTGGATGAATACTTTCATGTAGTTTGGCTGGGTGGTGGCCGGTGTGCCCGGCTGGGACATTCGTACATTGGCCATAGCGGATGCTAGCTCGCGGGTTAGTTGCTAGTGCCCCCGTTTTGTTGTTTTTGCTGAACGCTCTCCCTTTGTGTCGTTTACATGAACGTACGCAAAATGCAGCACACAATCTTGCACAGTCACCACTCGACGTAGATTTCCGTGTAGCGAATTAGCTAACACATTTAGCAGTGGCAATATAGAACAGCGCTGAGCCGTACGGTCGAGGAAAAATTGCAAAAAGTATCAAATTTCTGCCACCGAAATCG-GTCCGCGG]

[+] EMBL CNS09KTY             [CATCTCTTTCGTCTCATTTATTATTAGCTCCCGCACAAATGCATCCCACTATTTAACGTTGCACTCGTTCTTTCACTCACCGATCTATCCCACCATCATCGACACCAGTGCATGAGATGTCGGTGATGCAAAACAGTTTAAGAAACGGGATCACCCTAAACGGAACGAACTAACATATTAAAAATAATCGCTTGTCAATACACTAACGGGTACAGCTGCAGCCATTCGTTATGTTTTAGTGCCCGGACGATTGCCTTCGCCCACCGTTGTCGGTCGTTCATGCGTTGGCCCTCGTGTGTTTCCAAGGTGTGGCGAAAAATTGATGTAGTAAAATTGGTAGATAGATAGATAC    AGAGAGAGCACTTTTGTCGTTATGCACATCCCAT CCCGCAGTACACTCTCCATTGTTCTGGCTTGCTATACATTAGAAAGGTGAGAGGGGCCTGTGTTGGAATAGGAATGCTTGTGATGATATCGCTAATCGTTGGAGCAAATCGTCTTTCGACGTCGATTGCACATCTAATGCCCTTCAAACAACCGACGGCTCCCGATCAGTGCACATCAGCGCCGATCAGTGCGGATCATCGTGCAAAGGGGGAATAGCGCTGACCGCGTTGGCGATATTTTGGATACGATAAAAAGGTTCACTACTTTTAAATATATTCAACATGTTCATGTTCGTCCCGCTGACGCTGAGCACAGAAAATCTTCTCGAGCGTATCGTTGTCTAGTTCGTAGACGTTCTCTACAGGAATAATGTGTCTCTATGGGGCAGTCGAAGAAGTCGTACCTGAAATATGTGTTCGTTTTGCGTATACGTGTCCTTGTGTCTGGCGTGTCTGTCCTGTCGCGGTCCTACCGATGAGGGGAAGTCCTGGATTGCATACCGCAAGGGTACGCTGTCCCGCCCCGCACTGTATCGTCGATTGGAAGTTTTGTTTTATCTTTAAGTTTCCATACGATTGATGCACGCTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CNS09308             [   CTCTTTCGTCTCATTTATTATTAGCTCCCGCACAAATGCATCCCACTATTTAACGTTGCACTCGTTCTTTCACTCACCGATCTA CCCACCATCATCGACACCAGTGCATGAGATGTCGGTGATGCAAAACAGTTTAAGAAACGGGATCACCCTAAACGGAACGAACTAACATATTAAAAATAATCGCTTGTCAATACACTAACGGGTACAGCTGCAGCCATTCGTTATGTTTTAGTGCCCGGACGATTGCCTTCGCCCACCGTTGTCGGTCGTTCATGCGTTGGCCCTCGTGTGTTTCCAAGGTGTGGCGAAAAATTGATGTAGTAAAATTGGTAGATAGATAGATAC    AGAGAGAGCACTTTTGTCGTTATGCACATCCCAT CCCGCAGTACACTCTCCATTGTTCTGGCTTGCTATACATTAGAAAGGTGAGAGGGGCCTGTGTTGGAATAGGAATGCTTGTGATGATATCGCTAATCGTTGGAGCAAATCGTCTTTCGACGTCGATTGCACATCTAATGCCCTTCAAACAACCGACGGCTCCCGATCAGTGCACATCAGCGCCGATCAGTGCGGATCATCGTGCAAAGGGGGAATAGCGCTGACCGCGTTGGCGATATTTTGGATACGATAAAAAGGTTCACTACTTTTAAATATATTCAACATGTTCATGTTCGTCCCGCTGACGCTGAGCACAGAAAATCTTCTCGAGCGTATCGTTGTCTAGTTCGTAGACGTTCTCTACAGGAATAATGTGTCTCTATGGGGCAGTCGAAGAAGTCGTACCTGAAATATGTGTTCGTTTTGCGTATACGTGTCCTTGTGTCTGGCGTGTCTGTCCTGTCGCGGTCCTACCGATGAGGGGAAGTCCTGGATTGCATACCGCAAGGGTACGCTGTCCCGCCCCGCACTGTATCGTCGATTGGAAGTTTTGTTTTATCTTTAAGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL BX611975             [                                                                TCGTTCTTTCACTCACCGATCTATCCCACCATCATCGACACCAGTGCATGAGATGTCGGTGATGCAAAACAGTTCAAGAAACGGGATCACCCTAAACGGAACGAACTAACATATTAAAAATAATCGCTTGTCAATACACTAACGGGTACAGCTGCAGCCATTCGTTATGTTTTAGTGCCCGGACGATTGCCTTCGCCCAACGTTGTCGGTCGTTCATGCGATGGCCCTCGTGTGTTTCCAAGGTGTGGCGAAAAATTGATGTAGTAAAATTGGTAGATAGATTGATACAGAAAGAGAGAGCACTTTTGTCGTTATGCACATCCCATCCCCGCAGTTCACTCTCCATTGTTCTGGCTTACTATACATTAGAAAGGTGAGAGGGGCCTGTGTTGGAATAGGAATGCTTGTGATGATATCGGTAATTGTTGGAGCAAATCGTCTTTCGAAGTCGATTGCACATCTAATGCCCTTCAAACAACCGACGGCTCCCGATCAGTGCACATCAGCGCCGATCAGTGCGGATCATCGTGCAAAGGGGGAATAGCGCTGACCGCGTTGGCGATATTTTGGATACGATAAAAAGGTTCACTACTTTTAAATATATTCAACATGTTCATGTTCGTCCCGCTGACGCTGAGCACAG AAATCTTCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL BX617398             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTTCACTACTTTTAAATATATTCAACATGTTCATGTTCGTCCCGCTGACGCTGAGCACAG GAATCTTCTCGAGCGTATCGTTGTCTAGTTCGTAGACGTTCTCTACAGGAATAATGTGTCTCTATGGGGCAGTCGAAGAAGTCGTACCTGAAATATGTGTTCGTTTTGCGTATACGTGTCCTTGTGTCTGGCGTGTCTGTCCTGTCGCGGTCCTACCGATGAGGGGAAGTCCTGGATTGCATACCGCAAGGGTACGCTGTCCCGCCCCGCACTGTATCGTCGATTGGAAGTTTTGTTTTATCTTTAAGTTTCCATACGATTGCTGCACGCTAATGCTGCGTTTCCTGCTTATTCGCCGGAGGACACGTTGGGCTACGCATGGGCGACACCTTCCTACATGAAAAACTCCTCCGTTGAATGGGACAGCGGCAGTCACGTACGCCCCGGCCGGTCCAGTATGG AAATTTCTATTACGCGCAGCCCGCGATACACTGGGTCCGTGATCTGTAGTCCCTTTGGATTGTACACCCGCTCGTTCTGCATCGCAATATATTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CNS09307             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGTTCGTTTTGCGTATACGTGTCCTTGTGTCTGGCGTGTCTGTCCTGTCGCGGTCCTACCGATGAGGGGAAGTCCTGGATTGCATACCGCAAGGGTACGCTGTCCCGCCCCGCACTGTATCGTCGATTGGAAGTTTTTTTTTATCTTTAAGTTTCCATACGATTGATGCACGCTAATGCTGCGTTTCCTGCTTATTCGCCGGAGGACACGTTGGG TACGCATGGGCGACACCTTCCTACATGAAAAACTCCTCCGTTGAATGGGACAGCGGCAGTCACGTACGCCCCGGCCGGTCCAGTATGG AAATTTCTATTACGCGCAGCCCGCGATACACTGGGTCCGTGATCTGTAGTCCCTTTGGATTGTACACCCGCTCGTTCTGCATCGCAATATATTTCGACACCTTCCGGAGACACTTTTCGTAGTGCGTTTCCGTGCAAATGTAGATCAAGTACGCCGTGATACAGGCCAGACAGCCCTCGCAGTACGTGCTGCAGGAGCCTTTCTCCGCCTCCGCGAAATATTCGTTCAGTTTGTTCATGGTGCTCTCGAAAGTGTGTCTATCGATCCTACTCTCCAACTCCGGGGGGAAACGGTTCTGGAACTTTACCGACGTGCCTTCGCTGTAATCCCGCTGGATGAATACTTTCATGTAGTTTGGCTGGGTGGTGGCCGGTGTGCCCGGCTGGGACATTCGTACATTGGCCATAGCGGATGCTAGCTCGCGTGTTAGTTGCTAGTGCCCCCGTTGTGTTGTTTTTACTGAACGCTCTCCCTTTGTGTCGTTTACATGAACGTACGCAAAATGCAGCACACAATCTTGCACAGTCACCACTCGACGTAGATTTCCGTGTAGCGAATTAGCTAACACA TTAGCAGTGGCAATATAGAACAGCGCTG                                                                 ]
[-] EMBL BM621798             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 cCCGTTGAATGGGACAGCGGCAGTCACGTACGCCCCGGCCGGTCCAGTATGGAAAATTTCTATTACGCGCAGCCCGCGATACACTGGGTCCGTGATCTGTAGTCCCTTTGGATTGTACACCCGCTCGTTCTGCATCGCAATATATTTCGACACCTTCCGGAGACACTTTTCGTAGTGCGTTTCCGTGCAAATGTAGATCAAGTACGCCGTGATACAGGCCAGACAGCCCTCGCAGTACGTGCTGCAGGAGCCTTTCTCCGCCTCCGCGAAATATTCGTTCAGTTTGTTCATGGTGCTCTCGAAAGTGTGTCTATCGATCCTACTCTCCAACTCCGGGGGGAAACGGTTCTGGAACTTTACCGACGTGCCTTCGCTGTAATCCCGCTGGATGAATACTTTCATGTAGTTTGGCTGGGTGGTGGCCGGTGTGCCCGGCTGGGACATTCGTACATTGGCCATAGCGGATGCTAGCTCGCGGGTTAGTTGCTAGTGCCCCCGTTTTGTTGTTTTTGCTGAACGCTCTCCCTTTGTGTCGTTTACATGAACGTACGCAAAATGCAGCACACAATCTTGCACAGTCACCACTCGACGTAGATTTCCGTGTAGCGAATTAGCTAACACATTTAGCAGTGGCAATATAGAACAGCGCTGAGCCGTACGGTCGAGGAAAAATTGCAAAAAGTATCAAATTTCTGCCACCGAAATCG G       ]
[-] EMBL BM587221             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CGTTGAATGGGACAGCGGCAGTCACGTACGCCCCGGCCGGTCCAGTATGG AAATTTCTATTACGCGCAGCCCGCGATACACTGGGTCCGTGATCTGTAGTCCCTTTGGATTGTACACCCGCTCGTTCTGCATCGCAATATATTTCGACACCTTCCGGAGACACTTTTCGTAGTGCGTTTCCGTGCAAATGTAGATCAAGTACGCCGTGATACAGGCCAGACAGCCCTCGCAGTACGTGCTGCAGGAGCCTTTCTCCGCCTCCGCGAAATATTCGTTCAGTTTGTTCATGGTGCTCTCGAAAGTGTGTCTATCGATCCTACTCTCCAACTCCGGGGGGAAACGGTTCTGGAACTTTACCGACGTGCCTTCGCTGTAATCCCGCTGGATGAATACTTTCATGTAGTTTGGCTGGGTGGTGGCCGGTGTGCCCGGCTGGGACATTCGTACATTGGCCATAGCGGATGCTAGCTCGCGGGTTAGTTGCTAGTGCCACCGTTTTGTTGTTTTTGCTGAACGCTCTCCCTTTGTGTCGTTTACATGAACGTACGCAAAATGCAGCACACAATCTTGCACAGTCACCACTCGACGTAGATTTCCGTGTAGCGAATTAGCTAACACATTTAGCAGTGGCAATATAGAACAGCGCTGAGCCGg                                                           ]
[-] EMBL BM612655             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTCACGTACGCCCCGGCCGGTCCAGTATGG AAATTTCTATTACGCGCAGCCCGCGATACACTGGGTCCGTGATCTGTAGTCCCTTTGGATTGTACACCCGCTCGTTCTGCATCGCAATATATTTCGACACCTTCCGGAGACACTTTTCGTAGTGCGTTTCCGTGCAAATGTAGATCAAGTACGCCGTGATACAGGCCAGACAGCCCTCGCAGTACGTGCTGCAGGAGCCTTTCTCCGCCTCCGCGAAATATTCGTTCAGTTTGTTCATGGTGCTCTCGAAAGTGTGTCTATCGATCCTACTCTCCAACTCCGGGGGGAAACGGTTCTGGAACTTTACCGACGTGCCTTCGCTGTAATCCCGCTGGATGAATACTTTCATGTAGTTTGGCTGGGTGGTGGCCGGTGTGCCCGGCTGGGACATTCGTACATTGGCCATAGCGGATGCTAGCTCGCGGGTTAGTTGCTAGTGCCCCCGTTTTGTTGTTTTTGCTGAACGCTCTCCCTTTGTGTCGTTTACATGAACGTACGCAAAATGCAGCACACAATCTTGCACAGTCACCACTCGACGTAGATTTCCGTGTAGCGAATTAGCTAACACATTTAGCAGTGGCAATATAGAACAGCGCTGAGCCGTACGGTCGAGGAAAAATTGCAAAAAGTATCAAATTTCTGCCACCCCCA CGCGTCCGCGG]
[-] EMBL CNS09KTX             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    cttccttTCCATTATTG AAATTTCTATTACGCGCAGCCCGCGATACACTGGGTCCGTGATCTGTAGTCCCTTTGGATTGTACACCCGCTCGTTCTGCATCGCAATATATTTCGACACCTTCCGGAGACACTTTTCGTAGTGCGTTTCCGTGCAAATGTAGATCAAGTACGCCGTGATACAGGCCAGACAGCCCTCGCAGTACGTGCTGCAGGAGCCTTTCTCCGCCTCCGCGAAATATTCGTTCAGTTTGTTCATGGTGCTCTCGAAAGTGTGTCTATCGATCCTACTCCCCAACTCCGGGGGGAAACGGTTCTGGAACTTTACCGACGTGCCTTCGCTGTAATCCCGCTGGATGAATACTTTCATGTAGTTTGGCTGGGTGGTGGCCGGTGTGCCCGGCTGGGACATTCGTACATTGGCCATAGCGGATGCTAGCTCGCGTGTTAGTTGCTAGTGCCCCCGTTGTGTTGTTTTTACTGAACGCTCTCCCTTTGTGTCGTTTACATGAACGTACGCAAAATGCAGCACACAATCTTGCACAGTCACCACTCGACGTAGATTTCCGTGTAGCGAATTAGCTAACACATTTAGCAGTGGCAATATAGAACAGCGCTG                                                                 ]




>consensus_9039#0
CATCTCTTTCGTCTCATTTATTATTAGCTCCCGCACAAATGCATCCCACTATTTAACGTT
GCACTCGTTCTTTCACTCACCGATCTATCCCACCATCATCGACACCAGTGCATGAGATGT
CGGTGATGCAAAACAGTTTAAGAAACGGGATCACCCTAAACGGAACGAACTAACATATTA
AAAATAATCGCTTGTCAATACACTAACGGGTACAGCTGCAGCCATTCGTTATGTTTTAGT
GCCCGGACGATTGCCTTCGCCCACCGTTGTCGGTCGTTCATGCGTTGGCCCTCGTGTGTT
TCCAAGGTGTGGCGAAAAATTGATGTAGTAAAATTGGTAGATAGATAGATACAGAGAGAG
CACTTTTGTCGTTATGCACATCCCATCCCGCAGTACACTCTCCATTGTTCTGGCTTGCTA
TACATTAGAAAGGTGAGAGGGGCCTGTGTTGGAATAGGAATGCTTGTGATGATATCGCTA
ATCGTTGGAGCAAATCGTCTTTCGACGTCGATTGCACATCTAATGCCCTTCAAACAACCG
ACGGCTCCCGATCAGTGCACATCAGCGCCGATCAGTGCGGATCATCGTGCAAAGGGGGAA
TAGCGCTGACCGCGTTGGCGATATTTTGGATACGATAAAAAGGTTCACTACTTTTAAATA
TATTCAACATGTTCATGTTCGTCCCGCTGACGCTGAGCACAGAAAATCTTCTCGAGCGTA
TCGTTGTCTAGTTCGTAGACGTTCTCTACAGGAATAATGTGTCTCTATGGGGCAGTCGAA
GAAGTCGTACCTGAAATATGTGTTCGTTTTGCGTATACGTGTCCTTGTGTCTGGCGTGTC
TGTCCTGTCGCGGTCCTACCGATGAGGGGAAGTCCTGGATTGCATACCGCAAGGGTACGC
TGTCCCGCCCCGCACTGTATCGTCGATTGGAAGTTTTGTTTTATCTTTAAGTTTCCATAC
GATTGATGCACGCTAATGCTGCGTTTCCTGCTTATTCGCCGGAGGACACGTTGGGTACGC
ATGGGCGACACCTTCCTACATGAAAAACTCCTCCGTTGAATGGGACAGCGGCAGTCACGT
ACGCCCCGGCCGGTCCAGTATGGAAATTTCTATTACGCGCAGCCCGCGATACACTGGGTC
CGTGATCTGTAGTCCCTTTGGATTGTACACCCGCTCGTTCTGCATCGCAATATATTTCGA
CACCTTCCGGAGACACTTTTCGTAGTGCGTTTCCGTGCAAATGTAGATCAAGTACGCCGT
GATACAGGCCAGACAGCCCTCGCAGTACGTGCTGCAGGAGCCTTTCTCCGCCTCCGCGAA
ATATTCGTTCAGTTTGTTCATGGTGCTCTCGAAAGTGTGTCTATCGATCCTACTCTCCAA
CTCCGGGGGGAAACGGTTCTGGAACTTTACCGACGTGCCTTCGCTGTAATCCCGCTGGAT
GAATACTTTCATGTAGTTTGGCTGGGTGGTGGCCGGTGTGCCCGGCTGGGACATTCGTAC
ATTGGCCATAGCGGATGCTAGCTCGCGGGTTAGTTGCTAGTGCCCCCGTTTTGTTGTTTT
TGCTGAACGCTCTCCCTTTGTGTCGTTTACATGAACGTACGCAAAATGCAGCACACAATC
TTGCACAGTCACCACTCGACGTAGATTTCCGTGTAGCGAATTAGCTAACACATTTAGCAG
TGGCAATATAGAACAGCGCTGAGCCGTACGGTCGAGGAAAAATTGCAAAAAGTATCAAAT
TTCTGCCACCGAAATCGGTCCGCGG

consensusID : consensus_9039#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 639
fasta sequence

                              [GGTCCGTGATCTGTAGTCCCTTTGGATTGTACACCCGCTCGTTCTGCATCGCAATATATTTCGACACCTTCCGGAGACACTTTTCGTAGTGCGTTTCCGTGCAAATGTAGATCAAGTACGCCGTGATACAGGCCAGACAGCCCTCGCAGTACGTGCTGCAGGAGCCTTTCTCCGCCTCCGCGAAATATTCGTTCAGTTTGTTCATGGTGCTCTCGAAAGTGTGTCTATCGATCCTACTCTCCAACTCCGGGGGGAAACGGTTCTGGAACTTTACCGACGTGCCTTCGCTGTAATCCCGCTGGATGAATACTTTCATGTAGTTTGGCTGGGTGGTGGCCGGTGTGCCCGGCTGGGACATTCGTACATTGGCCATAGCGGATGCTAGCTCGCGGGTTAGTTGCTAGTGCCCCCGTTTTGTTGTTTTTGCTGAACGCTCTCCCTTTGTGTCGTTTACATGAACGTACGCAAAATGCAGCACACAATCTTGCACAGTCACCACTCGACGTAGATTTCCGTGTAGCGAATTAGCTAACACATTTAGCAGTGGCAATATAGAACAGCGCTGAGCCGTACGGTCGAGGAAAAATTGCAAAAAGTATCAAATTTCTGCCACCGAAATGATAATGTTTTCGATTTCGG]

[-] EMBL BM612964             [GGTCCGTGATCTGTAGTCCCTTTGGATTGTACACCCGCTCGTTCTGCATCGCAATATATTTCGACACCTTCCGGAGACACTTTTCGTAGTGCGTTTCCGTGCAAATGTAGATCAAGTACGCCGTGATACAGGCCAGACAGCCCTCGCAGTACGTGCTGCAGGAGCCTTTCTCCGCCTCCGCGAAATATTCGTTCAGTTTGTTCATGGTGCTCTCGAAAGTGTGTCTATCGATCCTACTCTCCAACTCCGGGGGGAAACGGTTCTGGAACTTTACCGACGTGCCTTCGCTGTAATCCCGCTGGATGAATACTTTCATGTAGTTTGGCTGGGTGGTGGCCGGTGTGCCCGGCTGGGACATTCGTACATTGGCCATAGCGGATGCTAGCTCGCGGGTTAGTTGCTAGTGCCCCCGTTTTGTTGTTTTTGCTGAACGCTCTCCCTTTGTGTCGTTTACATGAACGTACGCAAAATGCAGCACACAATCTTGCACAGTCACCACTCGACGTAGATTTCCGTGTAGCGAATTAGCTAACACATTTAGCAGTGGCAATATAGAACAGCGCTGAGCCGTACGGTCGAGGAAAAATTGCAAAAAGTATCAAATTTCTGCCACCGAAATGATAATGTTTTCGATTTCGG]
[-] EMBL BM580867             [                                          TCTGCATCGCAATATATTTCGACACCTTCCGGAGACACTTTTCGTAGTGCGTTTCCGTGCAAATGTAGATCAAGTACGCCGTGATACAGGCCAGACAGCCCTCGCAGTACGTGCTGCAGGAGCCTTTCTCCGCCTCCGCGAAATATTCGTTCAGTTTGTTCATGGTGCTCTCGAAAGTGTGTCTATCGATCCTACTCTCCAACTCCGGGGGGAAACGGTTCTGGAACTTTACCGACGTGCCTTCGCTGTAATCCCGCTGGATGAATACTTTCATGTAGTTTGGCTGGGTGGTGGCCGGTGTGCCCGGCTGGGACATTCGTACATTGGCCATAGCGGATGCTAGCTCGCGGGTTAGTTGCTAGTGCCCCCGTTTTGTTGTTTTTGCTGAACGCTCTCCCTTTGTGTCGTTTACATGAACGTACGCAAAATGCAGCACACAATCTTGCACAGTCACCACTCGACGTAGATTTCCGTGTAGCGAATTAGCTAACACATTTAGCAGTGGCAATATAGAACAGCGCTGAGCCGTACGGTCGAGGAAAAATTGCAAAAAGTATCAAATTTCgg                              ]




>consensus_9039#1
GGTCCGTGATCTGTAGTCCCTTTGGATTGTACACCCGCTCGTTCTGCATCGCAATATATT
TCGACACCTTCCGGAGACACTTTTCGTAGTGCGTTTCCGTGCAAATGTAGATCAAGTACG
CCGTGATACAGGCCAGACAGCCCTCGCAGTACGTGCTGCAGGAGCCTTTCTCCGCCTCCG
CGAAATATTCGTTCAGTTTGTTCATGGTGCTCTCGAAAGTGTGTCTATCGATCCTACTCT
CCAACTCCGGGGGGAAACGGTTCTGGAACTTTACCGACGTGCCTTCGCTGTAATCCCGCT
GGATGAATACTTTCATGTAGTTTGGCTGGGTGGTGGCCGGTGTGCCCGGCTGGGACATTC
GTACATTGGCCATAGCGGATGCTAGCTCGCGGGTTAGTTGCTAGTGCCCCCGTTTTGTTG
TTTTTGCTGAACGCTCTCCCTTTGTGTCGTTTACATGAACGTACGCAAAATGCAGCACAC
AATCTTGCACAGTCACCACTCGACGTAGATTTCCGTGTAGCGAATTAGCTAACACATTTA
GCAGTGGCAATATAGAACAGCGCTGAGCCGTACGGTCGAGGAAAAATTGCAAAAAGTATC
AAATTTCTGCCACCGAAATGATAATGTTTTCGATTTCGG

consensusID : consensus_9039#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 521
fasta sequence

                              [TGATACAGGCCAGACAGCCCTCGCAGTACGTGTTGCAGGAGCCTTTCTCCGCCTCCGCGAAATATTCGTTCAGTTTGTTCATGGTGCTCTCGAAAGTGTGTCTATCGATCCTACTCTCCAACTCCGGGGGGAAACGGTTCTGGAACTTTACCGACGTGCCTTCGCTGTAATCCCGCTGGATGAATACTTTCATGTAGTTTGGCTGGGTGGTGGCCGGTGTGCCCGGCTGGGACATTCGTACATTGGCCATAGCGGATGCTAGCTCGCGGGTTAGTTGCTAGTGCCCCCGTTTTGTTGTTTTTGCTGAACGCTCTCCCTTTG-TGTCGTTTACATGAACGTACGCAAAATGCAGCACACAATCTTGCACAGTCACCACTCGACGTAGATTTCCGTGTAGCGAATTAGCTAACACATTTAGCAGTGGCAATATAGAACAGCGTTGAGCCGTACGGTCGAGGAAAAATTGCAAAAAGTATCAAATTTCTGCCACCGAAATGATAATGTTTCGGACGCGTGGGCGG]

[-] EMBL BM610514             [TGATACAGGCCAGACAGCCCTCGCAGTACGTGTTGCAGGAGCCTTTCTCCGCCTCCGCGAAATATTCGTTCAGTTTGTTCATGGTGCTCTCGAAAGTGTGTCTATCGATCCTACTCTCCAACTCCGGGGGGAAACGGTTCTGGAACTTTACCGACGTGCCTTCGCTGTAATCCCGCTGGATGAATACTTTCATGTAGTTTGGCTGGGTGGTGGCCGGTGTGCCCGGCTGGGACATTCGTACATTGGCCATAGCGGATGCTAGCTCGCGGGTTAGTTGCTAGTGCCCCCGTTTTGTTGTTTTTGCTGAACGCTCTCCCTTTG TGTCGTTTACATGAACGTACGCAAAATGCAGCACACAATCTTGCACAGTCACCACTCGACGTAGATTTCCGTGTAGCGAATTAGCTAACACATTTAGCAGTGGCAATATAGAACAGCGTTGAGCCGTACGGTCGAGGAAAAATTGCAAAAAGTATCAAATTTCTGCCACCGAAATGATAATGTTTCGGACGCGTGGGCGG]
[-] EMBL BX625240             [                                                                                                                                                                                                                                                       CATAGCGGATGCTAGCTCGCGGGTTAGTTGCTAGTGCCCCCGTTGTGTTGTTTNTGCNGAACGCTCTCCCTTTGCTGTCGTNAACATGAACGTANGCAAAATGCAGCACACAATCTTGCACAGTCACCACTCGNCGTAGATTTCCGTGTAGCGAAATAGNTAACACATTTAGCAGTGGCAA                                                                                              ]




>consensus_9039#2
TGATACAGGCCAGACAGCCCTCGCAGTACGTGTTGCAGGAGCCTTTCTCCGCCTCCGCGA
AATATTCGTTCAGTTTGTTCATGGTGCTCTCGAAAGTGTGTCTATCGATCCTACTCTCCA
ACTCCGGGGGGAAACGGTTCTGGAACTTTACCGACGTGCCTTCGCTGTAATCCCGCTGGA
TGAATACTTTCATGTAGTTTGGCTGGGTGGTGGCCGGTGTGCCCGGCTGGGACATTCGTA
CATTGGCCATAGCGGATGCTAGCTCGCGGGTTAGTTGCTAGTGCCCCCGTTTTGTTGTTT
TTGCTGAACGCTCTCCCTTTGTGTCGTTTACATGAACGTACGCAAAATGCAGCACACAAT
CTTGCACAGTCACCACTCGACGTAGATTTCCGTGTAGCGAATTAGCTAACACATTTAGCA
GTGGCAATATAGAACAGCGTTGAGCCGTACGGTCGAGGAAAAATTGCAAAAAGTATCAAA
TTTCTGCCACCGAAATGATAATGTTTCGGACGCGTGGGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9039#1      ------------------------------------------------------------
consensus_9039#2      ------------------------------------------------------------
consensus_9039#0      CATCTCTTTCGTCTCATTTATTATTAGCTCCCGCACAAATGCATCCCACTATTTAACGTT 60
                                                                                  

consensus_9039#1      ------------------------------------------------------------
consensus_9039#2      ------------------------------------------------------------
consensus_9039#0      GCACTCGTTCTTTCACTCACCGATCTATCCCACCATCATCGACACCAGTGCATGAGATGT 120
                                                                                  

consensus_9039#1      ------------------------------------------------------------
consensus_9039#2      ------------------------------------------------------------
consensus_9039#0      CGGTGATGCAAAACAGTTTAAGAAACGGGATCACCCTAAACGGAACGAACTAACATATTA 180
                                                                                  

consensus_9039#1      ------------------------------------------------------------
consensus_9039#2      ------------------------------------------------------------
consensus_9039#0      AAAATAATCGCTTGTCAATACACTAACGGGTACAGCTGCAGCCATTCGTTATGTTTTAGT 240
                                                                                  

consensus_9039#1      ------------------------------------------------------------
consensus_9039#2      ------------------------------------------------------------
consensus_9039#0      GCCCGGACGATTGCCTTCGCCCACCGTTGTCGGTCGTTCATGCGTTGGCCCTCGTGTGTT 300
                                                                                  

consensus_9039#1      ------------------------------------------------------------
consensus_9039#2      ------------------------------------------------------------
consensus_9039#0      TCCAAGGTGTGGCGAAAAATTGATGTAGTAAAATTGGTAGATAGATAGATACAGAGAGAG 360
                                                                                  

consensus_9039#1      ------------------------------------------------------------
consensus_9039#2      ------------------------------------------------------------
consensus_9039#0      CACTTTTGTCGTTATGCACATCCCATCCCGCAGTACACTCTCCATTGTTCTGGCTTGCTA 420
                                                                                  

consensus_9039#1      ------------------------------------------------------------
consensus_9039#2      ------------------------------------------------------------
consensus_9039#0      TACATTAGAAAGGTGAGAGGGGCCTGTGTTGGAATAGGAATGCTTGTGATGATATCGCTA 480
                                                                                  

consensus_9039#1      ------------------------------------------------------------
consensus_9039#2      ------------------------------------------------------------
consensus_9039#0      ATCGTTGGAGCAAATCGTCTTTCGACGTCGATTGCACATCTAATGCCCTTCAAACAACCG 540
                                                                                  

consensus_9039#1      ------------------------------------------------------------
consensus_9039#2      ------------------------------------------------------------
consensus_9039#0      ACGGCTCCCGATCAGTGCACATCAGCGCCGATCAGTGCGGATCATCGTGCAAAGGGGGAA 600
                                                                                  

consensus_9039#1      ------------------------------------------------------------
consensus_9039#2      ------------------------------------------------------------
consensus_9039#0      TAGCGCTGACCGCGTTGGCGATATTTTGGATACGATAAAAAGGTTCACTACTTTTAAATA 660
                                                                                  

consensus_9039#1      ------------------------------------------------------------
consensus_9039#2      ------------------------------------------------------------
consensus_9039#0      TATTCAACATGTTCATGTTCGTCCCGCTGACGCTGAGCACAGAAAATCTTCTCGAGCGTA 720
                                                                                  

consensus_9039#1      ------------------------------------------------------------
consensus_9039#2      ------------------------------------------------------------
consensus_9039#0      TCGTTGTCTAGTTCGTAGACGTTCTCTACAGGAATAATGTGTCTCTATGGGGCAGTCGAA 780
                                                                                  

consensus_9039#1      ------------------------------------------------------------
consensus_9039#2      ------------------------------------------------------------
consensus_9039#0      GAAGTCGTACCTGAAATATGTGTTCGTTTTGCGTATACGTGTCCTTGTGTCTGGCGTGTC 840
                                                                                  

consensus_9039#1      ------------------------------------------------------------
consensus_9039#2      ------------------------------------------------------------
consensus_9039#0      TGTCCTGTCGCGGTCCTACCGATGAGGGGAAGTCCTGGATTGCATACCGCAAGGGTACGC 900
                                                                                  

consensus_9039#1      ------------------------------------------------------------
consensus_9039#2      ------------------------------------------------------------
consensus_9039#0      TGTCCCGCCCCGCACTGTATCGTCGATTGGAAGTTTTGTTTTATCTTTAAGTTTCCATAC 960
                                                                                  

consensus_9039#1      ------------------------------------------------------------
consensus_9039#2      ------------------------------------------------------------
consensus_9039#0      GATTGATGCACGCTAATGCTGCGTTTCCTGCTTATTCGCCGGAGGACACGTTGGGTACGC 1020
                                                                                  

consensus_9039#1      ------------------------------------------------------------
consensus_9039#2      ------------------------------------------------------------
consensus_9039#0      ATGGGCGACACCTTCCTACATGAAAAACTCCTCCGTTGAATGGGACAGCGGCAGTCACGT 1080
                                                                                  

consensus_9039#1      --------------------------------------------------------GGTC 4
consensus_9039#2      ------------------------------------------------------------
consensus_9039#0      ACGCCCCGGCCGGTCCAGTATGGAAATTTCTATTACGCGCAGCCCGCGATACACTGGGTC 1140
                                                                                  

consensus_9039#1      CGTGATCTGTAGTCCCTTTGGATTGTACACCCGCTCGTTCTGCATCGCAATATATTTCGA 64
consensus_9039#2      ------------------------------------------------------------
consensus_9039#0      CGTGATCTGTAGTCCCTTTGGATTGTACACCCGCTCGTTCTGCATCGCAATATATTTCGA 1200
                                                                                  

consensus_9039#1      CACCTTCCGGAGACACTTTTCGTAGTGCGTTTCCGTGCAAATGTAGATCAAGTACGCCGT 124
consensus_9039#2      -----------------------------------------------------------T 1
consensus_9039#0      CACCTTCCGGAGACACTTTTCGTAGTGCGTTTCCGTGCAAATGTAGATCAAGTACGCCGT 1260
                                                                                 *

consensus_9039#1      GATACAGGCCAGACAGCCCTCGCAGTACGTGCTGCAGGAGCCTTTCTCCGCCTCCGCGAA 184
consensus_9039#2      GATACAGGCCAGACAGCCCTCGCAGTACGTGTTGCAGGAGCCTTTCTCCGCCTCCGCGAA 61
consensus_9039#0      GATACAGGCCAGACAGCCCTCGCAGTACGTGCTGCAGGAGCCTTTCTCCGCCTCCGCGAA 1320
                      ******************************* ****************************

consensus_9039#1      ATATTCGTTCAGTTTGTTCATGGTGCTCTCGAAAGTGTGTCTATCGATCCTACTCTCCAA 244
consensus_9039#2      ATATTCGTTCAGTTTGTTCATGGTGCTCTCGAAAGTGTGTCTATCGATCCTACTCTCCAA 121
consensus_9039#0      ATATTCGTTCAGTTTGTTCATGGTGCTCTCGAAAGTGTGTCTATCGATCCTACTCTCCAA 1380
                      ************************************************************

consensus_9039#1      CTCCGGGGGGAAACGGTTCTGGAACTTTACCGACGTGCCTTCGCTGTAATCCCGCTGGAT 304
consensus_9039#2      CTCCGGGGGGAAACGGTTCTGGAACTTTACCGACGTGCCTTCGCTGTAATCCCGCTGGAT 181
consensus_9039#0      CTCCGGGGGGAAACGGTTCTGGAACTTTACCGACGTGCCTTCGCTGTAATCCCGCTGGAT 1440
                      ************************************************************

consensus_9039#1      GAATACTTTCATGTAGTTTGGCTGGGTGGTGGCCGGTGTGCCCGGCTGGGACATTCGTAC 364
consensus_9039#2      GAATACTTTCATGTAGTTTGGCTGGGTGGTGGCCGGTGTGCCCGGCTGGGACATTCGTAC 241
consensus_9039#0      GAATACTTTCATGTAGTTTGGCTGGGTGGTGGCCGGTGTGCCCGGCTGGGACATTCGTAC 1500
                      ************************************************************

consensus_9039#1      ATTGGCCATAGCGGATGCTAGCTCGCGGGTTAGTTGCTAGTGCCCCCGTTTTGTTGTTTT 424
consensus_9039#2      ATTGGCCATAGCGGATGCTAGCTCGCGGGTTAGTTGCTAGTGCCCCCGTTTTGTTGTTTT 301
consensus_9039#0      ATTGGCCATAGCGGATGCTAGCTCGCGGGTTAGTTGCTAGTGCCCCCGTTTTGTTGTTTT 1560
                      ************************************************************

consensus_9039#1      TGCTGAACGCTCTCCCTTTGTGTCGTTTACATGAACGTACGCAAAATGCAGCACACAATC 484
consensus_9039#2      TGCTGAACGCTCTCCCTTTGTGTCGTTTACATGAACGTACGCAAAATGCAGCACACAATC 361
consensus_9039#0      TGCTGAACGCTCTCCCTTTGTGTCGTTTACATGAACGTACGCAAAATGCAGCACACAATC 1620
                      ************************************************************

consensus_9039#1      TTGCACAGTCACCACTCGACGTAGATTTCCGTGTAGCGAATTAGCTAACACATTTAGCAG 544
consensus_9039#2      TTGCACAGTCACCACTCGACGTAGATTTCCGTGTAGCGAATTAGCTAACACATTTAGCAG 421
consensus_9039#0      TTGCACAGTCACCACTCGACGTAGATTTCCGTGTAGCGAATTAGCTAACACATTTAGCAG 1680
                      ************************************************************

consensus_9039#1      TGGCAATATAGAACAGCGCTGAGCCGTACGGTCGAGGAAAAATTGCAAAAAGTATCAAAT 604
consensus_9039#2      TGGCAATATAGAACAGCGTTGAGCCGTACGGTCGAGGAAAAATTGCAAAAAGTATCAAAT 481
consensus_9039#0      TGGCAATATAGAACAGCGCTGAGCCGTACGGTCGAGGAAAAATTGCAAAAAGTATCAAAT 1740
                      ****************** *****************************************

consensus_9039#1      TTCTGCCACCGAAATGATAATGTTTTCGATTTCGG----- 639
consensus_9039#2      TTCTGCCACCGAAATGATAATGTTTCGGACGCGTGGGCGG 521
consensus_9039#0      TTCTGCCACCGAAATCGGTCCGCGG--------------- 1765
                      ***************      *