cluster # 913

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Anopheles gambiae
cluster # 913 cluster # 913 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_913#0 length = 625 sequences # 1

consensus_913#1 length = 234 sequences # 1

consensusID : consensus_913#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence

                              [CCGCCCACGCGTCCGGTTTGCGCGTACCGTCGCTCGTCCCGTGTTTCCCCGTTCACCTTCGCGCACACGTGCAGAACGTACGGGATTTGATTGGCGACAATTTTTTGCAAACCAATTTGTTCGGGACGGAAGAAATAAAGCCGCAGCTGCGTTTGGTTTTGTTTTTAAATTATTTCTGGTCTGCTGCAGCACTGCAAGATAAAGGGGGAAATTTGCGGCATATACAAAAAAAAACGCAACAACTCAAAAGAGCATTCCCTTTACGAAAAGAGCACCCAGTGCCCTTCGCCCAAACGAGTGGTCATCAACACATCGTTCGTCCCTTTCTGCTGCTAAAGAAATCCGCGGAGCAAAAACCATTCTCCATGAAACGAATGAGCAGCGCGTGTTAAAGTTTTTGAACCTGCTGTACTCGAACAGGCGGGTTTTTTTTTCCTTCTTCGGTGGTACCATGGGTCATCGAAGAAAGCGTAATAATATGTGTGAACGTGTCGTTGCCCGCTGGACTGTAAACGCGCCCCCTGCAACAGTTTGAACTCGCAAATTCGCAACCGGAACATCGTTCGCACAGCAGACTTGGCGAGCGCGCGCGCGATCGCAAACACGCCCCTGGCTCCAAGGGACA]

[+] EMBL BM630467             [CCGCCCACGCGTCCGGTTTGCGCGTACCGTCGCTCGTCCCGTGTTTCCCCGTTCACCTTCGCGCACACGTGCAGAACGTACGGGATTTGATTGGCGACAATTTTTTGCAAACCAATTTGTTCGGGACGGAAGAAATAAAGCCGCAGCTGCGTTTGGTTTTGTTTTTAAATTATTTCTGGTCTGCTGCAGCACTGCAAGATAAAGGGGGAAATTTGCGGCATATACAAAAAAAAACGCAACAACTCAAAAGAGCATTCCCTTTACGAAAAGAGCACCCAGTGCCCTTCGCCCAAACGAGTGGTCATCAACACATCGTTCGTCCCTTTCTGCTGCTAAAGAAATCCGCGGAGCAAAAACCATTCTCCATGAAACGAATGAGCAGCGCGTGTTAAAGTTTTTGAACCTGCTGTACTCGAACAGGCGGGTTTTTTTTTCCTTCTTCGGTGGTACCATGGGTCATCGAAGAAAGCGTAATAATATGTGTGAACGTGTCGTTGCCCGCTGGACTGTAAACGCGCCCCCTGCAACAGTTTGAACTCGCAAATTCGCAACCGGAACATCGTTCGCACAGCAGACTTGGCGAGCGCGCGCGCGATCGCAAACACGCCCCTGGCTCCAAGGGACA]




>consensus_913#0
CCGCCCACGCGTCCGGTTTGCGCGTACCGTCGCTCGTCCCGTGTTTCCCCGTTCACCTTC
GCGCACACGTGCAGAACGTACGGGATTTGATTGGCGACAATTTTTTGCAAACCAATTTGT
TCGGGACGGAAGAAATAAAGCCGCAGCTGCGTTTGGTTTTGTTTTTAAATTATTTCTGGT
CTGCTGCAGCACTGCAAGATAAAGGGGGAAATTTGCGGCATATACAAAAAAAAACGCAAC
AACTCAAAAGAGCATTCCCTTTACGAAAAGAGCACCCAGTGCCCTTCGCCCAAACGAGTG
GTCATCAACACATCGTTCGTCCCTTTCTGCTGCTAAAGAAATCCGCGGAGCAAAAACCAT
TCTCCATGAAACGAATGAGCAGCGCGTGTTAAAGTTTTTGAACCTGCTGTACTCGAACAG
GCGGGTTTTTTTTTCCTTCTTCGGTGGTACCATGGGTCATCGAAGAAAGCGTAATAATAT
GTGTGAACGTGTCGTTGCCCGCTGGACTGTAAACGCGCCCCCTGCAACAGTTTGAACTCG
CAAATTCGCAACCGGAACATCGTTCGCACAGCAGACTTGGCGAGCGCGCGCGCGATCGCA
AACACGCCCCTGGCTCCAAGGGACA

consensusID : consensus_913#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 234
fasta sequence

                              [ATAGGTCGTCGTGCAGTGCCCAAAAGGTGTCACCAGTGCGGGTTGGTCGCTTCCCACCTCTTACAGCATTTTTGGCAAACACGATTTGATTGGCGACAAATTTTTGTAAACCAATTTGTTCGGGACGGAAGAAATAAAGCCGCAGCTGCGTTTGGTTTTTTTTTTTTAATTATTTCTGGTCTGCTGCAGCACTGCAAGATAAAGGGGGAAATTTGCGGCATATACAAAAAAACG]

[+] EMBL AGA281859            [ATAGGTCGTCGTGCAGTGCCCAAAAGGTGTCACCAGTGCGGGTTGGTCGCTTCCCACCTCTTACAGCATTTTTGGCAAACACGATTTGATTGGCGACAAATTTTTGTAAACCAATTTGTTCGGGACGGAAGAAATAAAGCCGCAGCTGCGTTTGGTTTTTTTTTTTTAATTATTTCTGGTCTGCTGCAGCACTGCAAGATAAAGGGGGAAATTTGCGGCATATACAAAAAAACG]




>consensus_913#1
ATAGGTCGTCGTGCAGTGCCCAAAAGGTGTCACCAGTGCGGGTTGGTCGCTTCCCACCTC
TTACAGCATTTTTGGCAAACACGATTTGATTGGCGACAAATTTTTGTAAACCAATTTGTT
CGGGACGGAAGAAATAAAGCCGCAGCTGCGTTTGGTTTTTTTTTTTTAATTATTTCTGGT
CTGCTGCAGCACTGCAAGATAAAGGGGGAAATTTGCGGCATATACAAAAAAACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_913#0      -CCGCCCACGCGTCCGGTTTGCGCGTACCGTCGCTCGTCCCGTGTTTCCCCGTTCACCTT 59
consensus_913#1      ATAGGTCGT-CGTGCAGTGCCCAAAAGGTGTCACCAGTGCGGGTTGGTCGCTTCCCACCT 59
                        *  *   *** * **   *       *** *  ** * *  *   * * * *  * *

consensus_913#0      CGCGCACACGTGCAGAACGTACGGGATTTGATTGGCGACAATTTTTTGCAAACCAATTTG 119
consensus_913#1      CTTACA-GCATTTTTGGCAAACACGATTTGATTGGCGACAAATTTTTGTAAACCAATTTG 118
                     *   **  * *      *  **  ***************** ****** ***********

consensus_913#0      TTCGGGACGGAAGAAATAAAGCCGCAGCTGCGTTTGGTTTTGTTTTTA-AATTATTTCTG 178
consensus_913#1      TTCGGGACGGAAGAAATAAAGCCGCAGCTGCGTTTGGTTTTTTTTTTTTAATTATTTCTG 178
                     ***************************************** *****  ***********

consensus_913#0      GTCTGCTGCAGCACTGCAAGATAAAGGGGGAAATTTGCGGCATATACAAAAAAAAACGCA 238
consensus_913#1      GTCTGCTGCAGCACTGCAAGATAAAGGGGGAAATTTGCGGCATATACAAAAAAACG---- 234
                     ******************************************************      

consensus_913#0      ACAACTCAAAAGAGCATTCCCTTTACGAAAAGAGCACCCAGTGCCCTTCGCCCAAACGAG 298
consensus_913#1      ------------------------------------------------------------
                                                                                 

consensus_913#0      TGGTCATCAACACATCGTTCGTCCCTTTCTGCTGCTAAAGAAATCCGCGGAGCAAAAACC 358
consensus_913#1      ------------------------------------------------------------
                                                                                 

consensus_913#0      ATTCTCCATGAAACGAATGAGCAGCGCGTGTTAAAGTTTTTGAACCTGCTGTACTCGAAC 418
consensus_913#1      ------------------------------------------------------------
                                                                                 

consensus_913#0      AGGCGGGTTTTTTTTTCCTTCTTCGGTGGTACCATGGGTCATCGAAGAAAGCGTAATAAT 478
consensus_913#1      ------------------------------------------------------------
                                                                                 

consensus_913#0      ATGTGTGAACGTGTCGTTGCCCGCTGGACTGTAAACGCGCCCCCTGCAACAGTTTGAACT 538
consensus_913#1      ------------------------------------------------------------
                                                                                 

consensus_913#0      CGCAAATTCGCAACCGGAACATCGTTCGCACAGCAGACTTGGCGAGCGCGCGCGCGATCG 598
consensus_913#1      ------------------------------------------------------------
                                                                                 

consensus_913#0      CAAACACGCCCCTGGCTCCAAGGGACA 625
consensus_913#1      ---------------------------