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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9231#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1382 fasta sequence
[ACCCTGTTTCTCTTGCTGTGAGCGTCAGTAAATTAAAAAAAAAAAAACAAACCTATGGATCACAGCAGAGTGTGGTGCTGTCTGCTTAGCTTCATCGCAATGGCCGTGCTGTGTAGCGCATCCAGTGCAGCATGCACGCTCCAGGTCCCCGAAACCATGATAACGCGCCTGCTGCAAGCGGATCAGCCCGCCGGCGGCTGCGCA-CTGC-TTGGGATAGTCTACTGTCTCGGCTGGAGCAAATGCGCCACAATCTTACGGGCTGCAGCGAGCGCGAAACGACGAACCCGGCACCACCCGATGATACCCGCACCAACGCCCCCTGTCAGCTGCTGCTGGACGAGCTGCAACGGAAAGGGAATCAAACCCTGCTCCAGCTCGACAAAGAAATGGCCAGCAAAGCACTGTACGAGCGCATCGAGCTGGCCAAGGTGGCGCAGGACCAGGACCGCATCCAACAAGCGATCGAAACGATGCGCACCGAGCAGCGAAACCACCGGCAGCAGCTGCTACTCCTCTACCTCGATGCGGCGGACCTACGACGAGCCCTGCACCAGTATCAGCTGCTCGCCGCGCAGGGCGATCGCCACCTTCCCCAGCAGATAGTGAAGTTCGTGTACGCCGCCCCA-CGGCACGAGAACCGCCGGCTCGAGAACCTGCTCGACCTGGTGCGGCAGCTGCCGGCGCGCCAGGACCAGCGCACCCTGTACCAGCTGCTGCAGCCGGAAATTATGAAGCGCCCCACGCAGAACCAGAGCACCCTCGCCATGCTGACAGCGCTCGAGATGGGCCAGGTCGTGGAGGGGAACGGCGAGCTGAAAAAGCAGCAGGACGCGATGTACCAGCTGGTGCTGAAGCGCTGGATGTTTCTGTGCCTCGCCGGCCAGTATCGCGAGATAGTGCAGTTTGCCACGAAGCACCCGCGCCTGTTCGAGCAGATCGGGGCGAAGATCGCCACGATTCATCCGAAGTACTGGTGGAAGTTTAGCTTCACCCAGTTCGTGACGTACCCGA-ACCTGTTGCCGCTGCCCGAGCAGCGGCTGGAAGCGTTCCGCACCATCATGAAGCAGCTGAAGCAGCGCAATGGGAAGTTTTTCGCCGACCATCTGGCGAAGCTGGCGCCCCAGATCGAGCGCTGCGAGCAGTTTCTGCGGCAGCAGAAGAAGGAGCTGGAGTGGAAGGACGAGCTGGTGAAGCTGAAGGGACAGTTTGCCGACTTTGACCGGCGCAAGGACTACGCGTACTTTCTGAAAAACTCCAAGGCGCTCATTAAGAAGTATGCAGACGCTGCGAAGCAAAACAAAAACC-GACAGCCCGGGCGCCGCGGAGGTCTTGCCGGGCGCCGCTAATGAGGCTAATAATGTCCAGTCGAAAAAAAAAAATTG]
[+] EMBL CNS095P7 [ACCCTGTTTCTCTTGCTGTGAGCGTCAGTAAATTAAAAAAAAAAAAACAAACCTATGGATCACAGCAGAGTGTGGTGCAGTCTGCTTAGCTTCATCGCAATGGCCGTGCTGTGTAGCGCATCCAGTGCAGCATGCA GCTCCAGGTCCCCGAAACCATGATAACGCGCCTGCTGCAAGCGGATCAGCCCGCCGGCGGCTGCGCA CTGC TTGGGATAGTCTACTGTCTCGGCTGGAGCAAATGCGCCACAATCTTACGGGCTGCAGCGAGCGCGAAACGACGAACCCGGCACCACCCGATGATACCCGCACCAACGCCCCCTGTCAGCTGCTGCTGGACGAGCTGCAACGGAAAGGGAATCAAACCCTGCTCCAGCTCGACAAAGAAATGGCCAGCAAAGCACTGTACGAGCGCATCGAGCTGGCCAAGGTGGCGCAGGACCAGGACCGCATCCAACAAGCGATCGAAACGATGCGCACCGAGCAGCGAAACCACCGGCAGCAGCTGCTACTCCTCTACCTCGATGCGGCGGACCTACGACGAGCCCTGCACCAGTATCAGCTGCTCGCCGCGCAGGGCGATCGCCACCTTCCCCAGCAGATAGTGAAGTTCGTGTACGCCGCCCCACCGGCACGAGAACCGCCGGCTCGAGAACCTGCTCGACCTGGTGCGGCA CTGCCGGCGCGCCAGGACCAGCGCACCCTGTACCAGCTGCTGCAGCCGGAAATTATGAAGCGCCCCACGCAGAACCAGAGCACCCTCGCCATGCTGACAGCGCTCGAGATGGGCCAGGTCGTGGAGGGGAACGGCGAGCTGAAAAAGCAGCAGGACGCGATGTACCAGCTGGTGCTGAAGCGCTGGATGTTTCTGTGCCTCGCCGGCCAGTATCGCGAGAAAGTGCAGTTTGCCACGAAGCACCCGCGCCTGTTCGAGCAGATCGGGGCGAAGATCGCCA ]
[+] EMBL AGA297932 [ TTCTCTTGCTGTGAGCGTCNGTAAATT TAAAAAAAAAACAAACCTATGGATCACAGCAGAGTGTGGTGCTGTTTGCTTAGCTTCATCGCAATGGCCGTGCTGTGTAGCGCATCCAGTGCAGCATGCACGCTCCAGGTCCCCGAAACCATGATAACGCGCCTGCTGCAAGCGGATCAGCCCGCCGGCGGCTGCGCAGCTGC TTGGGATAGTCTACTGTCTCGGCTGGAGCAAATGCGCCACAATCTTACGGGCTGCAGCGAGCGCGAAACGACGAACCCGGCACCACCCGATGATACCCGCACCAA ]
[+] EMBL BM608931 [ ccgCTTGCTGTGAGCGTCAGTTAATT AAAAAAACAAACCTATGGATCACAGCAGAGTGTGGTGCTGTCTGCTTAGCTTCATCGCAATGGCCGTGCTGTGTAGCGCATCCAGTGCAGCATGCACGCTCCAGGTCCCCGAAACCATGATAACGCGCCTGCTGCAAGCGGATCAGCCCGCCGGCGGCTGCGCAGCTGC TTGGGATAGTCTACTGTCTCGGCTGGAGCAAATGCGCCACAATCTTACGGGCTGCAGCGAGCGCGAAACGACGAACCCGGCACCACCCGATGATACCCGCACCAACGCCCCCTGTCAGCTGCTGCTGAACGAGCTGCAACGGAAAGGGAATCAAACCCTGCTCCAGCTCGACAAAGAAATGGCCAGCAAAGCACTGTACGAGCGCATCGAGCTGGCCAAGGTGGTGCAGGACCAGGACCGCATCCAACAAGCGATCGAAACGATGCGCACCGAGCAGCGAAACCACCGGCAGCAGCTGCTACTCCTCTACCTCGATGCGGCGGACCTACGACGAGCCCTGCACCAGTATAAGCTGCTC ]
[+] EMBL BM620238 [ ccgCTTGCTGTGAGCGTCAGTTAATT AAAAAAACAAACCTATGGATCACAGCAGAGTGTGGTGCTGTCTGCTTAGCTTCATCGCAATGGCCGTGCTGTGTAGCGCATCCAGTGCAGCATGCACGCTCCAGGTCCCCGAAACCATGATAACGCGCCTGCTGCAAGCGGATCAGCCCGCCGGCGGCTGCGCAGCTGC TTGGGATAGTCTACTGTCTCGGCTGGAGCAAATGCGCCACAATCTTACGGGCTGCAGCGAGCGCGAAACGACGAACCCGGCACCACCCGATGATACCCGCACCAACGCCCCCTGTCAGCTGCTGCTGAACGAGCTGCAACGGAAAGGGAATCAAACCCTGCTCCAGCTCGACAAAGAAATGGCCAGCAAAGCACTGTACGAGCGCATCGAGCTGGCCAAGGTGGTGCAGGACCAGGACCGCATCCAACAAGCGATCGAAACGATGCGCACCGAGCAGCGAAACCACCGGCAGCAGCTGCTACTCCTCTACCTCGATGCGGCGGACCTACGACGAGCCCTGCACCAGTATAAGCTGCTCGTCGCGCAGGGCGATCGCCACCTTCCCCAGCAGATAGTGAAGTTCGTGTACGCCGCCCCA CGGCACGAGAACCGCCGGCTCGAGAACCTGCTCGACCTGGTGCGGCAGCTGCCGGCGTGCCAGGAC ]
[+] EMBL CNS09EV0 [ TTGCTGTGAGCGTCAGTAAATTAAAAAAAAAAAAACAAACCTATGGATCACAGCAGAGTGTGGTGCTGTCTGCTTAGCTTCATCGCAATGGCCGTGCTGTGTAGCGCATCCAGTGCAGCATGCACGCTCCAGGTCCCCGAAACCATGATAACGCGCCTGCTGCAAGCGGATCAGCCCGCCGGCGGCTGCGCA CTGC TTGGGATAGTCTACTGTCTCGGCTGGAGCAAATGCGCCACAATCTTACGGGCTGCAGCGAGCGCGAAACGACGAACCCGGCACCACCCGATGATACCCGCACCAACGCCCCCTGTCAGCTGCTGCTGGACGAGCTGCAACGGAAAGGGAATCAAACCCTGCTCCAGCTCGACAAAGAAATGGCCAGCAAAGCACTGTACGAGCGCATCGAGCTGGCCAAGGTGGCGCAGGACCAGGACCGCATCCAACAAGCGATCGAAACGATGCGCACCGAGCAGCGAAACCACCGGCAGCAGCTGCTACTCCTCTACCTCGATGCGGCGGACCTACGACGAGCCCTGCACCAGTATCAGCTGCTCGCCGCGCAGGGCGATCGCCACCTTCCCCAGCAGATAGTGAAGTTCGTGTACGCCGCCCCA CGGCACGAGAACCGCCGGCTCGAGAACCTGCTCGACCTGGTGCGGCAGCTGCCGGCGCGCCAGGACCAGCGCACCCTGTACCAGCTGCTGCAGCCGGAAATTATGAAGCGCCCCACGCAGAACCAGAGCACCCTCGCCATGCTGACAGCGCTCGAGATGGGCCAGGTCGTGGAGGGGAACGGCGAGCTGAAAAAGCAGCAGGACGCGATGTACCAGCTGGTGCTGAAGCGCTGGATGTTTCTGTGCCTCGCCGGCCAGTATCGCGAGATAGTGCAGTTTGCCACGAAGCACCCGCGCCTGTTCGAGCAGATCGGGGCGAAGATCGCCACGATT ]
[+] EMBL CNS09ILH [ GCTGTGAGCGTCAGTAAATTAAAAAAAAAAAAACAAACCTATGGATCACAGCAGAGTGTGGTGCTGTCTGCTTAGCTTCATCGCAATGGCCGTGCTGTGTAGCGCATCCAGTGCAGCATGC CGCTCCAGGTCCCCGAAACCATGATAACGCGCCTGCTGCAAGCGGATCAGCCCGCCGGCGGCTGCGCA CTGCTTTGGGATAGTCTACTGTCTCGGCTGGAGCAAATGCGCCACAATCTTACGGGCTGCAGCGAGCGCGAAACGACGAACCCGGCACCACCCGATGATACCCGCACCAACGCCCCCTGTCAGCTGCTGCTGGACGAGCTGCAACGGAAAGGGAATCAAACCCTGCTCCAGCTCGACAAAGAAATGGCCAGCAAAGCACTGTACGAGCGCATCGAGCTGGCCAAGGTGGCGCAGGACCAGGACCGCATCCAACAAGCGATCGAAACGATGCGCACCGAGCAGCGAAACCACCGGCAGCAGCTGCTACTCCTCTACCTCGATGCGGCGGACCTACGACGAGCCCTGCACCAGTATCAGCTGCTCGCCGCGCAGGGCGATCGCCACCTTCCCCAGCAGATAGTGAAGTTCGTGTACGCCGCCCCA CGGCACGAGAACCGCCGGCTCGAGAACCTGCTCGACCTGGTGCGGCA CTGCCGGCGCGCCAGGACCAGCGCACCCTGTACCAGCTGCTGCAGCCGGAAATTATGAAGCGCCCCACGCAGAACCAGAGCACCCTCGCCATGCTGACAGCGCTCGAGATGGGCCAGGTCGTGGAGGGGAACGGCGAGCTGAAAAAGCAGCAGGACGCGATTTACCAGCTGGTGCTGAAGCGCTG ]
[+] EMBL CNS08TBX [ TGAGCGTCAGTAAATTAAAAAAAAAAAAACAAACCTATGGATCACAGCAGAGTGTGGTGCTGTCTGCTTAGCTTCATCGCAATGGCCGTGCTGTGTAGCGCATCCAGTGCAGCATGCA GCTCCAGGTCCCCGAAACCATGATAACGCGCCTGCTGCAAGCGGATCAGCCCGCCGGCGGCTGCGCA CTGC TTGGGATAGTCTACTGTCTCGGCTGGAGCAAATGCGCCACAATCTTACGGGCTGCAGCGAGCGCGAAACGACGAACCCGGCACCACCCGATGATACCCGCACCAACGCCCCCTGTCAGCTGCTGCTGGACGAGCTGCAACGGAAAGGGAATCAAACCCTGCTCCAGCTCGACAAAGAAATGGCCAGCAAAGCACTGTACGAGCGCATCGAGCTGGCCAAGGTGGCGCAGGACCAGGACCGCATCCAACAAGCGATCGAAACGATGCGCACCGAGCAGCGAAACCACCGGCAGCAGCTGCTACTCCTCTACCTCGATGCGGCGGACCTACGACGAGCCCTGCACCAGTATCAGCTGCTCGCCGCGCAGGGCGATCGCCACCTTCCCTTTTTGATAGTGAAGTTCGTGTACGCCGCCCCA CGGCACGAGAACCGCCGGCTCG ]
[+] EMBL CNS09L8Q [ TGCAACGGAAAGGGAATCAAACCCTGCTCCAGCTCGACAAAGAAATGGCCAGCAAAGCACTGTACGAGCGCATCGAGCTGGCCAAGGTGGCGCAGGACCAGGACCGCATCCAACAAGCGATCGAAACGATGCGCACCGAGCAGCGAAACCACCGGCAGCAGCTGCTACTCCTCTACCTCGATGC ]
[+] EMBL AF457555 [ GCGATCGAAACGATGCGCACCGAGCAGCGAAACCACCGGCAGCAGCTGCTACTCCTCTACCTCGATGCGGCGGACCTACGACGAGCCCTGCACCAGTATCAGCTGCTCGCCGCGCAGGGCGATCGCCACCTTCCCCAGCAGATAGTGAAGTTCGTGTACGCCGCCCCA CGGCACGAGAACCGCCGGCTCGAGAACCTGCTCGACCTGGTGCGGCAGCTGCCGGCGCGCCAGGACCAGCGCACCCTGTACCAGCTGCTGCAGCCGGAAATTATGAAGCGCCCCGCGCAGAACCAGAGCACCCTCGCCATGCTGACAGCGCTCGAGATGGGCCAGGTCGTGGAGGGGAACGGCGAGCTGAAAAAGCAGCAGGACGCGATGTACCAGCTGGTGCTGAAGCGCTGGATGTTTCTGTGCCTCGCCGGCCAGTATCGCGAGATAGTGCAGTTTGCCACGAAGCACCCGCGCCTGTTCGAGTAGATCGGGGCGAAGATCGCCACGATTCATCCGAAGTACTGGTGGAAGTTTAGCTTCACCCAGTTCGCGACGTACCCGA ACCTGTTGCCGCTGCCCGAGCAGCGGCTGGAAGCGTTCCGCACCATCATGAAGCAGCTGAAGCAGCGCAATGGGAAGTTTTTCGCCGACCATCTGGCGAAGCTGGCGCCCCAGATCGAGCGCTGCGAGCAGTTTCTGCGGCAGCAGAAGAAGGAGCTGGAGTGGAAGGACGAGCTGGTGAAGCTGAAGGGACAGTTTGCCGACTTTGACCGGCGCAAGGACTACGCGTACTATCTGAAAAACTCCAAGGCGCTCATTAAGAAGTATGCAGACGCTGCGAAGCAAAACAAAAACC GACAGCCCGGGCGCCGCGGAGGTCTTGCCGGGCGCCGCTAATGAGGCTAATAATGTCCAGTCGAAAAAAAAAAA ]
[-] EMBL CNS09EV1 [ ACCACCGGCAGCAGCTGCTACTCCTCTACCTCGATGCGGCGGACCTACGACGAGCCCTGCACCAGTTTCAGCTGCTCGCCGCGCAGGGCGATCGCCACCTTCCCCAGCAGATAGTGAAGTTCGTGTACGCCCCCCCA CGGCACGAGAACCGCCGGCTCGAGAACCTGCTCGACCTGGTGCGGCAGCTGCCGGCGCGCCAGGACCAGCGCACCCTGTACCAGCTGCTGCAGCCGGAAATTTTGAAGCGCCCCACGCAGAACCAGAGCACCCTCGCCATGCTGACAGCGCTCGAGATGGGCCAGGTCGTGGAGGGGAACGGCGAGCTGAAAAAGCAGCAGGACGCGATGTACCAGCTGGTGCTGAAGCGCTGGATGTTTTTGTGCCTCGCCGGCCAGTATCGCGAGATAGTGCAGTTTGCCACGAAGCACCCGCGCCTGTTCGAGCAGATCGGGGCGAAGATCGCCACGATTCATCCGAAGTACTGGTGGAAGTTTAGCTCCACCCAGTTCGTGACGTACCCGA ACCTGTTGCCGCTGCCCGAGCAGCGGCTGGAAGCGTTCCGCACCATCATGAAGCAGCTGAAGCAGCGCAATGGGAAGTTTTTCGCCGACCCTCTGGCGAAGCTGGCGCCCCAGATCGAGCGCTGCGAGCAGTTTCTGCGGCAGCAGAAGAAGGAGCTGGAGTGGAAGGACGAGCTGGTGAAGCTGAAGGGACAGTTTGCCGACTTTGACCGGCGCAAGGACTACGCGTACTTTCTGAAAAACTCCAAGGCGCTCATTAAGAAGTATGCAGACGCTGCGAAGCAAAACAAAAACC GACAGCCCGGGCGCCGCGGAGGTCTTGCCGGGCGCCGCTAATGAGGCTAATAATGTCCAGTCGAATAAATGCAATTG]
[-] EMBL CNS095P8 [ CTTCCCCAGCAGATAGTGAAGTTCGTGTACGCCGCCCCA CGGCACGAGAACCGCCGGCTCGAGAACCTGCTCGACCTGGTGCGGCAGCTGCCGGCGCGCCAGGACCAGCGCACCCTGTACCAGCTGCTGCAGCCGGAAATTTTGAAGCGCCCCACGCAGAACCAGAGCACCCTCGCCATGCTGACAGCGCTCGAGATGGGCCAGGTCGTGGAGGGGAACGGCGAGCTGAAAAAGCAGCAGGACGCGATGTACCAGCTGGTGCTGAAGCGCTGGATGTTTTTGTGCCTCGCCGGCCAGTATCGCGAGATAGTGCAGTTTGCCACGAAGCACCCGCGCCTTTTCGAGCAGATCGGGGCGAAGATCGCCACGATTCATCCGAAGTACTGGTGGAAGTTTAGCTTCACCCAGTTCGTGACGTACCCGAGACCTGTTGCCGCTGCCCGAGCAGCGGCTGGAAGCGTTCCGCACCATCATGAAGCAGCTGAAGCAGCGCAATGGGAAGTTTTTCGCCGACCTTCTGGCGAAGCTGGCGCCCCAGATCGAGCGCTGCGAGCAGTTTCTGCGGCAGCAGAAGAAGGAGCTGGAGTGGAAGGACGAGCTGGTGAAGCTGAAGGGACAGTTTGCCGACTTTGACCGGCGCAAGGACTACGCGTACTTTCTGAAAAACTCCAAGGCGCTCATTAAGAAGTATGCAGACGCTGCGAAGCAAAAAAAAAACCGGACAGCCCGGGCTCCGCGGAGGTTTTGCCGGGCGCCGCTAATGAGG ]
[-] EMBL CNS09ILI [ CCTGGTGCGGCAGCTGCCGGCGCGCCAGGACCAGCGCACCCTGTTCCAGCTGCTGCAGCCGGAAATTATGAAGCGCCCCACGCAGAACCAGAGCACCCTCGCCATGCTGACAGCGCTCGAGATGGGCCAGGTCGTGGAGGGGAACGGCGAGCTGAAAAAGCAGCAGGACGCGATGTACCAGCTGGTGCTGAAGCGCTGGATGTTTTTGTGCCTCGCCGGCCAGTATCGCGAGATAGTGCAGTTTGCCACGAAGCACCCGCGCCTGTTCGAGCAGATCGGGGCGAAGATCGCCACGATTCATCCGAAGTACTGGTGGAAGTTTAGCTTCACCCAGTTCGTGACGTACCCGA ACCTGTTG CGCTGCCCGAGCAGCGGCTGGAAGCGTTCCGCACCATCATGAAGCAGCTGAAGCAGCGCAATGGGAAGTTTTTCGCCGACCATCTGGC ]
consensusID : consensus_9231#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence
[GTTCGTGTACGCCGCCCCACGGCACGAGAACCGCCGGCTCGAGAACCTGCTCGACCTGGTGCGGCAGCTGCCGGCGCAAAAAGAACCAGCGCACCCTGTACCCAGCTGAAAAAGCAGCAGGACGCGATGTACCAGCTGGTGGTGAAGCGCTGGATGTTTCTGTGCCTCGCCGGCCAGTATCGCGAGATAGTGCAGTTTGCCACGAAGCACCCGCGCCTGTTCGAGCAGATCGGGGCGAAGATCGCCACGATTCATCCGAAGTACTGGTGGAAGTTTAGCTTCACCCAGTTCGTGACGTACCCGAACCTGTTGCGCTGCCCGAGCAGCGGCTGGAAGCGTTCCGCACCATCATGAAGCAGCTGAAGCAGCGCAATGGGAAGTTTTTCGCCGACCATCTGGCGAAGCTGGCGCCCCAGATCGAGCGCTGCGAGCAGTTTCTGCGGCAGCAGAAGAAGGAGCTGGAGTGGAAGGACGAGCTGGTGAAGCTGAAGGGACAGTTTGCCGACTTTGACCGGCGCAAGGACTACGCGTACTATCTGAAAAACTCCAAGGCGCTCATTAAGAAGTATGCAGACGCTGCGAAGCAAAACAAAAACCGACAGCCCGGGCGCCGCGGAGGCCTTGCCGGGCGCCGCTAATGAGGCTAATAATGTCCAGTCGAATAAATG]
[-] EMBL CNS08TBY [GTTCGTGTACGCCGCCCCACGGCACGAGAACCGCCGGCTCGAGAACCTGCTCGACCTGGTGCGGCAGCTGCCGGCGCAAAAAGAACCAGCGCACCCTGTACCCAGCTGAAAAAGCAGCAGGACGCGATGTACCAGCTGGTGGTGAAGCGCTGGATGTTTCTGTGCCTCGCCGGCCAGTATCGCGAGATAGTGCAGTTTGCCACGAAGCACCCGCGCCTGTTCGAGCAGATCGGGGCGAAGATCGCCACGATTCATCCGAAGTACTGGTGGAAGTTTAGCTTCACCCAGTTCGTGACGTACCCGAACCTGTTGCGCTGCCCGAGCAGCGGCTGGAAGCGTTCCGCACCATCATGAAGCAGCTGAAGCAGCGCAATGGGAAGTTTTTCGCCGACCATCTGGCGAAGCTGGCGCCCCAGATCGAGCGCTGCGAGCAGTTTCTGCGGCAGCAGAAGAAGGAGCTGGAGTGGAAGGACGAGCTGGTGAAGCTGAAGGGACAGTTTGCCGACTTTGACCGGCGCAAGGACTACGCGTACTATCTGAAAAACTCCAAGGCGCTCATTAAGAAGTATGCAGACGCTGCGAAGCAAAACAAAAACCGACAGCCCGGGCGCCGCGGAGGCCTTGCCGGGCGCCGCTAATGAGGCTAATAATGTCCAGTCGAATAAATG]
consensusID : consensus_9231#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence
[GAGCAGCGAAACCACCGGCAGCAGCTGCTACTCCTCTACCTCGATGCGGCGGACCTACGACGAGCCCTGCACCAGTATCAGCTGCTCGCCGCGCAGGGCGATCGCCACCTTCCCCAGCAGATAGTGAAGTTCGTGTACGCCGCCCCACGGCACGAGAACCGCCGGCTCGAGAACCTGCTCGACCTGGTGCGGCAGCTGCCGGCGCGCCAGGACCAGCGCACCCTGTACCAGCTGCTGCAGCCGGAAATTATGAAGCGCCCCGCGCAGAACCAGAGCACCCTCGCCATGCTGACAGCGCTCGAGATGGGCCAGGTCGTGGAGGGGAACGGCGAGCTGAAAAAGCAGCAGGACGCGATGTACCAGCTGGTGCTGAAGCGCTGGATGTTTCTNGTGCCTCGNCCCGGCCACNTATNNNCGAGATAANNNCACGTTTNGCCACGAAAAGCACCCCGCNGCCTGNTTCCCAGTTATATCTNGGGCCGAAGATTACCCACGATTTCATCCCGAANGTACTGGTGGGAAGTTTAACTTACCCCATTTCCCNANNTACCCNNA]
[+] EMBL CF542004 [GAGCAGCGAAACCACCGGCAGCAGCTGCTACTCCTCTACCTCGATGCGGCGGACCTACGACGAGCCCTGCACCAGTATCAGCTGCTCGCCGCGCAGGGCGATCGCCACCTTCCCCAGCAGATAGTGAAGTTCGTGTACGCCGCCCCACGGCACGAGAACCGCCGGCTCGAGAACCTGCTCGACCTGGTGCGGCAGCTGCCGGCGCGCCAGGACCAGCGCACCCTGTACCAGCTGCTGCAGCCGGAAATTATGAAGCGCCCCGCGCAGAACCAGAGCACCCTCGCCATGCTGACAGCGCTCGAGATGGGCCAGGTCGTGGAGGGGAACGGCGAGCTGAAAAAGCAGCAGGACGCGATGTACCAGCTGGTGCTGAAGCGCTGGATGTTTCTNGTGCCTCGNCCCGGCCACNTATNNNCGAGATAANNNCACGTTTNGCCACGAAAAGCACCCCGCNGCCTGNTTCCCAGTTATATCTNGGGCCGAAGATTACCCACGATTTCATCCCGAANGTACTGGTGGGAAGTTTAACTTACCCCATTTCCCNANNTACCCNNA]
consensusID : consensus_9231#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence
[CCCCGAGGTTNNAGCGTCAGTTAATTAAAAAACAAACTATGGATCACAGCAGAGTGTGGTGCTGTCTGCTTAGCTTCATCGCAATGGCCGTGCTGTGTAGCGCATCCAGTGCAGCATGCACGCTCCAGGTCCCCGAAACCATGATAACGCGCCTGCTGCAAGCGGATCAGCCCGCCGGCGGCTGCGCAGCTGCTTGGGATAGTCTACTGTCTCGGCTGGAGCAAATGCGCCACAATCTTACGGGCTGCAGCGAGCGCGAAACGACGAACCCGGCACCACCCGATGATACCCGCACCAACGCCCCCTGTCAGCTGCTGCTGAACGAGCTGCAACGGAAAGGGAATCAAACCCTGCTCCAGCTCGACAAAGAAATGGCCAGCAAAGCACTGTACGAGCGCATCGAGCTGGCCAAGGGTGGTGCAGGACCAGGACCGCATCCAACAAGCGATCGAAACGATGCGCACCGAGCAGCGAAACCACCGGCAGCAGCTGCT]
[+] EMBL AL933473 [CCCCGAGGTTNNAGCGTCAGTTAATTAAAAAACAAACTATGGATCACAGCAGAGTGTGGTGCTGTCTGCTTAGCTTCATCGCAATGGCCGTGCTGTGTAGCGCATCCAGTGCAGCATGCACGCTCCAGGTCCCCGAAACCATGATAACGCGCCTGCTGCAAGCGGATCAGCCCGCCGGCGGCTGCGCAGCTGCTTGGGATAGTCTACTGTCTCGGCTGGAGCAAATGCGCCACAATCTTACGGGCTGCAGCGAGCGCGAAACGACGAACCCGGCACCACCCGATGATACCCGCACCAACGCCCCCTGTCAGCTGCTGCTGAACGAGCTGCAACGGAAAGGGAATCAAACCCTGCTCCAGCTCGACAAAGAAATGGCCAGCAAAGCACTGTACGAGCGCATCGAGCTGGCCAAGGGTGGTGCAGGACCAGGACCGCATCCAACAAGCGATCGAAACGATGCGCACCGAGCAGCGAAACCACCGGCAGCAGCTGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9231#0 ------------------------------------------------------------
consensus_9231#3 ------------------------------------------------------------
consensus_9231#1 GTTCGTGTACGCCGCCCCACGGCACGAGAACCGCCGGCTCGAGAACCTGCTCGACCTGGT 60
consensus_9231#2 ----------------------------------------------------GAGCAGCG 8
consensus_9231#0 ----------------ACCCTGTTTCTCTTGCTGTGAGCGTC-AGTAAATTAAAAAAAAA 43
consensus_9231#3 ------------------------CCCCGAGGTTNNAGCGTC-AGTTAATTAAAAAACAA 35
consensus_9231#1 GCGGCAGCTGCCGGCGCAAAAAGAACCAGCGCACCCTGTACCCAGCTGAAAAAGCAGCAG 120
consensus_9231#2 AAACCACCGGCAGCAGCTGCTACTCCTCTACCTCGATGCGGCGGACCTACGACGAGCCCT 68
* * * * *
consensus_9231#0 AAAACAAACCTATGGATCACAGCAGAGTGTGGTGCTGTCTGCTTAGCTTCATCGCAA--T 101
consensus_9231#3 A--------CTATGGATCACAGCAGAGTGTGGTGCTGTCTGCTTAGCTTCATCGCAA--T 85
consensus_9231#1 GACG-----CGATGTACCAGCTGGTGGTGAAGCGCTGGATGTTTCTGTGCCTCGCCGGCC 175
consensus_9231#2 G---------CACCAGTATCAGCTGCTCGCCGCGCAGGGCGATCGCCACCTTCCCCAGCA 119
* * * ** * * * * ** *
consensus_9231#0 GGCCGTGCTGTGTAGCGCA---TCCAGTGCAGCATGCACGCTC-------CAGGTCC--- 148
consensus_9231#3 GGCCGTGCTGTGTAGCGCA---TCCAGTGCAGCATGCACGCTC-------CAGGTCC--- 132
consensus_9231#1 AGTATCGCGAGATAGTGCAGTTTGCCACGAAGCACCCGCGCCTGTTCGAGCAGATCGGGG 235
consensus_9231#2 GATAGTGAAGT-TCGTGTACGCCGCCCCACGGCACGAGAACCGCCGGCTCGAGAACCTGC 178
* * * * * * *** * ** *
consensus_9231#0 CCGAAACCATGATAACGCGCCTG-----CTGCAAGCGGATCAGCC---CGCCGGCGGCTG 200
consensus_9231#3 CCGAAACCATGATAACGCGCCTG-----CTGCAAGCGGATCAGCC---CGCCGGCGGCTG 184
consensus_9231#1 CGAAGATCGCCACGATTCATCCGAAGTACTGGTGGAAGTTTAGCTTCACCCAGTTCGTGA 295
consensus_9231#2 TCGACCTGGTGCGGCAGCTGCCGGCGCGCCAGGACCAGCGCACCCT-GTACCAGCTGCTG 237
* * * * * * * * * *
consensus_9231#0 C-GCA-CTGCTTGGGATAGTCTACTGTCTCGGCTGGAGCAAATGCGCCACAATCTTACGG 258
consensus_9231#3 C-GCAGCTGCTTGGGATAGTCTACTGTCTCGGCTGGAGCAAATGCGCCACAATCTTACGG 243
consensus_9231#1 C-GTACCCGAACCTGTTGCGCTGCCCGAGCAGCGGCTGGAAGCGTTCCGCACCATCATGA 354
consensus_9231#2 CAGCCGGAAATTATGAAGCGCCCCGCGCAGAACCAGAGCACCCTCGCCATG--CTGACAG 295
* * * * * * * * ** * *
consensus_9231#0 -GCTGCAGCGAGCGCGAAACGACGAACCCGGCACCACCCGATGATACCCGCACCAACGCC 317
consensus_9231#3 -GCTGCAGCGAGCGCGAAACGACGAACCCGGCACCACCCGATGATACCCGCACCAACGCC 302
consensus_9231#1 AGCAGCTGAAGCAGCGCAATGGGAAGTTTTTCGCCGACCATC--TGGCGAAGCTGGCGCC 412
consensus_9231#2 CGCTCGAGATGGGCCAGGTCGTGGAGGGGAACGGCGAGCTGAAAAAGCAGCAG-GACGCG 354
** * * * * * * * * ***
consensus_9231#0 CCCTGTCAGCTGCTGCTGGACGAGCTGCAACGGAAAGGGAATCAAACCCTGCTCCAGCTC 377
consensus_9231#3 CCCTGTCAGCTGCTGCTGAACGAGCTGCAACGGAAAGGGAATCAAACCCTGCTCCAGCTC 362
consensus_9231#1 CCAGATCGAGCGCTGC-GAGC-AGTTTCTGCGGCAGCAGAAGAAGGAGCTGGAGTGGAAG 470
consensus_9231#2 ATGTACCAGCTGGTGCTGAA-GCGCTGGATGTTTCTNGTGCCTCGNCCCGGCCACNTATN 413
* * *** * * * * *
consensus_9231#0 GACAAAGAAATGGCCAGCAAAGC-ACTGTACGAGCGCATCGAGCTGGCCAAGG-TGGCGC 435
consensus_9231#3 GACAAAGAAATGGCCAGCAAAGC-ACTGTACGAGCGCATCGAGCTGGCCAAGGGTGGTGC 421
consensus_9231#1 GACGAGCTGGTGAAGCTGAAGGG-ACAGTTTGCCGACTTTGACCGGCGCAAGGACTACGC 529
consensus_9231#2 NNCGAGATAANNNCACGTTTNGCCACGAAAAGCACCCCGCNGCCTGNTTCCCAGTTATAT 473
* * * ** * * * *
consensus_9231#0 AGG--ACCAGGACCGCATCCAACAAGCGATCGAAACG-ATGCG--CACCGAGCAGCGAAA 490
consensus_9231#3 AGG--ACCAGGACCGCATCCAACAAGCGATCGAAACG-ATGCG--CACCGAGCAGCGAAA 476
consensus_9231#1 GTACTATCTGAAAAACTCCAAGGCGCTCATTAAGAAGTATGCAGACGCTGCGAAGCAAAA 589
consensus_9231#2 CTNG-GGCCGAAGATTACCCACGATTTCATCCCGAAN-GTACT---GGTGGGAAGTTTAA 528
* * * * * ** * * * * * ** **
consensus_9231#0 CCA---CCGGCAGC--AGCTGCTACTCCTCTACCTCGATGCGGCGGACCTACGACGAGCC 545
consensus_9231#3 CCA---CCGGCAGC--AGCTGCT------------------------------------- 494
consensus_9231#1 CAAAAACCGACAGCCCGGGCGCCGCGGAGGCCTTGCCGGGCGCCGCTAATGAGGCTAATA 649
consensus_9231#2 CTTACCCCATTTCCCNANNTACCCNNA--------------------------------- 555
* ** * *
consensus_9231#0 CTGCACCAGTATCAGCTGCTCGCCGCGCAGGGCGATCGCCACCTTCCCCAGCAGATAGTG 605
consensus_9231#3 ------------------------------------------------------------
consensus_9231#1 ATGTCCAGTCGAATAAATG----------------------------------------- 668
consensus_9231#2 ------------------------------------------------------------
consensus_9231#0 AAGTTCGTGTACGCCGCCCCACGGCACGAGAACCGCCGGCTCGAGAACCTGCTCGACCTG 665
consensus_9231#3 ------------------------------------------------------------
consensus_9231#1 ------------------------------------------------------------
consensus_9231#2 ------------------------------------------------------------
consensus_9231#0 GTGCGGCAGCTGCCGGCGCGCCAGGACCAGCGCACCCTGTACCAGCTGCTGCAGCCGGAA 725
consensus_9231#3 ------------------------------------------------------------
consensus_9231#1 ------------------------------------------------------------
consensus_9231#2 ------------------------------------------------------------
consensus_9231#0 ATTATGAAGCGCCCCACGCAGAACCAGAGCACCCTCGCCATGCTGACAGCGCTCGAGATG 785
consensus_9231#3 ------------------------------------------------------------
consensus_9231#1 ------------------------------------------------------------
consensus_9231#2 ------------------------------------------------------------
consensus_9231#0 GGCCAGGTCGTGGAGGGGAACGGCGAGCTGAAAAAGCAGCAGGACGCGATGTACCAGCTG 845
consensus_9231#3 ------------------------------------------------------------
consensus_9231#1 ------------------------------------------------------------
consensus_9231#2 ------------------------------------------------------------
consensus_9231#0 GTGCTGAAGCGCTGGATGTTTCTGTGCCTCGCCGGCCAGTATCGCGAGATAGTGCAGTTT 905
consensus_9231#3 ------------------------------------------------------------
consensus_9231#1 ------------------------------------------------------------
consensus_9231#2 ------------------------------------------------------------
consensus_9231#0 GCCACGAAGCACCCGCGCCTGTTCGAGCAGATCGGGGCGAAGATCGCCACGATTCATCCG 965
consensus_9231#3 ------------------------------------------------------------
consensus_9231#1 ------------------------------------------------------------
consensus_9231#2 ------------------------------------------------------------
consensus_9231#0 AAGTACTGGTGGAAGTTTAGCTTCACCCAGTTCGTGACGTACCCGAACCTGTTGCCGCTG 1025
consensus_9231#3 ------------------------------------------------------------
consensus_9231#1 ------------------------------------------------------------
consensus_9231#2 ------------------------------------------------------------
consensus_9231#0 CCCGAGCAGCGGCTGGAAGCGTTCCGCACCATCATGAAGCAGCTGAAGCAGCGCAATGGG 1085
consensus_9231#3 ------------------------------------------------------------
consensus_9231#1 ------------------------------------------------------------
consensus_9231#2 ------------------------------------------------------------
consensus_9231#0 AAGTTTTTCGCCGACCATCTGGCGAAGCTGGCGCCCCAGATCGAGCGCTGCGAGCAGTTT 1145
consensus_9231#3 ------------------------------------------------------------
consensus_9231#1 ------------------------------------------------------------
consensus_9231#2 ------------------------------------------------------------
consensus_9231#0 CTGCGGCAGCAGAAGAAGGAGCTGGAGTGGAAGGACGAGCTGGTGAAGCTGAAGGGACAG 1205
consensus_9231#3 ------------------------------------------------------------
consensus_9231#1 ------------------------------------------------------------
consensus_9231#2 ------------------------------------------------------------
consensus_9231#0 TTTGCCGACTTTGACCGGCGCAAGGACTACGCGTACTTTCTGAAAAACTCCAAGGCGCTC 1265
consensus_9231#3 ------------------------------------------------------------
consensus_9231#1 ------------------------------------------------------------
consensus_9231#2 ------------------------------------------------------------
consensus_9231#0 ATTAAGAAGTATGCAGACGCTGCGAAGCAAAACAAAAACCGACAGCCCGGGCGCCGCGGA 1325
consensus_9231#3 ------------------------------------------------------------
consensus_9231#1 ------------------------------------------------------------
consensus_9231#2 ------------------------------------------------------------
consensus_9231#0 GGTCTTGCCGGGCGCCGCTAATGAGGCTAATAATGTCCAGTCGAAAAAAAAAAATTG 1382
consensus_9231#3 ---------------------------------------------------------
consensus_9231#1 ---------------------------------------------------------
consensus_9231#2 ---------------------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||