cluster # 9311

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Anopheles gambiae
cluster # 9311 cluster # 9311 Sequences # 15 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9311#0 length = 990 sequences # 12
consensus_9311#1 length = 732 sequences # 1

consensus_9311#2 length = 625 sequences # 1
consensus_9311#3 length = 519 sequences # 1

consensusID : consensus_9311#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 990
fasta sequence

                              [AAAAAGCTGCGGAATTCCTCGAGAACTGTTGGCCAACTGGATTCATTTGTAAACATTGTCGCGAAACGATTGCCCTGCGGCCCCCAAAACGATGGATC-TCAAAACGTTCAAATTGCTGCATCCTGTGAAGTACTACAAAGATTACCTCGAAAACAACATTCGTCCCGATGGGCGCGAACTGGAAGAGCTGCGGCCACTGGCTATTAGCTTCGATGTGATCAAAAGCGCGGATGGATCCGCAATAGTGAAAGTGGGCAACACAACGGTAGTGTGCGGAATTAAGGCAGAACTGGCCACACCGAATGCGTTAGCCCCAAGGCACGGCTTTCTCGTACCGAATGTCGATCTGTCACCGGTATCGTCACCGTCGTACCGTCCCGGGCCACCGTGCGATGAGGCTCAGGTGTACAGCCAATCGGTAGCGGACGCGA-TCAGCAATGCCCGCTGCATCGATTTGCAGCAGCTTTGCATCTCGCCCGGAAAGCTGGTATGGTGTTTGTACTGCGATTTAGTATGTCTGGATCATGACGGATGCGTCTTAGAT-GCTGCTATAATAGCACTCGTAGCCGCCTTCCAC-ACAGTTAAAC-TTCCGACCATTCAATACAATAGTGACACAGAGGAAACGGAAGCAGACACATCCAGGCTTTTGCCGTTGACGGTTGACTGTGTGCCTGTAACGACC-T-CGTTCGTGATGGTTGCTGGCCGCTTGATCGCGGATCCGACCACCGAAGAAGAAAAACTTGCGAGCACGACCTTAACGGTAACGGTAAGCGATGGCAAGATGAGCTTTTTCAACCAGTCCGGTGGCGATCCAATGGACAGCAGAACGCTTAAAAAGTGCACCGACAGTGCAATAAAACGCGAACGGTCCGTGAAAAAGATGATTC-AAACCATGCAAAGAAAATCATCCAGCTGAACGCAAATGAAAATAAAACGATTAAGAATTGAAAAAAAAA-AAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTG]

[-] EMBL CNS09KVA             [AAAAAGCTGCGGAATTCCTCGAGAACTGTTGGCCTACTGGATTCATTTGTAAACATTGTCGCGAAACGATTG CCTGCGGCCCCCAAAACGATGGATC TCAAAACGTTCAAATTGCTGCATCCTGTGAAGTACTACAAAGATTACCTCGAAAACAACATTCGTCCCGATGGGCGCGAACTGGAAGAGCTGCGGCCACTGGCTATTAGCTTCGATGTGATCAAAAGCGCGGATGGATCCGCAATAGTGAAAGTGGGCAACACAACGGTAGTGTGCGGAATTAAGGCAGAACTGGCCACACCGAATGCGTTAGCCCCAAGGCACGGCTTTCTCGTACCGAATGTCGATCTGTCACCGGTATCGTCACCGTCGTACCGTCCCAGGCCACCGTGCGATGAGGCTCAGGTGTACAGCCAATCGGTAGCGGACGCGA TCAGCAATGCCCGCTGCATCGATTTGCAGCAGCTTTGCATCTCGCCCGGAAAGCTGGTATGGTGTTTGTACTGCGATTTAGTATGTCTGGATCATGACGGATGCGTCTTAGAT GCTGCTATAATAGCACTCGTAGCCGCCTTCCAC ACAGTTAAAC TTCCGACCATTCAATACAATAGTGACACAGAGGAAACGGAAGCAGACACATCCAGGCTTTTGCCGTTGACGGTTGACTGTGTGCCTGTAACGACC T CGTTCGTGATGGTTGCTGGCCGCTTGATCGCGGATCCGACCACCGAAGAAGAAAAACTTGCGAGCACGACCTTAACGGTAACGGTAAGCGATGGCAAGATGAGCTTTTTCAACCAGTCCGGTGGCGATCCAATGGACAGCAGAACGCTTAAAAAGTGCACCGACAGTGCAATAAAACGCGAACGGTCCGTGAAAAAGATGATTC AAACCATGCAAAGAAAATAATCCAACTGAACGCAAATGAAAATAAA                                                          ]
[-] EMBL CNS097VA             [         CGGAATTCCTCGAGCACTGTTGGCCAACTGGATTCATTTGTAAACATTGTCGCGAAACGATTGGCCTGCGGCCCCCAAAACGATGGTTC TCAAAACGTTCAAATTGCTGCATCCTGTGAAGAACTACAAAGATTACCTCGAAAACAACATTCGTCCCGATGGGCGCGAACTGGAAGAGCTGCGGCCACTGGCTATTAGCTTCGATGTGATCAAAAGCGCGGATGGATCCGCAATAGTGAAAGTGGGCAAAACAACGGTAGTGTGCGGAATTAAGGCAGAACTGGCCACACCGAATGCGTTAGCCCCAAGGCACGGCTTTCTCGTACCGAATGTCGTTCTGTCACCGGTATCGTCACCGTCGTACCGTCCCGGGCCACCGTGCGATGAGGCTCAGGTGTACAGCCAATCGGTAGCGGACGCGA TCAGCAATGCCCGCTGCATCGATTTGCAGCAGCTTTGCATCTCGCCCGGAAAGCTGGTATGGTGTTTGTACTGCGATTTAGTATGTCTGGATCATGACGGATGCGTCTTAGAT GCTGCTATAATAGCACTCGTAGCCGCCTTCCAC ACAGTTAAAC TTCCGACCATTCAATACAATAGTGACACAGAGGAAACGGAAGCAGACACATCCAGGCTTTTGCCGTTGACGGTTGACTGTGTGCCTGTAACGACC T CGTTCGTGATGGTTGCTGGCCGCTTGATCGCGGATCCGACCACCGAAGAAGAAAAACTTGCGAGCACGACCTTAACGGTAACGGTAAGCGATGGCAAGATGAGCTTTTTCAACCAGTCCGGTGGCGATCCAATGGACAGCAGAACGCTTAAAAAGTGCACCGACAGTGCAATAAAACGCGAACGGTCCGTGAAAAAGATGATTC AAACCATGCAAAGAAAATCATCCAGCTGAACGCAAATGAAAATAAAACGATTGTGAATTG                                            ]
[-] EMBL CNS09AOM             [                 CTCGAGAACTGTTGGCCAACTGGATTCATTTGTAAACATTGTCGCGAAACGATTGCCCCGCGGCCCCCAAAACGATGGATC TCAAAACGTTCAAATTGCTGCATCCTGTGAAGTACTACAAAGATTACCTCGAAAACAACATTCGTCCCGATGGGCGCGAACTGGAAGAGCTGCGGCAACTGGCTATTAGCTTCGATGTGATCAAAAGCGCGGATGGATCCGCAATAGTGAAAGTGGGCAACACAACGGTAGTGTGCGGAATTAAGGCAGAACTGGCCACACCGAATGCGTTAGCCCCAAGGCACGGCTTTCTCGTACCGAATGTCGTTCTGTCACCGGTATCGTCACCGTCGTACCGTCCCGGGCCACCGTGCGATGAGGCTCAGGTGTACAGCCAATCGGTAGCGGACGCGA TCAGCAATGCCCGCTGCATCGATTTGCAGCAGCTTTGCATCTCGCCCGGAAAGCTGGTATGGTGTTTGTACTGCGATTTAGTATGTCTGGATCATGACGGATGCGTCTTAGAT GCTGCTATAATAGCACTCGTAGCCGCCTTCCAC ACAGTTAAAC TTCCGACCATTCAATACAATAGTGACACAGAGGAAACGGAAGCAGACACATCCAGGCTTTTGCCGTTGACGGTTGACTGTGTGCCTGTAACGACC T CGTTCGTGATGGTTGCTGGCCGCTTGATCGCGGATCCGACCACCGAAGAAGAAAAACTTGCGAGCACGACCTTAACGGTAACGGTAAGCGATGGCAAGATGAGCTTTTTCAACCAGTCCGGTGGCGATCCAATGGACAGCAGAACGCTTAAAAAGTGCACCGACAGTGCAATAAAACGCGAACGGTCCGTGAAAAAGATGATTC AAACCATGCAAAGAAAATCATCCAG TGAACGCAAATTAAA                                                               ]
[+] EMBL CNS09OXC             [                                            aaaaGTAAACATTGTCGCGAAACGATTGCCCTGCGGCCCCCAAAACGATGGATC TCAAAACGTTCAAATTGCTGCATCCTGTGAAGTACTACAAAGATTACCTCGAAAACAACATTCGTCCCGATGGGCGCGAACTGGAAGAGCTGCGGCCACTGGCTATTAGCTTCGATGTGATCAAAAGCGCGGATGGATCCGCAATAGTGAAAGTGGGCAACACAACGGTAGTGTGCGGAATTAAGGCAGAGCTGGCCACACCGAATGCGTTA CACCGGGGCACGGCTTTCTCGTACCGAATGTCGATCTGTCACCGGTATCGTCACCGTCGTACCGTCCCGGGCCACCGTGCGATGAGGCTCAGGTGTACAGCCAATCGGTAGCGGACGCGA TCAGCAATGCCCGCTGCATCGATTTGCAGCAGCTTTGCATCTCGCCCGGAAAGCTGGTATGGTGTTTGTACTGCGATTTAGTATGTCTGGATCATGACGGATGCGTCTTAGAT GCGGCTATAATAGCACTCGTAGCCGCTTTCCAC ACAGTAAAAC TTCCCACCATTCAATACAACAGTGACACAGAGGAAACGGAAGCAGACACATCCAGGCTTTTGCCGTTGACGGTTGACTGTGTGCCTGTAACGACC T CGTTCGTGATGGTTGCTGGCCGCTTGATTGCGGATCCGACCACCGAAGAAGAAAAACTTGCGAGCACGACCTTAACGGTAACGGTAAGCGATGGCAAGATGAGCTTTTTCAACCAGTCCGGTGGCGATCCAATGGACAGCAGAACGCTTAAAAAGTGCACCGACAGTGCAATAAAACGCGAACGGTCCGTGAAAAAGATGATTC TAACCATGCAAAGAAAATCATCCAGCTGAACGCAAATGAAAATAAAACGATTAAGAATTGAAAAAAAAA AAAAAAAAAAAAAAGGGCAAATGTGCCCGAGCTG]
[+] EMBL CNS09KV9             [                                                    ACATTGTCGCGAAACGATTGCCCTGCGGCCCCCAAAACGATGGATC TCAAAACGTTCAAATTGCTGCATCCTGTGAAGTACTACAAAGATTACCTCGAAAACAACATTCGTCCCGATGGGCGCGAACTGGAAGAGCTGCGGCCACTGGCTATTAGCTTCGATGTGATCAAAAGCGCGGATGGATCCGCAATAGTGAAAGTGGGCAACACAACGGTAGTGTGCGGAATTAAGGCAGAACTGGCCACACCGAATGCGTTA CCCCAAGGCACGGCTTTCTCGTACCGAATGTCGATCTGTCACCGGTATCGTCACCGTCGTACCGTCCCAGGCCACCGTGCGATGAGGCTCAGGTGTACAGCCAATCGGTAGCGGACGCGA TCAGCAATGCCCGCTGCATCGATTTGCAGCAGCTTTGCATCTCGCCCGGAAAGCTGGTATGGTGTTTGTACTGCGATTTAGTATGTCTGGATCATGACGGATGCGTCTTAGAT GCTGCTATAATAGCACTCGTAGCCGCCTTCCAC ACAGTTAAAC TTCCGACCATTCAATACAATAGTGACACAGAGGAAACGGAAGCAGACACATCCAGGCTTTTGCCGTTGACGGTTGACTGTGTGCCTGTAACGACC T CGTTCGTGATGGTTGCTGGCCGCTTGATCGCGGATCCGACCACCGAAGAAGAAAAACTTGCGAGCACGACCTTAACGGTAACGGTAAGCGATGGCAAGATGAGCTTTTTCAACCAGTCCGGTGGCGATCCAATGGACAGCAGAACGCTTAAAAAGTGCACCGACAGTGCAATAAAACGCGAACGGTCCGTGAAAAAGATGATTC AAACCATGCAAAGAAAATCATCCAGCTGAACGCAAATGAAAATAAAACGATTAAGAATTGAAAAAAAAACAAAAAAAAAAAAAAGGCCACATGTGCTCGAG   ]
[+] EMBL CNS09MTU             [                                                          TCGCGAAACGATTGCGCTGCGGCCCCCAAAACGATGGATC TCAAAACGTTCAAATTGCTGCATCCTGTGAAGTACTACAAAGATTACCTCGAAAACAACATTCGTCCCGATGGGCGCGAACTGGAAGAGCTGCGGCCACTGGCTATTAGCTTCGATGTGATCAAAAGCGCGGATGGTTCCGCAATAGTGAAAGTGGGCAACACAACGGTAGTGTGCGGAATTAAGGCAGAACTGGCCACACCGAATGCGTTA CCCCAAGGCACGGCTTTCTCGTACCGAATGTCGATCTGTCACCGGTATCGTCACCGTCGTACCGTCCCGGGCCACCGTGCGATGAGGCTCAGGTGTACAGCCAATCGGTAGCGGACGCGA TCAGCAATGCCCGCTGCATCGATTTGCAGCAGCTTTGCATCTCGCCCGGAAAGCTGGTATGGTGTTTGTACTGCGATTTAGTATGTCTGGATCATGACGGATGCGTCTTAGAT GCTGCTATAATAGCACTCGTAGCCGCCTTCCAC ACAGTTAAAC TTCCGACCATTCAATACAATAGTGACACAGAGGAAACGGAAGCAGACACATCCAGGCTTTTGCCGTTGACGGTTGACTGTGTGCCTGTAACGACC T CGTTCGTGATGGTTGCTGGCCGCTTGATCGCGGATCCGACCACCGAAGAAGAAAAACTTGCGAGCACGACCTTAACGGTAACGGTAAGCGATGGCAAGAT                                                                                                                                                                                                                 ]
[+] EMBL CNS097V9             [                                                           CGCG AACGATTGCCCTGCGGCCCCCAAAACGATGGATC TCAAAACGTTCAAATTGCTGCATCCTGTGAAGTACTACAAAGATTACCTCGAAAACAACATTCGTCCCGATGGGCGCGAACTGGAAGAGCTGCGGCCACTGGCTATTAGCTTCGATGTGATCAAAAGCGCGGATGGATCCGCAATAGTGAAAGTGGGCAACACAACGGTAGTGTGCGGAATTAAGGCAGAACTGGCCACACCGAATGCGTTA CCCCAAGGCACGGCTTTCTCGTACCGAATGTCGATCTGTCACCGGTATCGTCACCGTCGTACCGTCCCGGGCCACCGTGCGATGAGGCTCAGGTGTACAGCCAATCGGTAGCGGACGCGA TCAGCAATGCCCGCTGCATCGATTTGCAGCAGCTTTGCATCTCGCCCGGAAAGCTGGTATGGTGTTTGTACTGCGATTTAGTATGTCTGGATCATGACGGATGCGTCTTAGAT GCTGCTATAATAGCACTCGTAGCCGCCTTCCAC ACAGTTAAAC TTCCGACCATTCAATACAATAGTGACACAGAGGAAACGGAAGCAGACACATCCAGGCTTTTGCCGTTGACGGTTGACTGTGTGCCTGTAACGACC T CGTTCGTGATGGTTGCTGGCCGCTTGATCGCGGATCCGACCACCGAAGAAGAAAAACTTGCGAGCACGACCTTAACGGTAACGGTAAGCGATGGCAAGATGAGCTTTTTCAACCAGTCCGGTGGCGATCCAATGGACAGCAGAACGCTTAAAAAGTGCACCGACAGTGCAATAAAACGCGAACGGTCCGTGAAAAAGATGATTC AAACCATGCAAAGAAAATCATCCAGCTGAACGCAAATGAAAATAAAACGATTTAGAATTG AAAAAAAA ACAAAAAAAAAAAAGGCCACATGTGC        ]
[+] EMBL CNS097D0             [                                                                AACGATTGCCC GCGGCCCCCAAAACGATGGATC TCAAAACGTTCAAATTGCTGCATCCTGTGAAGTACTACAAAGATTACCTCGAAAACAACATTCGTCCCGATGGGCGCGAACTGGAAGAGCTGCGGCCACTGGCTATTAGCTTCGATGTGATCAAAAGCGCGGATGGATCCGCAATAGTGAAAGTGGGCAACACAACGGTAGTGTGCGGAATTAAGGCAGAGCTGGCCACACCGAATGCGTTA CACCGGGGCACGGCTTTCTCGTACCGAATGTCGATCTGTCACCGGTATCGTCACCGTCGTACCGTCCCGGGCCACCGTGCGATGAGGCTCAGGTGTACAGCCAATCGGTAGCGGACGCGAGTCAGCAATGCCCGCTGCATCGATTTGCAGCAGCTTTGCATCTCGCCCGGAAAGCTGGTATGGTGTTTGTACTGCGATTTAGTATGTCTGGATCATGACGGATGCGTCTTAGAT GCGGCTATAATAGCACTCGTAGCCGCTTTCCAC ACAGTAAAAC TTCCCACCATTCAATACAATAGTGACACAGAGGAAACGGAAGCAGACACATCCAGGCTTTTGCCGTTGACGGTTGACTGTGTGCCTGTAACGACC T CGTTCGTGATGGTTGCTGGCCGCTTGATTGCGGATCCGACCACCGAAGAA                                                                                                                                                                                                                                                                   ]
[+] EMBL BX624232             [                                                                       GCCCTGCGGCCCCCAAAACGATGGATCATCAAAACGTTCAAATTGCTGCATCCTGTGAAGTACTACAAAGATTACCTCGAAAACAACATTCGTCCCGATGGGCGCGAACTGGAAGAGCTGCGGCCACTGGCTATTAGCTTCGATGTGATCAAAAGCGCGGATGGATCCGCAATAGTGAAAGTGGGCAACACAACGGTAGTGTGCGGAATTAAGGCAGAACTGGCCACACCGAATGCGTTAGCCTCAAGGCACGGCTTTCTCGTACCGAATGTCGATCTGTCACCGGTATCGTCACCGTCGTACCGTCCCGGGCCACCGTGCGATGAGGCTCAGGTGTACAGCCAATCGGTAGCGGACGCGA TCAGCAATGCCCGCTGCATCGATTTGCAGCAGCTTTGCATCTCGCCCGGAAAGCTGGTATGGTGTTTGTACTGCGATTTATTATGTCTGGATCATGACGGATGCGTCTTAGAT GCTGCTATAATAGCACTCGTAGCCGCCTNCCAC ACAGTTAAACNTTCCGACCATTCAATACAATAGTGACACAGANGAAACGGAAGCAGAC                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BM627393             [                                                                                                                                                                                                                                                                                   ccgATTAAGGCAGAACTGGCCACACCGAATGCGTTAGCCCCGAGGCACGGCTTTCTCGTACCGAATGTCGATCTGTCACCGGTATCGTCACCGTCGTACCGTCCCGGGCCACCGTGCGATGAGGCTCAGGTGTACAGCCAATCGGTAGCGGACGCGA TCAGCAATGCCCGCTGCATCGATTTGCAGCAGCTTTGCATCTCGCCCGGAAAGCTGGTATGGTGTTTGTACTGCGATTTAGTATGTCTGGATCATGACGGATGCGTCTTAGAT GCTGCTATAATAGCACTCGTAGCCGCTTTCCAC ACAGTAAATC TTCCCACCATTCAATACAATAGTGACACAGAGGAAACGGAAGCAGACACATCCAGGCTTTTGCCGTTGACGGTTGACTGTGTGCCTGTAACGACC T CGTTCGTGATGGTTGCTGGCCGCTTGATCGCGGATCCGACCACCGAAGAAGAAAAACTTGCGAGCACGACCTTAACGGTAACGGTAAGCGATGGCAAGATGAGCTTTTTCAACCAGTCCGGTGGCGATCCAATGGACAGCAGAACGCTTAAAAAGTGCACCGACAGTGCAATAAAACGCGAACGGTCCGTGAAAAAGATGATTCAAAACCATGCAAAGAAAATCATCCAGCTGAACGCGAATGAAAATAAAA                                                         ]
[-] EMBL CNS09MTV             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTAGATAGCTGCTATAATAGCACTCGTAGCCGCCTTCCACAACAGTTAAAC TTCCGACCATTCAATACAATAGTGACACAGAGGAAACGGAAGCAGACACATCCAGGCTTTTGCCGTTGACGGTTGACTGTGTGCCTGTAACGACCATACGTTCGTGATGGTTGCTGGCCGCTTGATCGCGGATCCGACCACCGAAGAAGAAAAACTTGCGAGCACGACCTTAACGGTAACGGTAAGCGATGGCAAGATGAGCTTTTTCAACCAGTCCGGTGGCGATCCAATGGACAGCAGAACGCTTAAAAAGTGCACCGACAGTGCAATAAAACGCGAACGGTCCGTGAAAAAGATGATTC AAACCATGCAAAGAAAATCATCCAGCTGAACGCAAATGAAAA                                                              ]
[-] EMBL CNS097D1             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CCGACCACCGAAGAAGAAAAACTTGCGAGCACGACCTTAACGGTAACGGTAAGCGATGGCAAGATGAGCTTTTTCAACCAGTCCGGTGGCGATCCAATGGACAGCAGAACGCTTAAAAAGTGCACCGACAGTGCAATAAAACGCGAA                                                                                                                               ]




>consensus_9311#0
AAAAAGCTGCGGAATTCCTCGAGAACTGTTGGCCAACTGGATTCATTTGTAAACATTGTC
GCGAAACGATTGCCCTGCGGCCCCCAAAACGATGGATCTCAAAACGTTCAAATTGCTGCA
TCCTGTGAAGTACTACAAAGATTACCTCGAAAACAACATTCGTCCCGATGGGCGCGAACT
GGAAGAGCTGCGGCCACTGGCTATTAGCTTCGATGTGATCAAAAGCGCGGATGGATCCGC
AATAGTGAAAGTGGGCAACACAACGGTAGTGTGCGGAATTAAGGCAGAACTGGCCACACC
GAATGCGTTAGCCCCAAGGCACGGCTTTCTCGTACCGAATGTCGATCTGTCACCGGTATC
GTCACCGTCGTACCGTCCCGGGCCACCGTGCGATGAGGCTCAGGTGTACAGCCAATCGGT
AGCGGACGCGATCAGCAATGCCCGCTGCATCGATTTGCAGCAGCTTTGCATCTCGCCCGG
AAAGCTGGTATGGTGTTTGTACTGCGATTTAGTATGTCTGGATCATGACGGATGCGTCTT
AGATGCTGCTATAATAGCACTCGTAGCCGCCTTCCACACAGTTAAACTTCCGACCATTCA
ATACAATAGTGACACAGAGGAAACGGAAGCAGACACATCCAGGCTTTTGCCGTTGACGGT
TGACTGTGTGCCTGTAACGACCTCGTTCGTGATGGTTGCTGGCCGCTTGATCGCGGATCC
GACCACCGAAGAAGAAAAACTTGCGAGCACGACCTTAACGGTAACGGTAAGCGATGGCAA
GATGAGCTTTTTCAACCAGTCCGGTGGCGATCCAATGGACAGCAGAACGCTTAAAAAGTG
CACCGACAGTGCAATAAAACGCGAACGGTCCGTGAAAAAGATGATTCAAACCATGCAAAG
AAAATCATCCAGCTGAACGCAAATGAAAATAAAACGATTAAGAATTGAAAAAAAAAAAAA
AAAAAAAAAAGGCCACATGTGCCCGAGCTG

consensusID : consensus_9311#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 732
fasta sequence

                              [GCGGCCCCCAAAACGATGGATCTCAAAACGTTCAAATTGCTGCATCCTGTGAAGTACTACAAAGATTACCTCGAAAACAACATTCGTCCCGATGGGCGCGAACTGGAAGAGCTGCGGCCACTGGCTATTAGCTTCGATGTGATCAAAAGCGCGGATGGATCCGCAATAGTGAAAGTGGGCAACACAACGGTAGTGTGCGGAATTAAGGCAGAACTGGCCACACCGAATGCGTTAGCCCCAAGGCACGGCTTTCTCGTACCGAATGTCGATCTGTCACCGGTATCGTCACCGTCGTACCGTCCCGGGCCACCGTGCGATGAGGCTCAGGTGTACAGCCAATCGGTAGCGGACGCGATCAGCAATGCCCGCTGCATCGATTTGCAGCAGCTTTGCATCTCGCCCGGAAAGCTGGTATGGTGTTTGTACTGCGATTTANTATGTCTGGATCATGACGGATGCGTCTTAGATGCTGCTATAATAGCACTCGTAGCCGCCTTCCACACAGTTAAACTTCCGACCATTCAATACAATAGTGACACAGAGGAAACGGAAGCAGACACATCCAGGCTTTTGCCGTTGACNGGTTGACTGTGTGCCTGTAACGACCTCGTTCGTGATGGTTGCTGGATATCATCTATCATCTTCCAGCCGCTTGATCGCGGATCCGACCACCGAAGAANAAAACTTGCGAGCACGACCTTAACGGTAACGGTNAGCGATGGCAAGATGAGC]

[+] EMBL BX626303             [GCGGCCCCCAAAACGATGGATCTCAAAACGTTCAAATTGCTGCATCCTGTGAAGTACTACAAAGATTACCTCGAAAACAACATTCGTCCCGATGGGCGCGAACTGGAAGAGCTGCGGCCACTGGCTATTAGCTTCGATGTGATCAAAAGCGCGGATGGATCCGCAATAGTGAAAGTGGGCAACACAACGGTAGTGTGCGGAATTAAGGCAGAACTGGCCACACCGAATGCGTTAGCCCCAAGGCACGGCTTTCTCGTACCGAATGTCGATCTGTCACCGGTATCGTCACCGTCGTACCGTCCCGGGCCACCGTGCGATGAGGCTCAGGTGTACAGCCAATCGGTAGCGGACGCGATCAGCAATGCCCGCTGCATCGATTTGCAGCAGCTTTGCATCTCGCCCGGAAAGCTGGTATGGTGTTTGTACTGCGATTTANTATGTCTGGATCATGACGGATGCGTCTTAGATGCTGCTATAATAGCACTCGTAGCCGCCTTCCACACAGTTAAACTTCCGACCATTCAATACAATAGTGACACAGAGGAAACGGAAGCAGACACATCCAGGCTTTTGCCGTTGACNGGTTGACTGTGTGCCTGTAACGACCTCGTTCGTGATGGTTGCTGGATATCATCTATCATCTTCCAGCCGCTTGATCGCGGATCCGACCACCGAAGAANAAAACTTGCGAGCACGACCTTAACGGTAACGGTNAGCGATGGCAAGATGAGC]




>consensus_9311#1
GCGGCCCCCAAAACGATGGATCTCAAAACGTTCAAATTGCTGCATCCTGTGAAGTACTAC
AAAGATTACCTCGAAAACAACATTCGTCCCGATGGGCGCGAACTGGAAGAGCTGCGGCCA
CTGGCTATTAGCTTCGATGTGATCAAAAGCGCGGATGGATCCGCAATAGTGAAAGTGGGC
AACACAACGGTAGTGTGCGGAATTAAGGCAGAACTGGCCACACCGAATGCGTTAGCCCCA
AGGCACGGCTTTCTCGTACCGAATGTCGATCTGTCACCGGTATCGTCACCGTCGTACCGT
CCCGGGCCACCGTGCGATGAGGCTCAGGTGTACAGCCAATCGGTAGCGGACGCGATCAGC
AATGCCCGCTGCATCGATTTGCAGCAGCTTTGCATCTCGCCCGGAAAGCTGGTATGGTGT
TTGTACTGCGATTTANTATGTCTGGATCATGACGGATGCGTCTTAGATGCTGCTATAATA
GCACTCGTAGCCGCCTTCCACACAGTTAAACTTCCGACCATTCAATACAATAGTGACACA
GAGGAAACGGAAGCAGACACATCCAGGCTTTTGCCGTTGACNGGTTGACTGTGTGCCTGT
AACGACCTCGTTCGTGATGGTTGCTGGATATCATCTATCATCTTCCAGCCGCTTGATCGC
GGATCCGACCACCGAAGAANAAAACTTGCGAGCACGACCTTAACGGTAACGGTNAGCGAT
GGCAAGATGAGC

consensusID : consensus_9311#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence

                              [CTAGGCAGATCCCCGTTTAAGTACTACAAAGATTACTCCCNAAACACATTCGTNNCGATGGGCGCGAACTGGAAGAGCTGCGGCACTGGCTATTAGCTTCGATGTGATCAAAAGCGCGGATGTGATCCGCAATAGTGAAAGTGGGCAACACAACGGTAGTGTGCGGAATTAAGGCAGAACTGGCCACACCGAATGCGTTAGCCCCAAGGACACGGTTTCTCGTACCGAATGTCGATCTGTCACCGGTATCGGTCCACTGTCGGTACCCGTCCCNTGTNACACGCAGTTGCGATTGAGGCGTCAAGTTGTACAAGNCAAGTCGGTAGNCGTGGACGCGAATCAGGCTAAGTTGGCCCGCTAGTCATCTGAATTTGTAGCAGAGACACACTATANAGCATCTTCNGACCCCGGANCACGTCTGGTACTGAGTAGTTGCTGGACATATGGCGAGTTTAGGATACATTGTCTTGGGATCAATTGGAACGGGAATAGCAAGTCTNTANAGATTGCCTTGTTAATTAATTAAGGCACTTCTCGATTAGGCCCGNTCTTNTCCCAACAGCACANTTCACACAATCTATCCGAAACATTTCCANNTACAATATTAACGAGTNGAACAACAGAA]

[+] EMBL AL695250             [CTAGGCAGATCCCCGTTTAAGTACTACAAAGATTACTCCCNAAACACATTCGTNNCGATGGGCGCGAACTGGAAGAGCTGCGGCACTGGCTATTAGCTTCGATGTGATCAAAAGCGCGGATGTGATCCGCAATAGTGAAAGTGGGCAACACAACGGTAGTGTGCGGAATTAAGGCAGAACTGGCCACACCGAATGCGTTAGCCCCAAGGACACGGTTTCTCGTACCGAATGTCGATCTGTCACCGGTATCGGTCCACTGTCGGTACCCGTCCCNTGTNACACGCAGTTGCGATTGAGGCGTCAAGTTGTACAAGNCAAGTCGGTAGNCGTGGACGCGAATCAGGCTAAGTTGGCCCGCTAGTCATCTGAATTTGTAGCAGAGACACACTATANAGCATCTTCNGACCCCGGANCACGTCTGGTACTGAGTAGTTGCTGGACATATGGCGAGTTTAGGATACATTGTCTTGGGATCAATTGGAACGGGAATAGCAAGTCTNTANAGATTGCCTTGTTAATTAATTAAGGCACTTCTCGATTAGGCCCGNTCTTNTCCCAACAGCACANTTCACACAATCTATCCGAAACATTTCCANNTACAATATTAACGAGTNGAACAACAGAA]




>consensus_9311#2
CTAGGCAGATCCCCGTTTAAGTACTACAAAGATTACTCCCNAAACACATTCGTNNCGATG
GGCGCGAACTGGAAGAGCTGCGGCACTGGCTATTAGCTTCGATGTGATCAAAAGCGCGGA
TGTGATCCGCAATAGTGAAAGTGGGCAACACAACGGTAGTGTGCGGAATTAAGGCAGAAC
TGGCCACACCGAATGCGTTAGCCCCAAGGACACGGTTTCTCGTACCGAATGTCGATCTGT
CACCGGTATCGGTCCACTGTCGGTACCCGTCCCNTGTNACACGCAGTTGCGATTGAGGCG
TCAAGTTGTACAAGNCAAGTCGGTAGNCGTGGACGCGAATCAGGCTAAGTTGGCCCGCTA
GTCATCTGAATTTGTAGCAGAGACACACTATANAGCATCTTCNGACCCCGGANCACGTCT
GGTACTGAGTAGTTGCTGGACATATGGCGAGTTTAGGATACATTGTCTTGGGATCAATTG
GAACGGGAATAGCAAGTCTNTANAGATTGCCTTGTTAATTAATTAAGGCACTTCTCGATT
AGGCCCGNTCTTNTCCCAACAGCACANTTCACACAATCTATCCGAAACATTTCCANNTAC
AATATTAACGAGTNGAACAACAGAA

consensusID : consensus_9311#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 519
fasta sequence

                              [GCCCCAGGTGTTTNTCAAAACGTTCAAATTGCTGCATCTGTGAAGTACTACAAAGATTACCTCGAAAACAACATTCGTCCCGATGGGCGCGAACTGGAAGAGCTGCGGCCACTGGCTATTAGCTTCGATGTGATCAAAAGCGCGGATGGATCCGCAATAGTGAAAGTGGGCAACACAACGGTAGTGTGCGGAATTAAGGCAGAACTGGCCACACCGAATGCGTTAGCCCCAAGGCACGGCTTTCTCGTACCGAATGTCGATCTGTCACCGGTATCGTCACCGTCGTACCGTCCCGGGCACCGTGCGATGAGGCTCAGGTGTACAGCCAATCGGTAGCGGACGCGATCAGCAATGCCCGCTGCATCGATTTGCAGCAGCTTTGCATCTCGCCCGGAAAGCTGGTATGGTGTAATGTACTGCGATTTAGTATGTCTGGATCATGACGGATGCGTCTTAGATGCTGCTATAATAGCACTCGNTAGCCGCCTTCCACACAGTTAAACTTCCGACCATTCAATA]

[+] EMBL AL697563             [GCCCCAGGTGTTTNTCAAAACGTTCAAATTGCTGCATCTGTGAAGTACTACAAAGATTACCTCGAAAACAACATTCGTCCCGATGGGCGCGAACTGGAAGAGCTGCGGCCACTGGCTATTAGCTTCGATGTGATCAAAAGCGCGGATGGATCCGCAATAGTGAAAGTGGGCAACACAACGGTAGTGTGCGGAATTAAGGCAGAACTGGCCACACCGAATGCGTTAGCCCCAAGGCACGGCTTTCTCGTACCGAATGTCGATCTGTCACCGGTATCGTCACCGTCGTACCGTCCCGGGCACCGTGCGATGAGGCTCAGGTGTACAGCCAATCGGTAGCGGACGCGATCAGCAATGCCCGCTGCATCGATTTGCAGCAGCTTTGCATCTCGCCCGGAAAGCTGGTATGGTGTAATGTACTGCGATTTAGTATGTCTGGATCATGACGGATGCGTCTTAGATGCTGCTATAATAGCACTCGNTAGCCGCCTTCCACACAGTTAAACTTCCGACCATTCAATA]




>consensus_9311#3
GCCCCAGGTGTTTNTCAAAACGTTCAAATTGCTGCATCTGTGAAGTACTACAAAGATTAC
CTCGAAAACAACATTCGTCCCGATGGGCGCGAACTGGAAGAGCTGCGGCCACTGGCTATT
AGCTTCGATGTGATCAAAAGCGCGGATGGATCCGCAATAGTGAAAGTGGGCAACACAACG
GTAGTGTGCGGAATTAAGGCAGAACTGGCCACACCGAATGCGTTAGCCCCAAGGCACGGC
TTTCTCGTACCGAATGTCGATCTGTCACCGGTATCGTCACCGTCGTACCGTCCCGGGCAC
CGTGCGATGAGGCTCAGGTGTACAGCCAATCGGTAGCGGACGCGATCAGCAATGCCCGCT
GCATCGATTTGCAGCAGCTTTGCATCTCGCCCGGAAAGCTGGTATGGTGTAATGTACTGC
GATTTAGTATGTCTGGATCATGACGGATGCGTCTTAGATGCTGCTATAATAGCACTCGNT
AGCCGCCTTCCACACAGTTAAACTTCCGACCATTCAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9311#0      AAAAAGCTGCGGAATTCCTCGAGAACTGTTGGCCAACTGGATTCATTTGTAAACATTGTC 60
consensus_9311#1      ------------------------------------------------------------
consensus_9311#3      ------------------------------------------------------------
consensus_9311#2      ------------------------------------------------------------
                                                                                  

consensus_9311#0      GCGAAACGATTGCCCTGCGGCCCCCAAAACGATGGATCTCAAAACGTTCAAATTGCTGCA 120
consensus_9311#1      ----------------GCGGCCCCCAAAACGATGGATCTCAAAACGTTCAAATTGCTGCA 44
consensus_9311#3      --------------------GCCCCA----GGTGTTTNTCAAAACGTTCAAATTGCTGCA 36
consensus_9311#2      -----------------------------------------------CTAGGCAGATCC- 12
                                                                       *    * * * 

consensus_9311#0      TCCTGTGAAGTACTACAAAGATTACCTCGAAAACAACATTCGTCCCGATGGGCGCGAACT 180
consensus_9311#1      TCCTGTGAAGTACTACAAAGATTACCTCGAAAACAACATTCGTCCCGATGGGCGCGAACT 104
consensus_9311#3      TC-TGTGAAGTACTACAAAGATTACCTCGAAAACAACATTCGTCCCGATGGGCGCGAACT 95
consensus_9311#2      -CCGTTTAAGTACTACAAAGATTACTCCCNAAACA-CATTCGTNNCGATGGGCGCGAACT 70
                       *   * ******************  *  ***** *******  ***************

consensus_9311#0      GGAAGAGCTGCGGCCACTGGCTATTAGCTTCGATGTGATCAAAAGCGCGGATG-GATCCG 239
consensus_9311#1      GGAAGAGCTGCGGCCACTGGCTATTAGCTTCGATGTGATCAAAAGCGCGGATG-GATCCG 163
consensus_9311#3      GGAAGAGCTGCGGCCACTGGCTATTAGCTTCGATGTGATCAAAAGCGCGGATG-GATCCG 154
consensus_9311#2      GGAAGAGCTGCGGC-ACTGGCTATTAGCTTCGATGTGATCAAAAGCGCGGATGTGATCCG 129
                      ************** ************************************** ******

consensus_9311#0      CAATAGTGAAAGTGGGCAACACAACGGTAGTGTGCGGAATTAAGGCAGAACTGGCCACAC 299
consensus_9311#1      CAATAGTGAAAGTGGGCAACACAACGGTAGTGTGCGGAATTAAGGCAGAACTGGCCACAC 223
consensus_9311#3      CAATAGTGAAAGTGGGCAACACAACGGTAGTGTGCGGAATTAAGGCAGAACTGGCCACAC 214
consensus_9311#2      CAATAGTGAAAGTGGGCAACACAACGGTAGTGTGCGGAATTAAGGCAGAACTGGCCACAC 189
                      ************************************************************

consensus_9311#0      CGAATGCGTTAGCCCCAAGG-CACGGCTTTCTCGTACCGAATGTCGATCTGTCACCGGTA 358
consensus_9311#1      CGAATGCGTTAGCCCCAAGG-CACGGCTTTCTCGTACCGAATGTCGATCTGTCACCGGTA 282
consensus_9311#3      CGAATGCGTTAGCCCCAAGG-CACGGCTTTCTCGTACCGAATGTCGATCTGTCACCGGTA 273
consensus_9311#2      CGAATGCGTTAGCCCCAAGGACACGG-TTTCTCGTACCGAATGTCGATCTGTCACCGGTA 248
                      ******************** ***** *********************************

consensus_9311#0      TCG--TCACCGTCG-TACC-GTCCCGGGCCACCGTGCGATGAGGCTCAGGTGTACAGCCA 414
consensus_9311#1      TCG--TCACCGTCG-TACC-GTCCCGGGCCACCGTGCGATGAGGCTCAGGTGTACAGCCA 338
consensus_9311#3      TCG--TCACCGTCG-TACC-GTCCCGGGC-ACCGTGCGATGAGGCTCAGGTGTACAGCCA 328
consensus_9311#2      TCGGTCCACTGTCGGTACCCGTCCCNTGTNACACGCAGTTGCGATTGAGGCGTCAAGTTG 308
                      ***   *** **** **** *****  *  **     * ** *  * *** **  **   

consensus_9311#0      ATCGGTAGCGGACGCGATCAGCAATGCCCGCTGCATCGATTTGCAGCAGCTTTGCATCTC 474
consensus_9311#1      ATCGGTAGCGGACGCGATCAGCAATGCCCGCTGCATCGATTTGCAGCAGCTTTGCATCTC 398
consensus_9311#3      ATCGGTAGCGGACGCGATCAGCAATGCCCGCTGCATCGATTTGCAGCAGCTTTGCATCTC 388
consensus_9311#2      TACA--AGNCAAGTCGGT-AGNCGTGGACGC-GAATCAGGCTA-AGTTGGCCCGCTAGTC 363
                        *   **   *  ** * **   **  *** * ***    *  **  *    **   **

consensus_9311#0      GCCCGGAAAGCTGGTATGG-TGTT-TGTACTGCGATTTAGTATGTCTGGATCATGACGGA 532
consensus_9311#1      GCCCGGAAAGCTGGTATGG-TGTT-TGTACTGCGATTTANTATGTCTGGATCATGACGGA 456
consensus_9311#3      GCCCGGAAAGCTGGTATGG-TGTAATGTACTGCGATTTAGTATGTCTGGATCATGACGGA 447
consensus_9311#2      ATCTGAATTTGTAGCAGAGACACACTATANAGCATCTTCNGAC-CCCGGANCACGTCTGG 422
                        * * *    * * *  *      * **  **   **   *   * *** ** * * * 

consensus_9311#0      TGCGTCTTAGATGCTGCTATAATAGCACTCGT-AGCCGCCTTCCACACAGTTAAACTTC- 590
consensus_9311#1      TGCGTCTTAGATGCTGCTATAATAGCACTCGT-AGCCGCCTTCCACACAGTTAAACTTC- 514
consensus_9311#3      TGCGTCTTAGATGCTGCTATAATAGCACTCGNTAGCCGCCTTCCACACAGTTAAACTTC- 506
consensus_9311#2      TACTGAGTAGTTGCTGGACATATGGCGAGTTTAGGATACATTGTCTTGGGATCAATTGGA 482
                      * *    *** *****     ** **        *   * **       * * ** *   

consensus_9311#0      -CGACCATT-CAATACAATAGTGAC-ACAGAGGAAACGGAAGCAGACACATCCAGGCTTT 647
consensus_9311#1      -CGACCATT-CAATACAATAGTGAC-ACAGAGGAAACGGAAGCAGACACATCCAGGCTTT 571
consensus_9311#3      -CGACCATT-CAATA--------------------------------------------- 519
consensus_9311#2      ACGGGAATAGCAAGTCTNTANAGATTGCCTTGTTAATTAATTAAGGCACTTCTCGATTAG 542
                       **   **  ***                                               

consensus_9311#0      TGCCGTTGACGG-TTGACTGTGTGCCTGTAACGACCTCGTTCGTGATGGTTGCTGG---- 702
consensus_9311#1      TGCCGTTGACNGGTTGACTGTGTGCCTGTAACGACCTCGTTCGTGATGGTTGCTGGATAT 631
consensus_9311#3      ------------------------------------------------------------
consensus_9311#2      GCCCGNTCTTNTCCCAACAGCACANTTCACACAATCT-ATCCGAAACATTTCCANN---- 597
                                                                                  

consensus_9311#0      -----------------CCGCTTGATCGCGGATCCGACCACCGAAGAAGAAAAACTTGCG 745
consensus_9311#1      CATCTATCATCTTCCAGCCGCTTGATCGCGGATCCGACCACCGAAGAANAAAA-CTTGCG 690
consensus_9311#3      ------------------------------------------------------------
consensus_9311#2      -----------------TACAATATTAACGAGTNGAACAACAGAA--------------- 625
                                                                                  

consensus_9311#0      AGCACGACCTTAACGGTAACGGTAAGCGATGGCAAGATGAGCTTTTTCAACCAGTCCGGT 805
consensus_9311#1      AGCACGACCTTAACGGTAACGGTNAGCGATGGCAAGATGAGC------------------ 732
consensus_9311#3      ------------------------------------------------------------
consensus_9311#2      ------------------------------------------------------------
                                                                                  

consensus_9311#0      GGCGATCCAATGGACAGCAGAACGCTTAAAAAGTGCACCGACAGTGCAATAAAACGCGAA 865
consensus_9311#1      ------------------------------------------------------------
consensus_9311#3      ------------------------------------------------------------
consensus_9311#2      ------------------------------------------------------------
                                                                                  

consensus_9311#0      CGGTCCGTGAAAAAGATGATTCAAACCATGCAAAGAAAATCATCCAGCTGAACGCAAATG 925
consensus_9311#1      ------------------------------------------------------------
consensus_9311#3      ------------------------------------------------------------
consensus_9311#2      ------------------------------------------------------------
                                                                                  

consensus_9311#0      AAAATAAAACGATTAAGAATTGAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCG 985
consensus_9311#1      ------------------------------------------------------------
consensus_9311#3      ------------------------------------------------------------
consensus_9311#2      ------------------------------------------------------------
                                                                                  

consensus_9311#0      AGCTG 990
consensus_9311#1      -----
consensus_9311#3      -----
consensus_9311#2      -----