cluster # 933

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Anopheles gambiae
cluster # 933 cluster # 933 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_933#0 length = 774 sequences # 1

consensus_933#1 length = 610 sequences # 1

consensusID : consensus_933#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 774
fasta sequence

                              [TGATTCCTGCTTCAGCAGCAGCAGCCGTTTTTTCTCACTCTCGACACAGAACGCAAGCAAAAATGTCCGCCTCAGGTCCAACCTCGTTGATATCGACGGGCGGTGATGAATCGTTTGATTTTCTGTTCAAAATCGTCCTCATCGGAGACTGTGGCACCGGCAAGACCTGCATCGTGCAGCGGTTCAAATCGGGCAACTTTATCGAAAGCCACGGCAACACGATCGGGGTCGACTTTTCGATGAAAGCGGTCTCGGTGGATGGGAAGAAGGTGAAGCTACAGATATGGGACACGGCCGGGCAGGAACGGTTCCGGACCATCACGCAGAGCTATTACCGATCGGCTAACGGTGTTTTAATTGTGTACGACATCACCAAACGATCTACCTTCCTCAGCCTGCAGCGATGGATCGACGAGGTGCGCCGGTATACCGCCTCCAATGTGATGATCTTCGTGATAGGCAACAAATCCGACCTGGACGAGGAGCGGGAGGTGGAGTTTTCCGAAGCCGAAAACCTGTGCCAGTACATCCCGGAGGTGATGTTCGTGATGGAAACGTCCGCCAAAGACAATCGCTGCGTGGACGACGCATTCATGACGCTAGCAACGGAACTGAAGCGGCGCCACGATGGCTTGAATGCGGCCGAAGAGGAGGAAGGCATCACGCTCGGTCAGAGCAAAAGCTTATCAACCAATACGTGCAACTCGCTGTGCAATTTAACGTGAAGTGGTGCACCGAGCGTAGTAGCTACTGCTGATGATACCTGGCCAAAGC]

[+] EMBL BX608621             [TGATTCCTGCTTCAGCAGCAGCAGCCGTTTTTTCTCACTCTCGACACAGAACGCAAGCAAAAATGTCCGCCTCAGGTCCAACCTCGTTGATATCGACGGGCGGTGATGAATCGTTTGATTTTCTGTTCAAAATCGTCCTCATCGGAGACTGTGGCACCGGCAAGACCTGCATCGTGCAGCGGTTCAAATCGGGCAACTTTATCGAAAGCCACGGCAACACGATCGGGGTCGACTTTTCGATGAAAGCGGTCTCGGTGGATGGGAAGAAGGTGAAGCTACAGATATGGGACACGGCCGGGCAGGAACGGTTCCGGACCATCACGCAGAGCTATTACCGATCGGCTAACGGTGTTTTAATTGTGTACGACATCACCAAACGATCTACCTTCCTCAGCCTGCAGCGATGGATCGACGAGGTGCGCCGGTATACCGCCTCCAATGTGATGATCTTCGTGATAGGCAACAAATCCGACCTGGACGAGGAGCGGGAGGTGGAGTTTTCCGAAGCCGAAAACCTGTGCCAGTACATCCCGGAGGTGATGTTCGTGATGGAAACGTCCGCCAAAGACAATCGCTGCGTGGACGACGCATTCATGACGCTAGCAACGGAACTGAAGCGGCGCCACGATGGCTTGAATGCGGCCGAAGAGGAGGAAGGCATCACGCTCGGTCAGAGCAAAAGCTTATCAACCAATACGTGCAACTCGCTGTGCAATTTAACGTGAAGTGGTGCACCGAGCGTAGTAGCTACTGCTGATGATACCTGGCCAAAGC]




>consensus_933#0
TGATTCCTGCTTCAGCAGCAGCAGCCGTTTTTTCTCACTCTCGACACAGAACGCAAGCAA
AAATGTCCGCCTCAGGTCCAACCTCGTTGATATCGACGGGCGGTGATGAATCGTTTGATT
TTCTGTTCAAAATCGTCCTCATCGGAGACTGTGGCACCGGCAAGACCTGCATCGTGCAGC
GGTTCAAATCGGGCAACTTTATCGAAAGCCACGGCAACACGATCGGGGTCGACTTTTCGA
TGAAAGCGGTCTCGGTGGATGGGAAGAAGGTGAAGCTACAGATATGGGACACGGCCGGGC
AGGAACGGTTCCGGACCATCACGCAGAGCTATTACCGATCGGCTAACGGTGTTTTAATTG
TGTACGACATCACCAAACGATCTACCTTCCTCAGCCTGCAGCGATGGATCGACGAGGTGC
GCCGGTATACCGCCTCCAATGTGATGATCTTCGTGATAGGCAACAAATCCGACCTGGACG
AGGAGCGGGAGGTGGAGTTTTCCGAAGCCGAAAACCTGTGCCAGTACATCCCGGAGGTGA
TGTTCGTGATGGAAACGTCCGCCAAAGACAATCGCTGCGTGGACGACGCATTCATGACGC
TAGCAACGGAACTGAAGCGGCGCCACGATGGCTTGAATGCGGCCGAAGAGGAGGAAGGCA
TCACGCTCGGTCAGAGCAAAAGCTTATCAACCAATACGTGCAACTCGCTGTGCAATTTAA
CGTGAAGTGGTGCACCGAGCGTAGTAGCTACTGCTGATGATACCTGGCCAAAGC

consensusID : consensus_933#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 610
fasta sequence

                              [GAGGCAGAATCCCGCACGAGTGTAGAAAAACAAGCAGCAGCAGCGCGTTTTTGCGAGTGTTACTTTACGGAGTTAATTATTAATTAGAATTTGGTGATTCGTGCTTCAGCAGCAGCAGCCGTTTTTTCTCACTCTCGACACAGAACGCAAGCAAAAATGTCCGCCTCAGGTCCAACCTCGTTGATATCGACGGGCGGTGATGATCTTCGTGATAGGCAACAAATCCGACCTGGACGAGGAGCGGGAGGTGGAGTTTTCCGAAGCCGAAAACCTGTGCCAGTACATCCCGGAGGTGATGTTCGTGATGGAAACGTCCGCCAAAGACAATCGCTGCGTGGACGACGCATTCATGACGCTAGCAACGGAACTGAAGCGGCGCCACGATGGCTTGAATGCGGCCGAAGAGGAGGAAGGCATCACGCTCGGTCAGAGCAAAAGCTTATCAAGCCAATACGTGCAACTCGCTGTGCAATTTAACGTGAAGTGGTGCACCGAGCGTAGGTAGCTACTGCTGATGATACCTGGCCAAAGCGTAAAAGGACCATTTGCGAACGCGACTGTTGGACAGTTCTAATTNGTGAACGACTTATTGCCCTCTCCCCATTTATTG]

[+] EMBL BX468228             [GAGGCAGAATCCCGCACGAGTGTAGAAAAACAAGCAGCAGCAGCGCGTTTTTGCGAGTGTTACTTTACGGAGTTAATTATTAATTAGAATTTGGTGATTCGTGCTTCAGCAGCAGCAGCCGTTTTTTCTCACTCTCGACACAGAACGCAAGCAAAAATGTCCGCCTCAGGTCCAACCTCGTTGATATCGACGGGCGGTGATGATCTTCGTGATAGGCAACAAATCCGACCTGGACGAGGAGCGGGAGGTGGAGTTTTCCGAAGCCGAAAACCTGTGCCAGTACATCCCGGAGGTGATGTTCGTGATGGAAACGTCCGCCAAAGACAATCGCTGCGTGGACGACGCATTCATGACGCTAGCAACGGAACTGAAGCGGCGCCACGATGGCTTGAATGCGGCCGAAGAGGAGGAAGGCATCACGCTCGGTCAGAGCAAAAGCTTATCAAGCCAATACGTGCAACTCGCTGTGCAATTTAACGTGAAGTGGTGCACCGAGCGTAGGTAGCTACTGCTGATGATACCTGGCCAAAGCGTAAAAGGACCATTTGCGAACGCGACTGTTGGACAGTTCTAATTNGTGAACGACTTATTGCCCTCTCCCCATTTATTG]




>consensus_933#1
GAGGCAGAATCCCGCACGAGTGTAGAAAAACAAGCAGCAGCAGCGCGTTTTTGCGAGTGT
TACTTTACGGAGTTAATTATTAATTAGAATTTGGTGATTCGTGCTTCAGCAGCAGCAGCC
GTTTTTTCTCACTCTCGACACAGAACGCAAGCAAAAATGTCCGCCTCAGGTCCAACCTCG
TTGATATCGACGGGCGGTGATGATCTTCGTGATAGGCAACAAATCCGACCTGGACGAGGA
GCGGGAGGTGGAGTTTTCCGAAGCCGAAAACCTGTGCCAGTACATCCCGGAGGTGATGTT
CGTGATGGAAACGTCCGCCAAAGACAATCGCTGCGTGGACGACGCATTCATGACGCTAGC
AACGGAACTGAAGCGGCGCCACGATGGCTTGAATGCGGCCGAAGAGGAGGAAGGCATCAC
GCTCGGTCAGAGCAAAAGCTTATCAAGCCAATACGTGCAACTCGCTGTGCAATTTAACGT
GAAGTGGTGCACCGAGCGTAGGTAGCTACTGCTGATGATACCTGGCCAAAGCGTAAAAGG
ACCATTTGCGAACGCGACTGTTGGACAGTTCTAATTNGTGAACGACTTATTGCCCTCTCC
CCATTTATTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_933#0      TGATTCCTGCTTCAGCAGCAGCAGCCGTTTTTTCTCACTCTCGACACAGAACGCAAGCAA 60
consensus_933#1      ------------------------------------------------------------
                                                                                 

consensus_933#0      AAATGTCCGCCTCAGGTCCAACCTCGTTGATATCGACGGGCGGTGATGAATCGTTTGATT 120
consensus_933#1      ------------------------------------------------------------
                                                                                 

consensus_933#0      TTCTGTTCAAAATCGTCCTCATCGGAGACTGTGGCACCGGCAAGACCTGCATCGTGCAGC 180
consensus_933#1      ------------------------------------------------------------
                                                                                 

consensus_933#0      GGTTCAAATCGGGCAACTTTATCGAAAGCCACGGCAACACGATCGGGGTCGACTTTTCGA 240
consensus_933#1      ------------------------------------------------------------
                                                                                 

consensus_933#0      TGAAAGCGGTCTCGGTGGATGGGAAGAAGGTGAAGCTACAGATATGGGACACGGCCGGGC 300
consensus_933#1      ----------------------GAGGCAGAATCCCGCACGAGTGTAGAAAAACAAGCAGC 38
                                           ** * **        **   * * * * *       **

consensus_933#0      AGGAACGG---TTCCGGACCATCACGCAGAGCTATTACCGATCGGCTAACGGTGTTTTAA 357
consensus_933#1      AGCAGCGCGTTTTTGCGAGTGTTACTTTACGGAGTTAATTATTAATTAGAATTTGGTGAT 98
                     ** * **    **   **   * **     *   ***   **    **    *   * * 

consensus_933#0      TTGTG-TACGACATCACCAAACGATCTACCTTCCTCAGCCTGCAGCGATGGATCGACGAG 416
consensus_933#1      TCGTGCTTCAGCAGCAGCAGCCGTTTTTTCTCACTCTCGACACAGAACGCAAGCAAAAAT 158
                     * *** * *  ** ** **  ** * *  **  ***      ***      * * *  * 

consensus_933#0      GTGCGCC---GGTATACCGCCTCCAAT-----------GTGATGATCTTCGTGATAGGCA 462
consensus_933#1      GTCCGCCTCAGGTCCAACCTCGTTGATATCGACGGGCGGTGATGATCTTCGTGATAGGCA 218
                     ** ****   ***  * *  *    **           **********************

consensus_933#0      ACAAATCCGACCTGGACGAGGAGCGGGAGGTGGAGTTTTCCGAAGCCGAAAACCTGTGCC 522
consensus_933#1      ACAAATCCGACCTGGACGAGGAGCGGGAGGTGGAGTTTTCCGAAGCCGAAAACCTGTGCC 278
                     ************************************************************

consensus_933#0      AGTACATCCCGGAGGTGATGTTCGTGATGGAAACGTCCGCCAAAGACAATCGCTGCGTGG 582
consensus_933#1      AGTACATCCCGGAGGTGATGTTCGTGATGGAAACGTCCGCCAAAGACAATCGCTGCGTGG 338
                     ************************************************************

consensus_933#0      ACGACGCATTCATGACGCTAGCAACGGAACTGAAGCGGCGCCACGATGGCTTGAATGCGG 642
consensus_933#1      ACGACGCATTCATGACGCTAGCAACGGAACTGAAGCGGCGCCACGATGGCTTGAATGCGG 398
                     ************************************************************

consensus_933#0      CCGAAGAGGAGGAAGGCATCACGCTCGGTCAGAGCAAAAGCTTATCAA-CCAATACGTGC 701
consensus_933#1      CCGAAGAGGAGGAAGGCATCACGCTCGGTCAGAGCAAAAGCTTATCAAGCCAATACGTGC 458
                     ************************************************ ***********

consensus_933#0      AACTCGCTGTGCAATTTAACGTGAAGTGGTGCACCGAGCGTAG-TAGCTACTGCTGATGA 760
consensus_933#1      AACTCGCTGTGCAATTTAACGTGAAGTGGTGCACCGAGCGTAGGTAGCTACTGCTGATGA 518
                     ******************************************* ****************

consensus_933#0      TACCTGGCCAAAGC---------------------------------------------- 774
consensus_933#1      TACCTGGCCAAAGCGTAAAAGGACCATTTGCGAACGCGACTGTTGGACAGTTCTAATTNG 578
                     **************                                              

consensus_933#0      --------------------------------
consensus_933#1      TGAACGACTTATTGCCCTCTCCCCATTTATTG 610