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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9330#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 968 fasta sequence
[TGTGGTGTCGGCGGTGTGATCGGTAATGGAGTGCAAACATTAAAGAAGTTGGGTTTTCGGAGCAAAATCCTTGTCTAAACACCAGCATTTCTAGTTCCTTTACGTGTGAAAGCACACATCTAGACAGAAATGGTTTCAGTTTTAGTGCACAAACTTCCAGCGATGCTGATCGTTGCCGTTTTGCTGATCTCTGGAGCCACAAACGTACGAACTGCACGCGCACGTCCCGGACGAGAAGGTGAAATCGTCCTGCCTGGCCCTGTGCACATGCCAAATGAACTCACGGCGGGCCGTTGCCGAATTCCACTGCGCCCACATCGACTGTCCCGAGTTCCTGTCGCCACACCGGGCCGGCTGTGTGCGCCAGTACCGCACGAACGATTGCTGCTCGTCCCGGCAGGCGTGCGGCGAGAAGCGCACCAATCTGCCCCGCCGTACGGTGGGCGCCGTGACGTACTACGAGGGCGAACGGATGCAGCTGCCGGACGACCCGTGCCAGACGTGCATCTGCACGCAGCATTTCAACGCGAGCGACCCGCACGGCCACACGAAATGCTACACGAACGCGTGTGCGTTCGAGCTGATAGCGCCGTCGGTGCTGGCGCACGGTGCAGCCCCGGTGTACTACGGCAATCGGTGCTGCCCGTGGGAGTGGCGACTGCCAAAAGCAAACGATCGTATCCGGCGGGACGAGGGAACGGAGAGCTCAAACGCTTTGGAAGGGAGGACGGTTCGAGACAGCTGCACGTACGGTAACTTGTCGCTAAGCATAGGGGAGTCACTGGTAGCGGATGTGACGCCGGTCGGCATTTACCAGTGCTTCTGTGCCATCCCCCCGATGGTCCACTGTACCTTAACGGCAAACTGACGCGCGAGGAGCGTGATACGCGAATGTACTTCATGTTGAGCGTGATATGTGACATTTATTACAATTATTACTGAATAAAAAGCTTTAAAAC--GAAAAAAAA]
[+] EMBL CNS09INT [TGTGGTGTCGGCGGTGTGATCGGTAATGGAGTGCAAACATTAAAGAAGTTGGGTTTTCGGAGCAAAATCCTTGTCTAAACACCAGCATTTCTAGTTCCTTTACGTGTGAAAGCACACATCTAGACAGAAATGGTTTCAGTTTTAGTGCACAAACTTCCAGCGATGCTGATCGTTGCCGTTTTGCTGATCTCTGGAGCCACAAACGTACGAACTGCACGCGCACGTCCCGGACGAGAAGGTGAAATCGTCCTGCCTGGCCCTGTGCACATGCCAAATGAACTCACGGCGGGCCGTTGCCGAATTCCACTGCGCCCACATCGACTGTCCCGAGTTCCTGTCGCCACACCGGGCCGGCTGTGTGCGCCAGTACCGCACGAACGATTGCTGCTCGTCCCGGCAGGCGTGCGGCGAGAAGCGCACCAATCTGCCCCGCCGTACGGTGGGCGCCGTGACGTACTACGAGGGCGAACGGATGCAGCTGCCGGACGACCCGTGCCAGACGTGCATCTGCACGCAGCATTTCAACGCGAGCGACCCGCACGGCCACACGAAATGCTACACGAACGCGTGTGCGTTCGAGCTGATAGCGCCGTCGGTGCTGGCGCACGGTGCAGCCCCGGTGTACTACGGCAATCGGTGCTGCCCGTGGGAGTGGCGACTGCCAAAAGCAAACGATCGTATCCGGCGGGACGAGGGAACGGAGAGCTCAAACGCTTTGGAAGGGAGGACGGTTCGAGACAGCTGCACGTACGGTAACTTGTCGCTAAGCATAGGGGAGTCACTGGTAGCGGATGTGACGCCGGTCGGCATTTACCAGTGCTTCTGTGCCATCCCCCCGATGGTCCACTGTACCTTAACGGCAAACTGACGCGCGAGGAGCGTGATACGCGAATGTACTTCATGTTGAGCGTGATATGTGACATTTATTACAATTATTACTGAATAAAAAGCTTTAAAAa ]
[+] EMBL CNS09QBL [ TGATCGGTAATGGAGTGCAAACATTAAAGAAGTTGGGTTTTCGGAGCAAAATCCTTGTCTAAACACCAGCATTTCTAGTTCCTTTACGTGTGAAAGCACACATCTAGACAGAAATGGTTTCAGTTTTAGTGCACAAACTTCCAGCGATGCTGATCGTTGCCGTTTTGCTGATCTCTGGAGCCACAAACGTACGAACTGCACGCGCACGTCCCGGACGAGAAGGTGAAATCGTCCTGCCTGGCCCTGTGCACATGCCAAATGAACTCACGGCGGGCCGTTGCCGAATTCCACTGCGCCCACATCGACTGTCCCGAGTTCCTGTCGCCACACCGGGCCGGCTGTGTGCGCCAGTACCGCACGAACGATTGCTGCTCGTCCCGGCAGGCGTGCGGCGAGAAGCGCACCAATCTGCCCCGCCGTACGGTGGGCGCCGTGACGTACTACGAGGGCGAACGGATGCAGCTGCCGGACGACCCGTGCCAGACGTGCATCTGCACGCAGCATTTCAACGCGAGCGACCCGCACGGCCACACGAAATGCTACACGAACGCGTGTGCGTTCGAGCTGATAGCGCCGTCGGTGCTGGCGCACGGTGCAGCCCCGGTGTACTACGGCAATCGGTGCTGCCCGTGGGAGTGGCGACTGCCAAAAGCAAACGATCGTATCCGGCGGGACGAGGGAACGGAGAGCTCAAACGCTTTGGAAGGGAGGACGGTTCGAGACAGCTGCACGTACGGTAACTTGTCGCTAAGCATAGGGGAGTCACTGGTAGCGGATGTGACGCCGGTCGGCATTTACCAGTGCTTCTGTGCCATCCCCCCGATGGTCCACTGTACCTTAACGGCAAACTGACGCGCGAGGAGCGTGATACGCGAATGTACTTCATGTTGAGCGTGATATGTGACATTTATTACAATTATTACTGAA ]
[+] EMBL CNS09PKE [ AGTGCAAACATTAAAGAAGTTGGGTTTTCGGAGCAAAATCCTTGTCTAAACACCAGCATTTCTAGTTCCTTTACGTGTGAAAGCACACATCTAGACAGAAATGGTTTCAGTTTTAGTGCACAAACTTCCAGCGATGCTGATCGTTGCCGTTTTGCTGATCTCTGGAGCCACAAACGTACGAACTGCACGCGCACGTCCCGGACGAGAAGGTGAAATCGTCCTGCCTGGCCCTGTGCACATGCCAAATGAACTCACGGCGGGCCGTTGCCGAATTCCACTGCGCCCACATCGACTGTCCCGAGTTCCTGTCGCCACACCGGGCCGGCTGTGTGCGCCAGTACCGCACGAACGATTGCTGCTCGTCCCGGCAGGCGTGCGGCGAGAAGCGCACCAATCTGCCCCGCCGTACGGTGGGCGCCGTGACGTACTACGAGGGCGAACGGATGCAGCTGCCGGACGACCCGTGCCAGACGTGCATCTGCACGCAGCATTTCAACGCGAGCGACCCGCACGGCCACACGAAATGCTACACGAACGCGTGTGCGTTCGAGCTGATAGCGCCGTCGGTGCTGGCGCACGGTGCAGCCCCGGTGTACTACGGCAATCGGTGCTGCCCGTGGGAGTGGCGACTGCCAAAAGCAAACGATCGTATCCGGCGGGACGAGGGAACGGAGAGCTCAAACGCTTTGGAAGGGAGGACGGTTCGAGACAGCTGCACGTACGGTAACTTGTCGCTAAGCATAGGGGAGTCACTGGTAGCGGATGTGACGCCGGTCGGCATTTACCAGTGCTTCTGTGCCATCCCCCCGATGGTCCACTGTACCTTAACGGCAAACTGACGCGCGAGGAGCGTGATACGCGAATTTACT ]
[-] EMBL CNS09QBM [ TCGGAGCAAAATCCTTGTCTAAACACCAGCATTTCTAGTTCCTTTACGTGTGAAAGCACACATCTAGACAGAAATGGTTTCAGTTTTAGTGCACAAACTTCCAGCGATGCTGATCGTTGCCGTTTTGCTGATCTCTGGAGCCACAAACGTACGAACTGCACGCGCACGTCCCGGACGAGAAGGTGAAATCGTCCTGCCTGGCCCTGTGCACATGCCAAATGAACTCACGGCGGGCCGTTGCCGAATTCCACTGCGCCCACATCGACTGTCCCGAGTTCCTGTCGCCACACCGGGCCGGCTGTGTGCGCCAGTACCGCACGAACGATTGCTGCTCGTCCCGGCAGGCGTGCGGCGAGAAGCGCACCAATCTGCCCCGCCGTACGGTGGGCGCCGTGACGTACTACGAGGGCGAACGGATGCAGCTGCCGGACGACCCGTGCCAGACGTGCATCTGCACGCAGCATTTCAACGCGAGCGACCCGCACGGCCACACGAAATGCTACACGAACGCGTGTGCGTTCGAGCTGATAGCGCCGTCGG G TGGCGCACGGTGCAGCCCCGGTGTACTACGGCAATCGGTGCTGCCCGTGGGAGTGGCGACTGCCAAAAGCAAACGATCGTATCCGGCGGGACGAGGGAACGGAGAGCTCAAACGCTTTGGAAGGGAGGACGGTTCGAGACAGCTGCACGTACGGTAACTTGTCGCTAAGCATAGGGGAGTCACTGGTAGCGGATGTGACGCCGGTCGGCATTTACCAGTGCTTCTGTGCCATCCCCCCGATGGTCCACTGTACCTTAACGGCAAACTGACGCGCGAGGAGCGTGATACGCGAATGTACTTCATGTTGAGCGTGATATGTGACATTTATTACAATTATTACTGAAT ]
[-] EMBL CNS09INU [ ACACATCTAGACAGAAATGGTTTCAGTTTTAGTGCACAAACTTCCAGCGATGCTGATCGTTGCCGTTTTGCTGATTTCTGGAGCCACAAACGTACGAACTGAACGCGCACGTCCCGGACGAGAAGGTGAAATCGTCCTGCCTGGCCCTGTGAACATGCCAAATGAACTCACGGCGGGCCGTTGCCGAATTCCACTGCGCCCACATCGACTGTCCCGAGTTCCTGTCGCCACACCGGGCCGGCTGTGTGCGCCAGTACCGCACGAACGATTGCTGCTCGTCCCGGCAGGCGTGCGGCGAGAAGCGCACCAATCTGCCCCGCCGTACGGTGGGCGCCGTGACGTACTACGAGGGCGAACGGATGCAGCTGCCGGACGACCCGTGCCAGACGTGCATCTGCACGCAGCATTTCAACGCGAGCGACCCGCACGGCCACACGAAATGCTACACGAACGCGTGTGCGTTCGAGCTGATAGCGCCGTCGG G TGGCGCACGGTGCAGCCCCGGTGTACTACGGCAATCGGTGCTGCCCGTGGGAGTGGCGACTGCCAAAAGCAAACGATCGTATCCGGCGGGACGAGGGAACGGAGAGCTCAAACGCTTTGGAAGGGAGGACGGTTCGAGACAGCTGCACGTACGGTAACTTGTCGCTAAGCATAGGGGAGTCACTGGTAGCGGATGTGACGCCGGTCGGCATTTACCAGTGCTTCTGTGCCATCCCCCCGATGGTCCACTGTACCTTAACGGCAAACTGACGCGCGAGGAGCGTGATACGCGAATGTACTTCATGTTGAGCGTGATATGTGACATTTATTACAATTATTACTGAATAAAAAGCTCAAAAAC GAA ]
[-] EMBL CNS09PKF [ GTTTCAGTTTTAGTGCACAAACTTCCAGCGATGCTGATCGTTGCCGTTTTGCTGATTTCTGGAGCCACAAACGTACGAACTGGACGCGCACGTCCCGGACGAGAAGGTGAAATCGTCCTGCCTGGCCCTGTGAACATGCCAAATGAACTCACGGCGGGCCGTTGCCGAATTCCACTGCGCCCACATCAACTGTCCCGAGTTCCTGTCGCCACACCGGGCCGGCTGTGTGCGCCAGTACCGCACGAACGATTGCTGCTCGTCCCGGCAGGCGTGCGGCGAGAAGCGCACCAATCTGCCCCGCCGTACGGTGGGCGCCGTGACGTACTACGAGGGCGAACGGATGCAGCTGCCGGACGACCCGTGCCAGACGTGCATCTGCACGCAGCATTTCAACGCGAGCGACCCGCACGGCCACACGAAATGCTACACGAACGCGTGTGCGTTCGAGCTGATAGCG ]
[-] EMBL AGA280857 [ GTGCGTTCGAGCTGATAGCGCCTTCGGTGCTGGCGCACGGTGCGGCCCCGGTGTACTACGGCAATCGATGCTGCCCGTGGGAGTGGCGACTGCCAAAAGCAAACGATCGTATCCGGCGGGACGAGGGAACGGAGAGCTCAAACGCTTTGGAAGAGTGGACGGTTCGAGATAGCTGCACGTACGGTAACTTGACGATGAGCATAGGAGAGTCACTGGTAGCGGATGTGACGCCGGTCGGCATTTACCAGTGCTTCTGTGCCATCCCCCCGATGGTCCACTGTACCTTAACGGCAAACTGACGCGCGAGGAGCGTGATACGCGAATGTACTTCATGTTGAGCGTGATATGTGACATTTATTACAATTATTACTGAATAAAAAGCTTTAAAACCGGAAAAAAAA]
consensusID : consensus_9330#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 957 fasta sequence
[ATCGGCACCAGGGCTTGCCGTCTCTCTCGACGTGTCTGTCGTGTCGGCGGTGTGATCGGTAATGGAGTGCAAACATTAAAGAAGTTGGGTTTTCGGAGCAAAATCCTTGTCTAAACACCAGCAATTCTAGTTCCTTTACGTGTGAAAGCATACATCTAGACAGAAATGGTTTCAGTTTTAGTGCACAAACTTCCAGCGATGCTGATCGTTGCCGTTTTGCTGATCTCTGGAGCCACAAACGCTTTGGGCCGATGTCCAGTGCCCACCAAACACTACACGACCCTCGGGTGCGAACCGGCGGCCGAGCAAAACGCACA-GGGCTGCCCACTATGGTTCAACTGTTCGATGCTGGAACAGCGCGCCCATGATAAGTGTTATCTGTTCGGCAAAACGTACGAACTGCACGCGCACGTCCCGGACGAGAAGGTGAAATCGTCCTGCCTGGCCCTGTGCACATGCCAAATGAACTCACGGCGCGCCGTTGCCGAGTTCCACTGCGCCCACATCGACTGTCCCGAGTTCCTGTCGCCACACCGGGCCGGCTGTGTGCGCCAGTACCGCACGAACGATTGCTGCTCGTCCCGGCAGGCGTGCGGCGAGAAGCGCACC-AATCTGC-CCCG-CTGTAC-GGTGGGCGCGGTGACGTACTACGAGGGCGAACGGA-TGCAGC-TG-CC-GGACGACCCGTGCC-AGACG-TGCA-TCTGTACG--CAG-CATTTCAAC-GCGAGCGACCCGCACGGCC-ACAC-GAAATGCT--ACACGAACGCGTGTGCGTTCGAGCTGATAGCGCCGTCGGTGCTGGCGCACGGTGCGGCCCCGGTGTACTACGGCAATCGATGCTGCCCGTGGGAGTGGCGACTGCCAAAAGCAAACGATCGTATCCGGCGGGACGAGGGAACGGAGAGCTCAAACGCTTTGGAAGAGTGGACGGTTCGAGATAGCTGCACGTACGGTAACTTGACGATGAGC]
[+] EMBL BX466429 [ATCGGCACCAGGGCTTGCCGTCTCTCTCGACGTGTCTGTCGTGTCGGCGGTGTGATCGGTAATGGAGTGCAAACATTAAAGAAGTTGGGTTTTCGGAGCAAAATCCTTGTCTAAACACCAGCATTTCTAGTTCCTTTACGTGTGAAAGCACACATCTAGACAGAAATGGTTTCAGTTTTAGTGCACAAACTTCCAGCGATGCTGATCGTTGCCGTTTTGCTGATCTCAGGAGCCACAAACGCTTTGGGCCGATGTCCAGTGCCCACCAAACACTACACGACCCTCGGGTGCGAACCGGCGGCCGAGCAAGACGCACAGGGGCTGCCCACTATGGTTCAACTGTTCGATGCTGGAACAGCGCGCCCATGATAAGTGTTATCTGTTCGGCAAAACGTACGAACTGCACGCGCACGTCCCGGACGAGAAGGTGAAATCGTCCTGCCTGGCCCTGTGCACATGCCAAATGAACTCACGGCGCGCCGTTGCCGAATTCCACTGGGCCCACATCGACTGTCCGGAGTTCCTGTCGCCGCACCGGGCCGGCTGTGTGCGCCAGTACCGCACGAACGATTGCTGCTCGTCCCGGCAGGCGTGCGGCGAGAAGCGCACCGAATCTGCGCCCGTTTGTACGGGTGGGCGCGGTGACGTACTACGAGGGCGAACGGATTGCAGCTTGACCGGGACGACCCGTGCCAAGACGTTGCATTCTGGACGNNCAGACATTTCAACGGCGAGCGACCAGTAGGGCCAACACGGAAATGGTNCGCACGAACGgcg ]
[+] EMBL BX621834 [ CTCGACGTGTCTGTCGTGTCGGCGGTGTGATCGGTAATGGAGTGCATACATTAATGAAGTTG GGAGCAAAATCCTTGTCTTTAGACCAGCAATTCAAGTTCCTTTACGTGTGAAAGCATAAATCTAGACAGAAATGGTTTCAGTTTTAGTGCACAAACTTCCAGCGATGCTGATCGTTGCCGTTTTGCTGATCTCTGGAGCCACAAACGCTTTGGGCCGATGTCCAGTGCCCACCAAACACTACACGACCCTCGGGTGCGAACCGGCGGCCGAGCAAAACGCACA GGGCTGCCCACTATGGTTCAACTGTTCGATGCTGGAACAGCGCGCCCATGATAAGTGTTATCTGTTCGGCAAAACGTACGAACTGCACGCGCACGTCCCGGACGAGAAGGTGAAATCGTCCTGCCTGGCCCTGTGCACATGCCAAATGAACTCACGGCGCGCCGTTGCCGAGTTCCACTGCGCCCACATCGACTGTCCCGAGTTCCTGTCGCCACACCGGGCCGGCTGTGTGCGCCAGTACCGCACGAACGATTGCTGCTCGTCCCGGCAGGCGTGCGGCGAGAAGCGCACC AATCTGC CCCG CTGTAC GGTGGGCGCGGTGACGTACTACGAGGGCGAACGGA TGCAGC TG CC GGACGACCCGTGCC AGACG TGCA TCTGTACG CAG CATTTCAAC GCGAGCGACCCGCACGGGC ACAC GAAATGCT ACACGAACGCGTGTGCGTTCGAGCTGATAGCGCCGTCGGTGCTGGCGCACGGTGCGGCCCCGGTGTACTACGGCAATCGATGCTGCCCGTGGGAGTGGCGACTG ]
[+] EMBL BX620737 [ gagGGTAATGGAGTGCTAACATTAAAGAAGTTGGGTTTTCGGAGCAAAATCCTTGTCTAAACACCAGCATTTCTAGTTCCTTTACGTGTGAAAGCACACATCTAGACAGAAATGGTTTCAGTTTTAGTGCACAAACTTCCAGCGATGCTGATCGTTGCCGTTTTGCTGATCTCAGGAGCCACAAACGCTTTGGGCCGATGTCCAGTGCCCACCAAACACTACACGACCCTCGGGTGCGAACCGGCGGCCGAGCAAGACGCACA GGGCTGCCCACTATGGTTCAACTGTTCGATGCTGGAACAGCGCGCCCATGATAAGTGTTATCTGTTCGGCAAAACGTACGAACTGCACGCGCACGTCCCGGACGAGAAGGTGAAATCGTCCTGCCTGGCCCTGTGCACATGCCAAATGAACTCACGGCGCGCCGTTGCCGAATTCCACTGCGCCCACATCGACTGTCCGGAGTTCCTGTCGCCGCACCGGGCCGGCTGTGTGCGCCAGTACCGCACGAACGATTGCTGCTCGTCCCGGCAGGCGTGCGGCGAGAAGCGCACC AATCTGC CCCG TTGTAC GGTGGGCGCGGTGACGTACTACNAGGGCGAACGGA TGCAGC TG CC GGNCGACCCGTGCC AGACG TGCA TCTGCACG CAG CATTTCAAC ]
[+] EMBL BX602344 [ ACATTAATGAAGTTG GGAGCAAAATCCTTGTCTTTAGACCAGCAATTCAAGTTCCTTTACGTGTGAAAGCATAAATCTAGACAGAAATGGTTTCAGTTTTAGTGCACAAACTTCCAGCGATGCTGATCGTTGCCGTTTTGCTGATCTCTGGAGCCACAAACGCTTTGGGCCGATGTCCAGTGCCCACCAAACACTACACGACCCTCGGGTGCGAACCGGCGGCCGAGCAAAACGCACA GGGCTGCCCACTATGGTTCAACTGTTCGATGCTGGAACAGCGCGCCCATGATAAGTGTTATCTGTTCGGCAAAACGTACGAACTGCACGCGCACGTCCCGGACGAGAAGGTGAAATCGTCCTGCCTGGCCCTGTGCACATGCCAAATGAACTCACGGCGCGCCGTTGCCGAGTTCCACTGCGCCCACATCGACTGTCCCGAGTTCCTGTCGCCACACCGGGCCGGCTGTGTGCGCCAGTACCGCACGAACG ]
[+] EMBL BX622519 [ CAATTCTAGTTTCTTTGCGTGTGTAAGCATACATCTAGACAGAAATGGTTTCAGTTTTAGTGCACAAACTTCCAGCGATGCTGATCGTTGCCGTTTTGCTGATCTCTGGAGCCACAAACACTTTTGGCCGATGTCCAGTGCCCACCAAACACTACACGACCCTCGGGTGCGAACCGGCGGCCGAGCAAAACGCACA GGGCTGCCCACTATGGTTCAACTGTTCGATGCTGGAACAGCGCGCCCATGATAAGTGTTATCTGTTCGGCAAAACGTACGAACTGCACGCGCACGTCCCGGACGAGAAGGTGAAATCGTCCTGCCTGGCCCTGTGCACATGTCAAATGAACTCACGGCGCGCCGTTGCCGAGTTCCACTGCGCCCACATCGACTGTCCCGAGTTCCTGTCGCCGCATCGGGCCGGCTGTGTGCGCCAGTACCGCACGAACGATTGCTGCTCGTCCCGGCAGGCGTGCGGCGAGAAGCGCACC AATCTGC CCCG CTGTAC GGTGGGCGCGGTGACGTACTACGAGGGCGAACGGA TGCAGC TA CC GGACGACCCGTGCC AGACG TGCA TCTGTACG CAG CATTTCAAC GCGAGTGACCCGCACGGCC ACAC GAAATGCT ACACGAACGCGTGTGCGTTCGAGCTGATANCGCCGTCNGTGCTGGCGCACGGTGCGGCCCCGGTGTACTACGGGAATCG ]
[+] EMBL BX618552 [ ACGCACA GGGCTGCCCACTATGGTTCAACTGTTCGATGCTGGAACAGCGCGCCCATGATAAGTGTTATCTGTTCGGCAAAACGTACGAACTGCACGCGCACGTCCCGGACGAGAAGGTGAAATCGTCCTGCCTGGCCCTGTGCACATGCCAAATGAACTCACGGCGCGCCGTTGCCGAGTTCCACTGCGCCCACATCGACTGTCCCGAGTTCCTGTCGCCACACCGGGCCGGCTGTGTGCGCCAGTACCGCACGAACGATTGCTGCTCGTCCCGGCAGGCGTGCGGCGAGAAGCGCACC AATCTGC CCCG CTGTAC GGTGGGCGCGGTGACGTACTACGAGGGCGAACGGA TGCAGC TG CC GGACGACCCGTGCC AGACG TGCA TCTGTACG CAG CATTTCAAC GCGAGCGACCCGCACGGCC ACAC GAAATGCT ACACGAACGCGTGTGCGTTCGAGCTGATAGCGCCGTCGGTGCTGGCGCACGGTGCGGCCCCGGTGTACTACGGCAATCGATGCTGCCCGTGGGAGTGGCGACTGCCAAAAGCAAACGATCGTATCCGGCGGGACGAGGGAACGGAGAGCTCAAACGCTTTGGAAGAGTGGACGGTTCGAGATAGCTGCACGTACGGTAACTTGACGATGAGC]
[+] EMBL AGA282489 [ ATAAGTGTTATCTGTTCGGCAAAACGTACGAACTGCACGCGCACGTCCCGGACGAGAAGGTGAAATCGTCCTGCCTGGCCCTGTGCACATGCCAAATGAACTCACGGCGCGCCGTTGCCGAGTTCCACTGCGCCCACATCGACTGTCCCGAGTTCCTGTCGCCACACCGGGCCGGCTGTGTGCGCCAGTACCGCACGAACGATTGCTGCTCGTCCCGGCAGGCGTGCGGCGAGAAGCGCACC AATCTGC CCCG CTGTAC GGTGGGCGCGGTGACGTACTACGAGGGCGAACGGA TGCAGC TG CC GGACGACCCGTGCC AGACG TGCA TCTGTACG CAG CATTTCAAC GCGAGCGACCCGCACGGCC ACAC GAAATGCT ACACGAACGCGTGTGCGTTCGAGCTGATAGCGCCGTCGGTGCTGGCGCACGGTGCGGCCCCGGTGTACTACGGCAATCGATGCT ]
consensusID : consensus_9330#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence
[CCGAGGTTAGATGTGATCGGTAATGGAGTGCAAACTTAAAGAAGTTGGGAGCAAAATCCTTGCCTAAACACCAGCAATTCTAGTTTCTTTGCGTGTGTAAGCATACATCTAGACAGAAATGGTTTCAGTTTTAGTGCACAAACTTCCAGCGATGCTGATCGTTGCCGTTTTGCTGATCTCTGGAGCCACAAACACTTTTGGCCGATGTCCAGTGCCCACCAAACACTACACGACCCTCGGGTGCGAACCGGCGGCCGAGCAAAACGCACAGGGGCTGCCCACTATGGTTCAACTGTTCGATGCTGGAACAGCGCGCCCATGATAAGTGTTATCTGTTCGGCAAAACGTACGAACTGCACGCGCACGTCCCGGACGAGAAGGTGAAATCGTCCTGCCTGGCCCTGTGCACATGTCAAATGAACTCACGGCGCGCCGTTGCCGAGTTCCACTGCGCCCACATCGACTGTCCCGAGTTCCTGTCAGCGCATCGGGCCGGCTGTGTGCGCAGTACCGACGAACGATTGCTGCTCGTCCCGGCAGGCGTGCGGCGAGAAGGCGCACC]
[+] EMBL AL694701 [CCGAGGTTAGATGTGATCGGTAATGGAGTGCAAACTTAAAGAAGTTGGGAGCAAAATCCTTGCCTAAACACCAGCAATTCTAGTTTCTTTGCGTGTGTAAGCATACATCTAGACAGAAATGGTTTCAGTTTTAGTGCACAAACTTCCAGCGATGCTGATCGTTGCCGTTTTGCTGATCTCTGGAGCCACAAACACTTTTGGCCGATGTCCAGTGCCCACCAAACACTACACGACCCTCGGGTGCGAACCGGCGGCCGAGCAAAACGCACAGGGGCTGCCCACTATGGTTCAACTGTTCGATGCTGGAACAGCGCGCCCATGATAAGTGTTATCTGTTCGGCAAAACGTACGAACTGCACGCGCACGTCCCGGACGAGAAGGTGAAATCGTCCTGCCTGGCCCTGTGCACATGTCAAATGAACTCACGGCGCGCCGTTGCCGAGTTCCACTGCGCCCACATCGACTGTCCCGAGTTCCTGTCAGCGCATCGGGCCGGCTGTGTGCGCAGTACCGACGAACGATTGCTGCTCGTCCCGGCAGGCGTGCGGCGAGAAGGCGCACC]
consensusID : consensus_9330#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 480 fasta sequence
[GCAAGCCATCGGGTGCTAAGGCGGTAATGGAGTGCATACATTAATGAAGTTGGGAGCAAAATCCTTGTCTTTAGACCAGCAATTCAAGTTCCTTTACGTGTGAAAGCATAAATCTAGACAGAAATGGTTTCAGTTTTAGTGCACAAACTTCCAGCGATGCTGATCGTTGCCGTTTTGCTGATCTCTGGAGCCACAAACGCTTTGGGCCGATGTCCAGTGCCCACCAAACACTACACGACCCTCGGGTGCGAACCGGCGGCCGAGCAAAACGCACAGGGCTGCCCACTATGGTTCAACTGTTCGATGCTGGAACAGCGCGCCCATGATAAGTGTTATCTGTTCGGCAAAACGTACGAACTGCACGCGCACGTCCCGGACGAGAAGGTGAAATCGTCCTGCCTGGCCCTGTGCACATGCCAAATGAACTCACGGACGCGCCGTTAGCCGAGTTCCACATGGCGCCCACATCGACTGTCCCGA]
[+] EMBL BX469008 [GCAAGCCATCGGGTGCTAAGGCGGTAATGGAGTGCATACATTAATGAAGTTGGGAGCAAAATCCTTGTCTTTAGACCAGCAATTCAAGTTCCTTTACGTGTGAAAGCATAAATCTAGACAGAAATGGTTTCAGTTTTAGTGCACAAACTTCCAGCGATGCTGATCGTTGCCGTTTTGCTGATCTCTGGAGCCACAAACGCTTTGGGCCGATGTCCAGTGCCCACCAAACACTACACGACCCTCGGGTGCGAACCGGCGGCCGAGCAAAACGCACAGGGCTGCCCACTATGGTTCAACTGTTCGATGCTGGAACAGCGCGCCCATGATAAGTGTTATCTGTTCGGCAAAACGTACGAACTGCACGCGCACGTCCCGGACGAGAAGGTGAAATCGTCCTGCCTGGCCCTGTGCACATGCCAAATGAACTCACGGACGCGCCGTTAGCCGAGTTCCACATGGCGCCCACATCGACTGTCCCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9330#2 -----------------------------------CCGAG--GTTAGATGTGA--TCGGT 21
consensus_9330#3 -----------------------------------GCAAGCCATCGGGTGCTAAGGCGGT 25
consensus_9330#1 ATCGGCACCAGGGCTTGCCGTCTCTCTCGACGTGTCTGTCGTGTCGGCGGTGTGATCGGT 60
consensus_9330#0 ------------------------------------TGTGGTGTCGGCGGTGTGATCGGT 24
* * * ****
consensus_9330#2 AATGGAGTGCAAAC-TTAAAGAAGTTGGG-------AGCAAAATCCTTGCCTAAACACCA 73
consensus_9330#3 AATGGAGTGCATACATTAATGAAGTTGGG-------AGCAAAATCCTTGTCTTTAGACCA 78
consensus_9330#1 AATGGAGTGCAAACATTAAAGAAGTTGGGTTTTCGGAGCAAAATCCTTGTCTAAACACCA 120
consensus_9330#0 AATGGAGTGCAAACATTAAAGAAGTTGGGTTTTCGGAGCAAAATCCTTGTCTAAACACCA 84
*********** ** **** ********* ************* ** * ****
consensus_9330#2 GCAATTCTAGTTTCTTTGCGTGTGTAAGCATACATCTAGACAGAAATGGTTTCAGTTTTA 133
consensus_9330#3 GCAATTCAAGTTCCTTTACGTGTGAAAGCATAAATCTAGACAGAAATGGTTTCAGTTTTA 138
consensus_9330#1 GCAATTCTAGTTCCTTTACGTGTGAAAGCATACATCTAGACAGAAATGGTTTCAGTTTTA 180
consensus_9330#0 GCATTTCTAGTTCCTTTACGTGTGAAAGCACACATCTAGACAGAAATGGTTTCAGTTTTA 144
*** *** **** **** ****** ***** * ***************************
consensus_9330#2 GTGCACAAACTTCCAGCGATGCTGATCGTTGCCGTTTTGCTGATCTCTGGAGCCACAAAC 193
consensus_9330#3 GTGCACAAACTTCCAGCGATGCTGATCGTTGCCGTTTTGCTGATCTCTGGAGCCACAAAC 198
consensus_9330#1 GTGCACAAACTTCCAGCGATGCTGATCGTTGCCGTTTTGCTGATCTCTGGAGCCACAAAC 240
consensus_9330#0 GTGCACAAACTTCCAGCGATGCTGATCGTTGCCGTTTTGCTGATCTCTGGAGCCACAAAC 204
************************************************************
consensus_9330#2 ACTTTTGGCCGATGTCCAGTGCCCACCAAACACTACACGACCCTCGGGTGCGAACCGGCG 253
consensus_9330#3 GCTTTGGGCCGATGTCCAGTGCCCACCAAACACTACACGACCCTCGGGTGCGAACCGGCG 258
consensus_9330#1 GCTTTGGGCCGATGTCCAGTGCCCACCAAACACTACACGACCCTCGGGTGCGAACCGGCG 300
consensus_9330#0 GTACGAACTGCACGCGCACGTCCCGGACGAGAAGGTGAAATCGTCCTGCCTGGCCCTGTG 264
* * ** *** * * * * ** * * ** * *
consensus_9330#2 GCCGAGCAAAACGCACAGG-GGCTGCCCACTATGG--TTCAACTGT-------TCGA--- 300
consensus_9330#3 GCCGAGCAAAACGCACAGG-G-CTGCCCACTATGG--TTCAACTGT-------TCGA--- 304
consensus_9330#1 GCCGAGCAAAACGCACAGG-G-CTGCCCACTATGG--TTCAACTGT-------TCGA--- 346
consensus_9330#0 CACATGCCAAATGAACTCACGGCGGGCCGTTGCCGAATTCCACTGCGCCCACATCGACTG 324
* ** *** * ** * * * ** * * *** **** ****
consensus_9330#2 TGCTGGAACAGCGCGCCCATGATAAGTGTTATCTGTTCGGCAAAAC-GTACGAACTGCAC 359
consensus_9330#3 TGCTGGAACAGCGCGCCCATGATAAGTGTTATCTGTTCGGCAAAAC-GTACGAACTGCAC 363
consensus_9330#1 TGCTGGAACAGCGCGCCCATGATAAGTGTTATCTGTTCGGCAAAAC-GTACGAACTGCAC 405
consensus_9330#0 TCCCGAGTTCCTGTCGCCACACCGGGCCGGCTGTGTGCGCCAGTACCGCACGAACGATTG 384
* * * * *** * * *** ** ** ** * ******
consensus_9330#2 GCGCACGTCCCGG----------ACGAGAAG---GTGAAATCGTCCTGCCTGGCCCTGTG 406
consensus_9330#3 GCGCACGTCCCGG----------ACGAGAAG---GTGAAATCGTCCTGCCTGGCCCTGTG 410
consensus_9330#1 GCGCACGTCCCGG----------ACGAGAAG---GTGAAATCGTCCTGCCTGGCCCTGTG 452
consensus_9330#0 CTGCTCGTCCCGGCAGGCGTGCGGCGAGAAGCGCACCAATCTGCCCCGCCGTACGGTGGG 444
** ******** ******* ** * ** *** * ** *
consensus_9330#2 C------ACATGTCAAATGAACTCACGG-CGC-GCCGTT-GCCGA---GTTCCAC---TG 451
consensus_9330#3 C------ACATGCCAAATGAACTCACGGACGC-GCCGTTAGCCGA---GTTCCACAT-GG 459
consensus_9330#1 C------ACATGCCAAATGAACTCACGG-CGC-GCCGTT-GCCGA---GTTCCAC---TG 497
consensus_9330#0 CGCCGTGACGTACTACGAGGGCGAACGGATGCAGCTGCCGGACGACCCGTGCCAGACGTG 504
* ** * * * * **** ** ** * * *** ** *** *
consensus_9330#2 CGCCCACATCGACTGTCCCGAGTTCCTGTCAGCGCATCGGGCCGGCTGTGTGCGC-AGTA 510
consensus_9330#3 CGCCCACATCGACTGTCCCGA--------------------------------------- 480
consensus_9330#1 CGCCCACATCGACTGTCCCGAGTTCCTGTCGCCACACCGGGCCGGCTGTGTGCGCCAGTA 557
consensus_9330#0 CATCTGCACGCAGCATTTCAA-CGCGAGCGACCCGCACGGCCACACGAAATGCTACACGA 563
* * ** * * * *
consensus_9330#2 CCG-ACGAACGATTGCTGCTCGTCCCGGCAGGCGTGCGGCGAGAAGGCGCACC------- 562
consensus_9330#3 ------------------------------------------------------------
consensus_9330#1 CCGCACGAACGATTGCTGCTCGTCCCGGCAGGCGTGCGGCGAGAAGCGCACCAATCTGCC 617
consensus_9330#0 ACGCGTGTGCGTTCGA-GCTGATAGCGCCGTCGGTGCTGGCGCACGGTGCAGCCCCGGTG 622
consensus_9330#2 ------------------------------------------------------------
consensus_9330#3 ------------------------------------------------------------
consensus_9330#1 CCGCTGTACGGTGGGCGCGGTGACGTACTACGAGGGCGAACGGATGCAGCTGCCGGACGA 677
consensus_9330#0 TACTACGGCAATCGGTGCTGCCCGTGGGAGTGGCGACTGCCAAAAGCAAACGATCGTATC 682
consensus_9330#2 ------------------------------------------------------------
consensus_9330#3 ------------------------------------------------------------
consensus_9330#1 CCCGTGCCAGACGTGCATCTGTACGCAGCATTTCAACGCGAGCGACCCGCACGGCCACAC 737
consensus_9330#0 CGGCGGGACGAGGGAACGGAGAGCTCAAACGCTTTGGAAGGGAGGACGGTTCGAGACAGC 742
consensus_9330#2 ------------------------------------------------------------
consensus_9330#3 ------------------------------------------------------------
consensus_9330#1 GAAATGCTACACGAACGCGTGTGCGTTCGAGCTGATAGCGCCGTCGGTGCTGGCGCACGG 797
consensus_9330#0 TGCACGTACGGTAACTTGTCGCTAAGCATAGGGGAGTCACTGGTAGCGGATGTGACGCCG 802
consensus_9330#2 ------------------------------------------------------------
consensus_9330#3 ------------------------------------------------------------
consensus_9330#1 TGCGGCCCCGGTGTACTACGGCAATCGATGCTGCCCGTGGGAGTGGCGACTGCCAAAAGC 857
consensus_9330#0 GTCGGCATTTACCAGTGCTTCTGTGCCATCCCCCCGATGGTCCACTGTACCTTAACGGCA 862
consensus_9330#2 ------------------------------------------------------------
consensus_9330#3 ------------------------------------------------------------
consensus_9330#1 AAACGATCGTATCCGGCGGGACGAGGGAACGGAGAGCTCAAACGCTTTGGAAGAGTGGAC 917
consensus_9330#0 AACTGACGCGCGAGGAGCGTGATACGCGAATGTACTTCATGTTGAGCGTGATATGTGACA 922
consensus_9330#2 ----------------------------------------------
consensus_9330#3 ----------------------------------------------
consensus_9330#1 GGTTCGAGATAGCTGCACGTACGGTAACTTGACGATGAGC------ 957
consensus_9330#0 TTTATTACAATTATTACTGAATAAAAAGCTTTAAAACGAAAAAAAA 968
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||