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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_935#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 741 fasta sequence
[TGCGCTGCGCTCCCGGGGCAAGATCACGACAACGATTGCGCGCAAAACGGCCACCTTCATTGCGTCCGCCGTGCCGATGGGCTGTCTGCTGGCGCTCTGCTACATCGGCTGCCAGCGCGGCCTGGCCGTGGCACTGATGACGATCGGCATTACCGCGATCGGTGGCATGTTCTGTGGGCTGCTCTCGAACCACATCGACATTGCACCGAACTATGCCGGCATACTGATGGCGATTACGAACACGGCCGCCACGCTCTCCGGCATCATTGTGCCCATCTTCGTTGGACAGATTACGCACGGAAATCAAACGATTGGCGCTTGGCGGGTGATCTTCTTCGTAACGATCGCTCTGTACGTGGTGGAGATCGTTGCCTATTTGCTGCTGGCTTCGGGCGAAGAGCAACCATGGAACAAGGGCGACAAGCCGGCCAGCTCGATCGAAGCGGCCGAAGCGGAAGCCACACCGCTGAACACGAAGGAATCGAAACAGAGCTACAACGGCCAAGATCAGTAATTGCAGTCGGAAGCGAAACACAACACAAGACTACAAACAGAAGGGCAGCAGGGACAAGGGCTGGCGCAACACACTTTTAGCTTTCATGTACGATATTGATGGGGTAGCGCTCCATATCTCCATCTCCATCTTATCACTTCTTGTGTTTTGTTCGTTTTCGATCGGTTGATCGGTCAATTACCGTGGTAGGCCTGTGGAAAATGGTGCCCACTCTCTATTTTAATATT]
[+] EMBL BX618140 [TGCGCTGCGCTCCCGGGGCAAGATCACGACAACGATTGCGCGCAAAACGGCCACCTTCATTGCGTCCGCCGTGCCGATGGGCTGTCTGCTGGCGCTCTGCTACATCGGCTGCCAGCGCGGCCTGGCCGTGGCACTGATGACGATCGGCATTACCGCGATCGGTGGCATGTTCTGTGGGCTGCTCTCGAACCACATCGACATTGCACCGAACTATGCCGGCATACTGATGGCGATTACGAACACGGCCGCCACGCTCTCCGGCATCATTGTGCCCATCTTCGTTGGACAGATTACGCACGGAAATCAAACGATTGGCGCTTGGCGGGTGATCTTCTTCGTAACGATCGCTCTGTACGTGGTGGAGATCGTTGCCTATTTGCTGCTGGCTTCGGGCGAAGAGCAACCATGGAACAAGGGCGACAAGCCGGCCAGCTCGATCGAAGCGGCCGAAGCGGAAGCCACACCGCTGAACACGAAGGAATCGAAACAGAGCTACAACGGCCAAGATCAGTAATTGCAGTCGGAAGCGAAACACAACACAAGACTACAAACAGAAGGGCAGCAGGGACAAGGGCTGGCGCAACACACTTTTAGCTTTCATGTACGATATTGATGGGGTAGCGCTCCATATCTCCATCTCCATCTTATCACTTCTTGTGTTTTGTTCGTTTTCGATCGGTTGATCGGTCAATTACCGTGGTAGGCCTGTGGAAAATGGTGCCCACTCTCTATTTTAATATT]
consensusID : consensus_935#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence
[AGCAGAATNGCCCCCAGGTTATTTTTTCACGCTCTCCGGCCTCATTGTTTCCATCTTTGTTGGACAGATTACGCACGGCAAATCAAACGATTGGCGCTATGGCNGGGTGATCTATCTTCGTAACGATCGCTCTGTACGTAGGTGGAGATCGTTGCCTATTGCTGCTGGCTTCGGGCGAAGAGCAACCATGGAACAAGGGCGACAAGCCGGCCAGCTCGATCGAAGCGGCCGAAGCGGAAGCCACACCGCTGAACACGAAGGAATCGAAACAGAGCTACAANCGGCCAAGATCAGTAATTGCAGTCTGGATGCTGAAACACAACACAAGACTACAAACAGCAGGGACAGCAGGGACAAGGGCTGGCGCAACACACTTTTAGCTTTCATGTACGATATTGATGGGGTANCGCTCCATATCTCCATCTCCATCTTATCACTTCTTGTGTTTTGTTCGTATTTCGATCGGTTGATCGGTCAATTACCGTAGTAGGCCTGTGGAAAATGGTACCCACTCTCTATTTAATATT]
[+] EMBL AL932668 [AGCAGAATNGCCCCCAGGTTATTTTTTCACGCTCTCCGGCCTCATTGTTTCCATCTTTGTTGGACAGATTACGCACGGCAAATCAAACGATTGGCGCTATGGCNGGGTGATCTATCTTCGTAACGATCGCTCTGTACGTAGGTGGAGATCGTTGCCTATTGCTGCTGGCTTCGGGCGAAGAGCAACCATGGAACAAGGGCGACAAGCCGGCCAGCTCGATCGAAGCGGCCGAAGCGGAAGCCACACCGCTGAACACGAAGGAATCGAAACAGAGCTACAANCGGCCAAGATCAGTAATTGCAGTCTGGATGCTGAAACACAACACAAGACTACAAACAGCAGGGACAGCAGGGACAAGGGCTGGCGCAACACACTTTTAGCTTTCATGTACGATATTGATGGGGTANCGCTCCATATCTCCATCTCCATCTTATCACTTCTTGTGTTTTGTTCGTATTTCGATCGGTTGATCGGTCAATTACCGTAGTAGGCCTGTGGAAAATGGTACCCACTCTCTATTTAATATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_935#0 TGCGCTGCGCTCCCGGGGCAAGATCACGACAACGATTGCGCGCAAAACGGCCACCTTCAT 60
consensus_935#1 ------------------------------------------------------------
consensus_935#0 TGCGTCCGCCGTGCCGATGGGCTGTCTGCTGGCGCTCTGCTACATCGGCTGCCAGCGCGG 120
consensus_935#1 ------------------------------------------------------------
consensus_935#0 CCTGGCCGTGGCACTGATGACGATCGGCATTACCGCGATCGGTGGCATGTTCTGTGGGCT 180
consensus_935#1 ------------------------------------------------------------
consensus_935#0 GCTCTCGAACCACATCGACATTGCACCGAACTATGCCGGCATACTGATGGCGATTACGAA 240
consensus_935#1 ------------------------------------------AGCAGAATNGCCCCCAGG 18
* * *
consensus_935#0 CACGGCCGCCACGCTCTCCGGCATCATTGTGCCCATCTTCGTTGGACAGATTACGCACGG 300
consensus_935#1 TTATTTTTTCACGCTCTCCGGCCTCATTGTTTCCATCTTTGTTGGACAGATTACGCACGG 78
************* ******* ******* ********************
consensus_935#0 -AAATCAAACGATTGGCGCT-TGGCGGG-TGATCT-TCTTCGTAACGATCGCTCTGTACG 356
consensus_935#1 CAAATCAAACGATTGGCGCTATGGCNGGGTGATCTATCTTCGTAACGATCGCTCTGTACG 138
******************* **** ** ****** ************************
consensus_935#0 T-GGTGGAGATCGTTGCCTATTTGCTGCTGGCTTCGGGCGAAGAGCAACCATGGAACAAG 415
consensus_935#1 TAGGTGGAGATCGTTGCCTATT-GCTGCTGGCTTCGGGCGAAGAGCAACCATGGAACAAG 197
* ******************** *************************************
consensus_935#0 GGCGACAAGCCGGCCAGCTCGATCGAAGCGGCCGAAGCGGAAGCCACACCGCTGAACACG 475
consensus_935#1 GGCGACAAGCCGGCCAGCTCGATCGAAGCGGCCGAAGCGGAAGCCACACCGCTGAACACG 257
************************************************************
consensus_935#0 AAGGAATCGAAACAGAGCTACAAC-GGCCAAGATCAGTAATTGCAGTC-GGAAGC-GAAA 532
consensus_935#1 AAGGAATCGAAACAGAGCTACAANCGGCCAAGATCAGTAATTGCAGTCTGGATGCTGAAA 317
*********************** *********************** *** ** ****
consensus_935#0 CACAACACAAGACTACAAACAGAAGGG-CAGCAGGGACAAGGGCTGGCGCAACACACTTT 591
consensus_935#1 CACAACACAAGACTACAAACAGCAGGGACAGCAGGGACAAGGGCTGGCGCAACACACTTT 377
********************** **** ********************************
consensus_935#0 TAGCTTTCATGTACGATATTGATGGGGTAGCGCTCCATATCTCCATCTCCATCTTATCAC 651
consensus_935#1 TAGCTTTCATGTACGATATTGATGGGGTANCGCTCCATATCTCCATCTCCATCTTATCAC 437
***************************** ******************************
consensus_935#0 TTCTTGTGTTTTGTTCGT-TTTCGATCGGTTGATCGGTCAATTACCGTGGTAGGCCTGTG 710
consensus_935#1 TTCTTGTGTTTTGTTCGTATTTCGATCGGTTGATCGGTCAATTACCGTAGTAGGCCTGTG 497
****************** ***************************** ***********
consensus_935#0 GAAAATGGTGCCCACTCTCTATTTTAATATT 741
consensus_935#1 GAAAATGGTACCCACTCTCTATTT-AATATT 527
********* ************** ******
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||