cluster # 9523

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Anopheles gambiae
cluster # 9523 cluster # 9523 Sequences # 17 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9523#0 length = 904 sequences # 14

consensus_9523#1 length = 668 sequences # 2
consensus_9523#2 length = 473 sequences # 1

consensusID : consensus_9523#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 904
fasta sequence

                              [CCCCGGCCGTGTAATCGTGAGTGTTTCATAGTTGTTCGCCAAAATAACTGCCAGTATCAGCAGCCGAACAACAATCGATGCATTTGTTCTCGTTCCCACGAATGTAGCGTCTGCTTGCTGGAGCGTATTTAAAACATACGCCTGTGATCATTTTCCGACTCAGTCCGCCG-GGTTCAGGTGTTGTTGATAGCTGCTACATCGGGTCGTGCTGAACGTTTGCGCCAGTGTCCGTTTGTGTTACCGTAGTGTTGCATTTAGAAGCAAGTGTAAACCATAAAATGTTGTCAAAAGGGCATGTTATGATGGTGGCACTGTGTGCTGTTTGTGCCATCTTCGGCACAACAACTGTGGAGGGGGCTGCGCTTAACCGATCGCCCCGTCAGCTGAGCAGCTTACTAACACTAAGCGGTGAATCAAACGCACGAATTGAAAATGGTACCATTATTTGTGACACGCTCAAGTGCCCGGCCGAATCGTTCAAGTGCGTAATTGTCAAAAACTCCACCAAGGACGACGTAAACAAGGTACAGGTCACGCGCGAGTGCCTTGATCCAGCGGGCAAGGCGACGGCCAAGACGGTCA-CCACCGAGGCGTCCAACTTCCCGGGCCAGCAGTTTGAGAGCTATGCCGAAATCGATAAGAATGGCAACATTGCATCGTTCGACAATCGCGGCAATACGTACAATCATTCGGGAACCGGTGACATTCATTCCTATCTCTACGAGCAGATAGAGGACCTACACAAGGCGATAC-TCGATCAGCTGTCTAATGCTGGCAATCCGTTCGGGGCGTAGTGAGCTACAGTCAAACAGACACACACAAACTCGCACACGTCCAAACTGGTACCGTATAGATTAGTCCGAAATAATAAAAAAAATACAAATAAAGTTGATCTTTTGCTCAG]

[+] EMBL BX623794             [CCCCGGCCGTGTAATCGTGAGTGTTTCATAGTTGTTCGCCAAAATAACTGCCAGTATCAGCAGCCGAACAACAATCGATGCATTTGTTCTCGTTCCCACGAATGTAGCGTCTGCTTGCTGGAGCGTATTTAAAACATACGCCTGTGATCATTTTCCGACTCAGTCCGTCA GGTTCAGGTGTTGTTGATAGCTGCTACATCGGGTCGTGCTGAACGTTTGCGCCAGTGTCCGTTTGTGTTACCGTAGTGTTGCATTTAGAAGCAAGTGTAAACCATAAAATGTTGTCAAAAGGGCATGTTATGATGGTGGCACTGTGTGCTGTTTGTGCCATCTTCGGCACAACAGCTGTGGAAGGGGCTGCGCTTAACCGATCGCCCCGTCAGCTGAGCAGCTTACTAACACTAAGCGGTGAATCAAACGCACGAATTGAAAATGGTACCATTATTTGTGACACGCTCAAGTGCCCGGCCGAATCGTTCAAGTGCGTAATTGTCAAAAACTCCACCAAGGACGACGTAAACAAGGTACAGGTCACGCGCGAGTGCCTTGATCCAGCGGGCAAGGCGACGGCCAAGACGGTCA CCACCGANGTGTCCAACTTCCCNGGCCAGCAGTTTGAGAGCTATGCC NAATCGATAAGAATGGCAACATTGCA                                                                                                                                                                                                                                                         ]
[+] EMBL AY187043             [                                                                                                                                                                     CGTCA GGTTCAGGTGTTGTTGATAGCTGCTACATCGGGTCGTGCTGAACGTTTGCGCCAGTGTCCGTTTGTGTTACCGTAGTGTTGCATTTACAAGCAAGTGTAAACCATAAAATGTTGTCAAAAGGGCATGTTATGATGGTGGCACTGTGTGCCGTTTGTGCCATCTTCGGCGCAACAACTGTGGAGGGGGCTGCGCTTAACCGATCGCCCCGTCAGCTGAGCAGCTTACTAACACTAAGCGGTGAATCAAACGCACGAATTGAAAATGGTACCATTATTTGTGACACGCTCAAGTGCCCGGCCGAATCGTTCAAGTGCGTAATTGTCAAAAACTCCACCAAGGACGACGTAAACAAGGTACAGGTCACGCGCGAGTGCCTTGATCCAGCGGGCAAGGCGACGGCCAAGACGGTCA CCACCGAGGCGTCCAACTTCCCGGGCCAGCAGTTTGAGAGCTATGCCGAAATCGATAAGAATGGCAACATTGCATCGTTCGACAATCGCGGCAATACGTACAATCATTCGGGAACCGGTGACATTCATTCCTATCTCTACGAGCAGATAGAGGACCTACACAAGGCGATAC TCGATCAGCTGTCTAATGCTGGCAACCCGTTCGGGGCGTAGTGAGCTACAGTCAAACAGACACACACAAACTCGCACACGTCCAAACTGGTACCGTATTGATTAGTCCAAAAAAAAAAA                                ]
[+] EMBL BM590324             [                                                                                                                                                                       CCGAGGTTCAGGTGTTGTTGATAGCTGCTACATCGGGTCGTGCTGAACGTTTGCGCCAGTGTCCGTTTGTGTTACCGTAGTGTTGCATTTAGAAGCAAGTGTAAACCTTAAAATGTTGTCAAAAGGGCATGTTATGACGGTGGCACTGTGTGCTGTTTGTGCCATCTTCGGCACAACAACTGTGGAGGGAGCTGCGCTTAACCGATCGCCCCGTCAGCTGAGCAGCTTACTAACACTAAGCGGTGAATCAAACGCACGAATTGAAAATGGTACCATTATTTGTGACACGCTCAAGTGCCCGGCCGAATCGTTCAAGTGCGTAATTGTCAAAAACTCCACCAAGGACGACGTAAACAAGGTACAGGTCACGCGCGAGTGCCTTGATCCAGCGGGCAAGGCGACGGCCAAGACGGTCA CCACCGAGGCGTCCAACTTCCCAGGCCAGCAGTTTGAGAGCTATGCCGAAATCGATAAGAATGGCAACATTGCATCGTTCGACAATCGCGGCAATACGTACAATCATTCGGGAACCGGTGACATTCATTCCTATCTCTACGAGCAGATAGAGGACCTACACAAGGCGATAC TCGATCAGCTGTCTAATGCTGGCAATCCGTTCGGGGCGTAGTGAGCTACAGTCAAACAGACACACACACACACACACACGTCCAAATTGGTACCGTATAGATTAGTCCGAAATAAAAAAAtac                            ]
[+] EMBL BM593481             [                                                                                                                                                                       CCG GGTTCAGGTGTTGTTGATAGCTGCTACATCGGGTCGTGCTGAACGTTTGCGCCAGTGTCCGTTTGTGTTACCGTAGTGTTGCATTTAGAAGCAAGTGTAAACCTTAAAATGTTGTCAAAAGGGCATGTTATGACGGTGGCACTGTGTGCTGTTTGTGCCATCTTCGGCACAACAACTGTGGAGGGAGCTGCGCTTAACCGATCGCCCCGTCAGCTGAGCAGCTTACTAACACTAAGCGGTGAATCAAACGCACGAATTGAAAATGGTACCATTATTTGTGACACGCTCAAGTGCCCGGCCGAATCGTTCAAGTGCGTAATTGTCAAAAACTCCACCAAGGACGACGTAAACAAGGTACAGGTCACGCGCGAGTGCCTTGATCCAGCGGGCAAGGCGACGGCCAAGACGGTCA CCACCGAGGCGTCCAACTTCCCAGGCCAGCAGTTTGAGAGCTATGCCGAAATCGATAAGAATGGCAACATTGCATCGTTCGACAATCGCGGCAATACGTACAATCATTCGGGAACCGGTGACATTCATTCCTATCTCTACGAGCAGATAGAGGACCTACACAAGGCGATAC TCGATCAGCTGTCTAATGCTGGCAATCCGTTCGGGGCGTAGTGAGCTACAGTCAA                                                                                                ]
[+] EMBL BM614786             [                                                                                                                                                                       CCG GGTTCAGGTGTTGTTGATAGCTGCTACATCGGGTCGTGCTGAACGTTTGCGCCAGTGTCCGTTTGTGTTACCGTAGTGTTGCATTTAGAAGCAAGTGTAAACCTTAAAATGTTGTCAAAAGGGCATGTTATGACGGTGGCACTGTGTGCTGTTTGTGCCATCTTCGGCACAACAACTGTGGAGGGAGCTGCGCTTAACCGATCGCCCCGTCAGCTGAGCAGCTTACTAACACTAAGCGGTGAATCAAACGCACGAATTGAAAATGGTACCATTATTTGTGACACGCTCAAGTGCCCGGCCGAATCGTTCAAGTGCGTAATTGTCAAAAACTCCACCAAGGACGACGTAAACAAGGTACAGGTCACGCGCGAGTGCCTTGATCCAGCGGGCAAGGCGACGGCCAAGACGGTCA CCACCGAGGCGTCCAACTTCCCAGGCCAGCAGTTTGAGAGCTATGCCGAAATCGATAAGAATGGCAACATTGCATCGTTCGACAATCGCGGCAATACGTACAATCATTCGGGAACCGGTGACATTCATTCCTATCTCTACGAGCAGATAGAGGACCTACACAAGGCGATAC TCGATCAGCTGTCTAATGCTGGCAATCCGTTtc                                                                                                                      ]
[+] EMBL BM641834             [                                                                                                                                                                       CCG GGTTCAGGTGTTGTTGATAGCTGCTACATCGGGTCGTGCTGAACGTTTGCGCCAGTGTCCGTTTGTGTTACCGTAGTGTTGCATTTAGAAGCAAGTGTAAACCTTAAAATGTTGTCAAAAGGGCATGTTATGACGGTGGCACTGTGTGCTGTTTGTGCCATCTTCGGCACAACAACTGTGGAGGGAGCTGCGCTTAACCGATCGCCCCGTCAGCTGAGCAGCTTACTAACACTAAGCGGTGAATCAAACGCACGAATTGAAAATGGTACCATTATTTGTGACACGCTCAAGTGCCCGGCCGAATCGTTCAAGTGCGTAATTGTCAAAAACTCCACCAAGGACGACGTAAACAAGGTACAGGTCACGCGCGAGTGCCTTGATCCAGCGGGCAAGGCGACGGCCAAGACGGTCA CCACCGAGGCGTCCAACTTCCCAGGCCAGCAGTTTGAGAGCTATGCCGAAATCGATAAGAATGGCAACATTGCATCGTTCGACAATCGCGGCAATACGTACAATCATTCGGGAACCGGTGACATTCATTCCTATCTCTACGAGCAGATAGAGGACCTACACAAGGCGATAC TCGATCAGCTGTCT                                                                                                                                         ]
[+] EMBL BM585416             [                                                                                                                                                                        cc GGTTCAGGTGTTGTTGATAGCTGCTACATCGGGTCGTGCTGAACGTTTGCGCCAGTGTCCGTTTGTGTTACCGTAGTGTTGCATTTAGAAGCAAGTGTAAACCTTAAAATGTTGTCAAAAGGGCATGTTATGACGGTGGCACTGTGTGCTGTTTGTGCCATCTTCGGCACAACAACTGTGGAGGGAGCTGCGCTTAACCGATCGCCCCGTCAGCTGAGCAGCTTACTAACACTAAGCGGTGAATCAAACGCACGAATTGAAAATGGTACCATTATTTGTGACACGCTCAAGTGCCCGGCCGAATCGTTCAAGTGCGTAATTGTCAAAAACTCCACCAAGGACGACGTAAACAAGGTACAGGTCACGCGCGAGTGCCTTGATCCAGCGGGCAAGGCGACGGCCAAGACGGTCA CCACCGAGGCGTCCAACTTCCCAGGCCAGCAGTTTGAGAGCTATGCCGAAATCGATAAGAATGGCAACATTGCATCGTTCGACAATCGCGGCAATACGTACAATCATTCGGGAACCGGTGACATTCATTCCTATCTCTACGAGCAGATAGAGGACCTACACAAGGCGATAC TCGATCAGCTGTCTAATGCTGGCAATCCGTTCGGGGC                                                                                                                  ]
[+] EMBL BM618374             [                                                                                                                                                                            ccgCAGGTGTTGTTGATAGCTGCTACATCGGGTCGTGCTGAACGTTTGCGCCAGTGTCCGTTTGTGTTACCGTAGTGTTGCATTTAGAAGCAAGTGTAAACCATAAAATGTTGTCAAAAGGGCATGTTATGATGGTGGCACTGTGTGCTGTTTGTGCCATCTTCGGCACAACAGCTGTGGAAGGGGCTGCGCTTAACCGATCGCCCCGTCAGCTGAGCAGCTTACTAACACTAAGCGGTGAATCAAACGCACGAATTGAAAATGGTACCATTATTTGTGACACGCTCAAGTGCCCGGCCGAATCGTTCAAGTGCGTAATTGTCAAAAACTCCACCAAGGACGACGTAAACAAGGTACAGGTCACGCGCGAGTGCCTTGATCCAGCGGGCAAGGCGACGGCCAAGACGGTCA CCACCGAGGTGTCCAACTTCCCGGGCCAGCAGTTTGAGAGCTATGCCGAAATCGATAAGAATGGCAACATTGCATCGTTCGACAATCGCGGCAATACGTACAATCATTCGGGAACCGGTGACATTCATTCCTATCTCTACGAGCAGATAGAGGACCTACACAAGGCGATAC TCGATCAGCTGTCTAATGCTGGCAATCCGTTCGGGGCGTAGTGAGCTACAGTCAAACAGACACACACAAACTCGCACACGTCCAAACTGGTACCGTATAGAT                                                 ]
[+] EMBL BM579913             [                                                                                                                                                                               ccGGTGTTGTTGATAGCTGCTACATCGGGTCGTGCTGAACGTTTGCGCCAGTGTCCGTTTGTGTTACCGTAGTGTTGCATTTAGAAGCAAGTGTAAACCATAAAATGTTGTCAAAAGGGCATGTTATGATGGTGGCACTGTGTGCTGTTTGTGCCATCTTCGGCACAACAGCTGTGGAAGGGGCTGCGCTTAACCGATCGCCCCGTCAGCTGAGCAGCTTACTAACACTAAGCGGTGAATCAAACGCACGAATTGAAAATGGTACCATTATTTGTGACACGCTCAAGTGCCCGGCCGAATCGTTCAAGTGCGTAATTGTCAAAAACTCCACCAAGGACGACGTAAACAAGGTACAGGTCACGCGCGAGTGCCTTGATCCAGCGGGCAAGGCGACGGCCAAGACGGTCACCCACCGAGGTGTCCAACTTCCCGGGCCAGCAGTTTGAGAGCTATGCCGAAATCGATAAGAATGGCAACATTGCATCGTTCGACAATCGCGGCAATACGTACAATCATTCGGGAACCGGTGACATTCATTCCTATCTCTACGAGCAGATAGAGGACCTACACAAGGCGATACTTCGATCAGCTGTCTAATGCTGGCAATCCGTTCGGGGCGTAGTGAGCTACAGTCAAACAGACACAC                                                                                      ]
[+] EMBL BM624466             [                                                                                                                                                                                    ccgGTTGATAGCTGCTACATCGGGTCGTGCTGAACGTTTGCGCCAGTGTCCGTTTGTGTTACCGTAGTGTTGCATTTAGAAGCAAGTGTAAACCATAAAATGTTGTCAAAAGGGCATGTTATGATGGTGGCACTGTGTGCTGTTTGTGCCATCTTCGGCACAACAGCTGTGGAAGGGGCTGCGCTTAACCGATCGCCCCGTCAGCTGAGCAGCTTACTAACACTAAGCGGTGAATCAAACGCACGAATTGAAAATGGTACCATTATTTGTGACACGCTCAAGTGCCCGGCCGAATCGTTCAAGTGCGTAATTGTCAAAAACTCCACCAAGGACGACGTAAACAAGGTACAGGTCACGCGCGAGTGCCTTGATCCAGCGGGCAAGGCGACGGCCAAGACGGTCA CCACCGAGGTGTCCAACTTCCCGGGCCAGCAGTTTGAGAGCTATGCCGAAATCGATAAGAATGGCAACATTGCATCGTTCGACAATCGCGGCAATACGTACAATCATTCGGGAACCGGTGACATTCATTCCTATCTCTACGAGCAGATAGAGGACCTACACAAGGCGATAC TCGATCAGCTGTCTAATGCTGGCAATCCGTTCGGGGCGTAGTGAGCTACAGTCAAACAGACACACACAAACTCGCACACGTCCAAACTGGTACCGTATAGATTAGTCCGAAATAATA                                  ]
[+] EMBL BM594763             [                                                                                                                                                                                            TAGCTGCTACATCGGGTCGTGCTGAACGTTTGCGCCAGTGTCCGTTTGTGTTACCGTAGTGTTGCATTTAGAAGCAAGTGTAAACCTTAAAATGTTGTCAAAAGGGCATGTTATGACGGgt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BX616818             [                                                                                                                                                                                                                         TTGCGCCAGTGTCCGTTTGTGTTACCGTATTGTTGCATTTAGAAGCAAGTGTAAACCATAAAATGTTGTCAAAAGGGCATGTTATGATGGTGGCACTGTGTGCTGTTTGTGCCATCTTCGGCACAACAGCTGTGGAAGGGGCTGCGCTTAACCGATCGCCCCGTCAGCTGAGCAGCTTACTAACACTAAGCGGTGAATCAAACGCACGAATTGAAAATGGTACCATTATTTGTGACACGCTCAAGTGCCCGGCCGAATCGTTCAAGTGCGTAATTGTCAAAAACTCCACCAAGGACGACGTAAACAAGGTACAGGTCACGCGCGAGTGCCTTGATCCAGCGGGCAAGGCGACGGCCAAGACGGTCA CCACCGAGGTGTCCAACTTCCCGGGCCAGCAGTTTGAGAGCTATGCCGAAATCGATAAGAATGGCAACATTGCATCGTTCGACAATCGCGGCAATACGTACAATCATTCGGGAACCGGTGACATTCATTCCTATCTCTACGAGCAGATAGAGGACCTACACAAGGCGATAC TCGATCAGCTGTCTAATGCTGGCAATCCGTTCGGGGCGTAGTGAGCTACAGTCAAACAGACACACACAAACTCGCACACGTCCAAACTGGTACCGTATAGATTAGTCCGAAATAATAAAAAAAATACAAATAAAGTTGATCTTT       ]
[+] EMBL BX609308             [                                                                                                                                                                                                                               CAGTGTCCGTTTGTGTTACCGCATTGTTGCATTTAGAAGCAAGTGTAAACCATAAAATGTTGTCAAAAGGGCATGTTATGATGGTGGCACTGTGTGCTGTTTGTGCCATCTTCGGCACAACAGCTGTGGAAGGGGCTGCGCTTAACCGATCGCCCCGTCAGCTGAGCAGCTTACTAACACTAAGCGGTGAATCAAACGCACGAATTGAAAATGGTACCATTATTTGTGACACGCTCAAGTGCCCGGCCGAATCGTTCAAGTGCGTAATTGTCAAAAACTCCACCAAGGACGACGTAAACAAGGTACAGGTCACGCGCGAGTGCCTTGATCCAGCGGGCAAGGCGACGGCCAAGACGGTCA CCACCGAGGTGTCCAACTTCCCGGGCCAGCAGTTTGAGAGCTATGCCGAAATCGATAAGAATGGCAACATTGCATCGTTCGACAATCGCGGCAATACGTACAATCATTCGGGAACCGGTGACATTCATTCCTATCTCTACGAGCAGATAGAGGACCTACACAAGGCGATAC TCGATCAGCTGTCTAATGCTGGCAATCCGTTCGGGGCGTAGTGAGCTACAGTCAAACAGACACACACAAACTCGCACACGTCCAAACTGGTACCGTATAGATTAGTCCGAAATAATAAAAAAAATACAAATAAAGTTGATCTTTTGCTCAG]
[+] EMBL BM643556             [                                                                                                                                                                                                                                                                                                                                    ccgGCCATCTTCGGCACAACAACTGTGGAGGGAGCTGCGCTTAACCGATCGCCCCGTCAGCTGAGCAGCTTACTAACACTAAGCGGTGAATCAAACGCACGAATTGAAAATGGTACCATTATTTGTGACACGCTCAAGTGCCCGGCCGAATCGTTCAAGTGCGTAATTGTCAAAAACTCCACCAAGGACGACGTAAACAAGGTACAGGTCACGCGCGAGTGCCTTGATCCAGCGGGCAAGGCGACGGCCAAGACGGTCA CCACCGAGGCGTCCAACTTCCCAGGCCAGCAGTTTGAGAGCTATGCCGAAATCGATAAGAATGGCAACATTGCATCGTTCGACAATCGCGGCAATACGTACAATCATTCGGGAACCGGTGACATTCATTCCTATCTCTACGAGCAGATAGAGGACCTACACAAGGCGATAC TCGATCAGCTGTCTAATGCTGGCAATCCGTTCGGGGCGTAGTGAGCTACAGTCAAACAGACACACACACACACACACACGTCCAAATTGGTACCGTATAGATTAGTCCGA                                         ]




>consensus_9523#0
CCCCGGCCGTGTAATCGTGAGTGTTTCATAGTTGTTCGCCAAAATAACTGCCAGTATCAG
CAGCCGAACAACAATCGATGCATTTGTTCTCGTTCCCACGAATGTAGCGTCTGCTTGCTG
GAGCGTATTTAAAACATACGCCTGTGATCATTTTCCGACTCAGTCCGCCGGGTTCAGGTG
TTGTTGATAGCTGCTACATCGGGTCGTGCTGAACGTTTGCGCCAGTGTCCGTTTGTGTTA
CCGTAGTGTTGCATTTAGAAGCAAGTGTAAACCATAAAATGTTGTCAAAAGGGCATGTTA
TGATGGTGGCACTGTGTGCTGTTTGTGCCATCTTCGGCACAACAACTGTGGAGGGGGCTG
CGCTTAACCGATCGCCCCGTCAGCTGAGCAGCTTACTAACACTAAGCGGTGAATCAAACG
CACGAATTGAAAATGGTACCATTATTTGTGACACGCTCAAGTGCCCGGCCGAATCGTTCA
AGTGCGTAATTGTCAAAAACTCCACCAAGGACGACGTAAACAAGGTACAGGTCACGCGCG
AGTGCCTTGATCCAGCGGGCAAGGCGACGGCCAAGACGGTCACCACCGAGGCGTCCAACT
TCCCGGGCCAGCAGTTTGAGAGCTATGCCGAAATCGATAAGAATGGCAACATTGCATCGT
TCGACAATCGCGGCAATACGTACAATCATTCGGGAACCGGTGACATTCATTCCTATCTCT
ACGAGCAGATAGAGGACCTACACAAGGCGATACTCGATCAGCTGTCTAATGCTGGCAATC
CGTTCGGGGCGTAGTGAGCTACAGTCAAACAGACACACACAAACTCGCACACGTCCAAAC
TGGTACCGTATAGATTAGTCCGAAATAATAAAAAAAATACAAATAAAGTTGATCTTTTGC
TCAG

consensusID : consensus_9523#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 668
fasta sequence

                              [CGAGGCAGAATCGGCACGATGGAGTGTTGTT-GATAGCTGCTACATCG-GGTCGTGCTGAACGTTTGCGCCAGTGTCCGTTTGTGTTACCGTAG-TGTTGCATTTACAAGCAAGTGTAAACCATAAAATGTTGTCNAAAGGGCATGTTATG-ATGGTGGCACTGTGTGCCGTTTGTGCCATCTTCGGGACAA-CAACTGTGNGAGGGGCTGCGCTTAACCGATCGCCCCGTCAGCTGAGCAGCTTACTAACACTAAGCGGTGAATCAAACGCACGAATTGAAAATGGTACCACTTATTTGTGACACGCTCAAGTGCCCGGCCGAATCGTTCAAGTGCGTAATTGTCAANAAACTCCACCAAGGACGACGTANACAAGGTACA-GGTCACGCGCGAGTGCCTTGATCCAGCGGGCAAGGCGACGGCCAAGACGGTCACCACCGAGGCGTCCAACTTCCCGGGCCAGCAGTTTGAGAGCTATGCCGAAATCGATAAGAATGGCAACATTGCATCGCTTCGACAATCGCGGCAATACGTACAATCATTCGGGAACCGGTGACATTCATTCCTATCTCTACGAGCAGATAGAGGACCTACACAAGGCGATACTCGATCAGCTGTCTAATGCTGGCAATCCGTNCGGGGCGTAGTTGAGCTACAGTCAAACAGACACAC]

[+] EMBL BX468936             [CGAGGCAGAATCGGCACGATGGAGTGTTGTT GATAGCTGCTACATCG GGTCGTGCTGAACGTTTGCGCCAGTGTCCGTTTGTGTTACCGTAG TGTTGCATTTACAAGCAAGTGTAAACCATAAAATGTTGTCNAAAGGGCATGTTATG ATGGTGGCACTGTGTGCCGTTTGTGCCATCTTCGGGACAA CAACTGTGNGAGGGGCTGCGCTTAACCGATCGCCCCGTCAGCTGAGCAGCTTACTAACACTAAGCGGTGAATCAAACGCACGAATTGAAAATGGTACCACTTATTTGTGACACGCTCAAGTGCCCGGCCGAATCGTTCAAGTGCGTAATTGTCAANAAACTCCACCAAGGACGACGTANACAAGGTACA GGTCACGCGCGAGTGCCTTGATCCAGCGGGCAAGGCGACGGCCAAGACGGTCACCACCGAGGCGTCCAACTTCCCGGG                                                                                                                                                                                                                     ]
[+] EMBL AL932953             [      AGAATCCCCCCGA  G GT TTATTCGATAGCTGCTACATCGCGGTCGTGCTGAACGTTTGCGCCAGTGTCCGTTTGTGTTACCGTAGCTGTTGCATTTAGAAGCAAGTGTAAACCATAAAATGTTGTCAAAAGGGCATGTTATGCATGGTGGCACTGTGTGCTGTTTGTGCCATCTTCGGCACAACCAGCTGTGGAAGGGGCTGCGCTTAACCGATCGCCCCGTCAGCTGAGCAGCTTACTAACACTAAGCGGTGAATCAAACGCACGAATTGAAAATGGTACCA TTATTTGTGACACGCTCAAGTGCCCGGCCGAATCGTTCAAGTGCGTAATTGTCAA AAACTCCACCAAGGACGACGTAAACAAGGTACACGGTCACGCGCGAGTGCCTTGATCCAGCGGGCAAGGCGACGGCCAAGACGGTCACCACCGAGGTGTCCAACTTCCCGGGCCAGCAGTTTGAGAGCTATGCCGAAATCGATAAGAATGGCAACATTGCATCGCTTCGACAATCGCGGCAATACGTACAATCATTCGGGAACCGGTGACATTCATTCCTATCTCTACGAGCAGATAGAGGACCTACACAAGGCGATACTCGATCAGCTGTCTAATGCTGGCAATCCGTNCGGGGCGTAGTTGAGCTACAGTCAAACAGACACAC]




>consensus_9523#1
CGAGGCAGAATCGGCACGATGGAGTGTTGTTGATAGCTGCTACATCGGGTCGTGCTGAAC
GTTTGCGCCAGTGTCCGTTTGTGTTACCGTAGTGTTGCATTTACAAGCAAGTGTAAACCA
TAAAATGTTGTCNAAAGGGCATGTTATGATGGTGGCACTGTGTGCCGTTTGTGCCATCTT
CGGGACAACAACTGTGNGAGGGGCTGCGCTTAACCGATCGCCCCGTCAGCTGAGCAGCTT
ACTAACACTAAGCGGTGAATCAAACGCACGAATTGAAAATGGTACCACTTATTTGTGACA
CGCTCAAGTGCCCGGCCGAATCGTTCAAGTGCGTAATTGTCAANAAACTCCACCAAGGAC
GACGTANACAAGGTACAGGTCACGCGCGAGTGCCTTGATCCAGCGGGCAAGGCGACGGCC
AAGACGGTCACCACCGAGGCGTCCAACTTCCCGGGCCAGCAGTTTGAGAGCTATGCCGAA
ATCGATAAGAATGGCAACATTGCATCGCTTCGACAATCGCGGCAATACGTACAATCATTC
GGGAACCGGTGACATTCATTCCTATCTCTACGAGCAGATAGAGGACCTACACAAGGCGAT
ACTCGATCAGCTGTCTAATGCTGGCAATCCGTNCGGGGCGTAGTTGAGCTACAGTCAAAC
AGACACAC

consensusID : consensus_9523#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 473
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGTGATGGTGGCACTGTGTGCTGTTTGTGCCATCTTCGGCACAACAGCTGTGGAAGGGGCTGCGCTTAACCGATCGCCCCGTCAGCTGAGCAGCTTACTAACACTAAGCGGTGAATCAAACGCACGAATTGAAAATGGTACCATTATTTGTGACACGCTCAAGTGCCCGGCCGAATCGTTCAAGTGCGTAATTGTCAAAAACTCCACCAAGGACGACGTAAACAAGGTACAGGTCACGCGCGAGTGCCTTGATCCAGCGGGCAAGGCGACGGCCAAGACGGTCACCACCGAGGTGTCCAACTTCCCGGGCCAGCAGTTTGAGAGCTATGCCGAAATCGATAAGAATGGCAACATTGCATCGTTCGACAATCGCGGCAATACGTACAATCATTCGGGAACCGGTGACATTCATTCCTATCTCTACGAGCAGATAGAGGACCTACACAAG]

[+] EMBL BM645110             [CCGCCCACGCGTCCGCCCACGCGTCCGTGATGGTGGCACTGTGTGCTGTTTGTGCCATCTTCGGCACAACAGCTGTGGAAGGGGCTGCGCTTAACCGATCGCCCCGTCAGCTGAGCAGCTTACTAACACTAAGCGGTGAATCAAACGCACGAATTGAAAATGGTACCATTATTTGTGACACGCTCAAGTGCCCGGCCGAATCGTTCAAGTGCGTAATTGTCAAAAACTCCACCAAGGACGACGTAAACAAGGTACAGGTCACGCGCGAGTGCCTTGATCCAGCGGGCAAGGCGACGGCCAAGACGGTCACCACCGAGGTGTCCAACTTCCCGGGCCAGCAGTTTGAGAGCTATGCCGAAATCGATAAGAATGGCAACATTGCATCGTTCGACAATCGCGGCAATACGTACAATCATTCGGGAACCGGTGACATTCATTCCTATCTCTACGAGCAGATAGAGGACCTACACAAG]




>consensus_9523#2
CCGCCCACGCGTCCGCCCACGCGTCCGTGATGGTGGCACTGTGTGCTGTTTGTGCCATCT
TCGGCACAACAGCTGTGGAAGGGGCTGCGCTTAACCGATCGCCCCGTCAGCTGAGCAGCT
TACTAACACTAAGCGGTGAATCAAACGCACGAATTGAAAATGGTACCATTATTTGTGACA
CGCTCAAGTGCCCGGCCGAATCGTTCAAGTGCGTAATTGTCAAAAACTCCACCAAGGACG
ACGTAAACAAGGTACAGGTCACGCGCGAGTGCCTTGATCCAGCGGGCAAGGCGACGGCCA
AGACGGTCACCACCGAGGTGTCCAACTTCCCGGGCCAGCAGTTTGAGAGCTATGCCGAAA
TCGATAAGAATGGCAACATTGCATCGTTCGACAATCGCGGCAATACGTACAATCATTCGG
GAACCGGTGACATTCATTCCTATCTCTACGAGCAGATAGAGGACCTACACAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9523#0      CCCCGGCCGTGTAATCGTGAGTGTTTCATAGTTGTTCGCCAAAATAACTGCCAGTATCAG 60
consensus_9523#1      ------------------------------------------------------------
consensus_9523#2      ------------------------------------------------------------
                                                                                  

consensus_9523#0      CAGCCGAACAACAATCGATGCATTTGTTCTCGTTCCCACGAATGTAGCGTCTGCTTGCTG 120
consensus_9523#1      ------------------------------------------------------------
consensus_9523#2      ------------------------------------------------------------
                                                                                  

consensus_9523#0      GAGCGTATTTAAAACATACGCCTGTGATCATTTTCCGACTCAGT-CCGCCGGGTTCAGGT 179
consensus_9523#1      -----------------------------------CGAGGCAGAATCGGCACGATGGAGT 25
consensus_9523#2      ------------------------------------------------------------
                                                                                  

consensus_9523#0      GTTGTTGATAGCTGCTACATCGGGTCGTGCTGAACGTTTGCGCCAGTGTCCGTTTGTGTT 239
consensus_9523#1      GTTGTTGATAGCTGCTACATCGGGTCGTGCTGAACGTTTGCGCCAGTGTCCGTTTGTGTT 85
consensus_9523#2      ------------------------------------------------------------
                                                                                  

consensus_9523#0      ACCGTAGTGTTGCATTTAGAAGCAAGTGTAAACCATAAAATGTTGTCAAAAGGGCATGTT 299
consensus_9523#1      ACCGTAGTGTTGCATTTACAAGCAAGTGTAAACCATAAAATGTTGTCNAAAGGGCATGTT 145
consensus_9523#2      -------------------------------CCGCCCACGCGTCCGCCCACGCGTCCGT- 28
                                                      *    *   **   *  * * *   ** 

consensus_9523#0      ATGATGGTGGCACTGTGTGCTGTTTGTGCCATCTTCGGCACAACAACTGTGGAGGGGGCT 359
consensus_9523#1      ATGATGGTGGCACTGTGTGCCGTTTGTGCCATCTTCGGGACAACAACTGTGNGAGGGGCT 205
consensus_9523#2      --GATGGTGGCACTGTGTGCTGTTTGTGCCATCTTCGGCACAACAGCTGTGGAAGGGGCT 86
                        ****************** ***************** ****** *****   ******

consensus_9523#0      GCGCTTAACCGATCGCCCCGTCAGCTGAGCAGCTTACTAACACTAAGCGGTGAATCAAAC 419
consensus_9523#1      GCGCTTAACCGATCGCCCCGTCAGCTGAGCAGCTTACTAACACTAAGCGGTGAATCAAAC 265
consensus_9523#2      GCGCTTAACCGATCGCCCCGTCAGCTGAGCAGCTTACTAACACTAAGCGGTGAATCAAAC 146
                      ************************************************************

consensus_9523#0      GCACGAATTGAAAATGGTACCA-TTATTTGTGACACGCTCAAGTGCCCGGCCGAATCGTT 478
consensus_9523#1      GCACGAATTGAAAATGGTACCACTTATTTGTGACACGCTCAAGTGCCCGGCCGAATCGTT 325
consensus_9523#2      GCACGAATTGAAAATGGTACCA-TTATTTGTGACACGCTCAAGTGCCCGGCCGAATCGTT 205
                      ********************** *************************************

consensus_9523#0      CAAGTGCGTAATTGTCAAAAA-CTCCACCAAGGACGACGTAAACAAGGTACAGGTCACGC 537
consensus_9523#1      CAAGTGCGTAATTGTCAANAAACTCCACCAAGGACGACGTANACAAGGTACAGGTCACGC 385
consensus_9523#2      CAAGTGCGTAATTGTCAAAAA-CTCCACCAAGGACGACGTAAACAAGGTACAGGTCACGC 264
                      ****************** ** ******************* ******************

consensus_9523#0      GCGAGTGCCTTGATCCAGCGGGCAAGGCGACGGCCAAGACGGTCACCACCGAGGCGTCCA 597
consensus_9523#1      GCGAGTGCCTTGATCCAGCGGGCAAGGCGACGGCCAAGACGGTCACCACCGAGGCGTCCA 445
consensus_9523#2      GCGAGTGCCTTGATCCAGCGGGCAAGGCGACGGCCAAGACGGTCACCACCGAGGTGTCCA 324
                      ****************************************************** *****

consensus_9523#0      ACTTCCCGGGCCAGCAGTTTGAGAGCTATGCCGAAATCGATAAGAATGGCAACATTGCAT 657
consensus_9523#1      ACTTCCCGGGCCAGCAGTTTGAGAGCTATGCCGAAATCGATAAGAATGGCAACATTGCAT 505
consensus_9523#2      ACTTCCCGGGCCAGCAGTTTGAGAGCTATGCCGAAATCGATAAGAATGGCAACATTGCAT 384
                      ************************************************************

consensus_9523#0      CG-TTCGACAATCGCGGCAATACGTACAATCATTCGGGAACCGGTGACATTCATTCCTAT 716
consensus_9523#1      CGCTTCGACAATCGCGGCAATACGTACAATCATTCGGGAACCGGTGACATTCATTCCTAT 565
consensus_9523#2      CG-TTCGACAATCGCGGCAATACGTACAATCATTCGGGAACCGGTGACATTCATTCCTAT 443
                      ** *********************************************************

consensus_9523#0      CTCTACGAGCAGATAGAGGACCTACACAAGGCGATACTCGATCAGCTGTCTAATGCTGGC 776
consensus_9523#1      CTCTACGAGCAGATAGAGGACCTACACAAGGCGATACTCGATCAGCTGTCTAATGCTGGC 625
consensus_9523#2      CTCTACGAGCAGATAGAGGACCTACACAAG------------------------------ 473
                      ******************************                              

consensus_9523#0      AATCCGTTCGGGGCGTAGT-GAGCTACAGTCAAACAGACACACACAAACTCGCACACGTC 835
consensus_9523#1      AATCCGTNCGGGGCGTAGTTGAGCTACAGTCAAACAGACACAC----------------- 668
consensus_9523#2      ------------------------------------------------------------
                                                                                  

consensus_9523#0      CAAACTGGTACCGTATAGATTAGTCCGAAATAATAAAAAAAATACAAATAAAGTTGATCT 895
consensus_9523#1      ------------------------------------------------------------
consensus_9523#2      ------------------------------------------------------------
                                                                                  

consensus_9523#0      TTTGCTCAG 904
consensus_9523#1      ---------
consensus_9523#2      ---------