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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9539#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1027 fasta sequence
[AACATGCTGTCTTTTTGTTTGTAATTTTTGTTTATAACACGTA--ACTATTTTTATTTCT-GCGATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAG-AGCG-TTGATGACGTCCCCACTCATATCTCAATGATGTCAG-AACGCTTTCATAA-A-CGGAAGCCATATTGAGAGCTGA-TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG-ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC-TCCATTA-TTTTAATACAGC-TGATACAGTA-AA-GGATCGTGGACACTGTGCCAAACCACGCCACGCTG-TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT-AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC-TTTCATCAATTACACTTAGCGAATTGTT-ATCATCTGCTGG-TGGTGCCTGACCCATCTCCATGTTCGAT-GTGATGTACCT-GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG--AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT----CGAAC----GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCGCCTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG---TGCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCGCCGGATGTGCCACAAGTAGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAGCTATCGCTTGGGTTTTAACGTTGCTCTAAC-TAATTTAATAAGATTATTGATCATTTTGATAAACTTTTATAACAACAATTTGGCAGCTTTCGTGGTGTAATATACAAAAACGTCCTTCTCAGTCGGGGGCGCAAGAAAAAAGACATTTACGTAACC]
[+] EMBL BX466766 [AACATGCTGTCTTTTTGTTTGTAATTTTTGTTTATAACACGTAGCCCTATNTTTATTTCTGGCGATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAGAAGCGCTTGATNACGTCCCCACTCATATCTCAATGATGTCAGCAACGCTTTCATAANAGCGGAAGCCATATTGAGAGCTGACTGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACCGTCCATTAGTTTTAATACAGCGTGATACAGTACAACGGATCGTGGACACTGTGCCAAACCACGCCACGCTGCTGGAAATAAGCTGTCCCCTCCTTTTACGAACTATTGAAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTCGTTTCATCAATTACACTTAGCGAATTGTTGATCATCTGCTGGATGGTGCCTGACCCATCTCCATGTTCGATAGTGATGTACCTNNGTTGACATCGAATACGATTGGAAAAACGTT ATACCAGGAAAATTAATCTGTTga ]
[+] EMBL CNS099GD [ tttttttcaTTGTTTATATCACGTA GCTATTTTTATTTCT GCGATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAG AGCG TTGATGACGTCCCCCCTCATATCTCAATGATGTCAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTGCCTGACCCATCTCCATGTTCGAT GTGATGTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT CGAAC GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCGCCTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG TCCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCGCCGGATGTGCCAAAAGTAGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAGCTGTCGCTTGGGTTTTAACGTTGCTCTAAC TAATTTAATAAGATTATTGATCATTTTGATAAACTTTTATAACAA ]
[+] EMBL CNS0910B [ TA AACATTTTTATTTCT GCGATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAG AGCG TTGATGACGTCCCCACTCATATCTCAATGATGTCAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTGCCTGACCCATCTCCATGTTCGAT GTGATGTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT CGAAC GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCGCCTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG TCCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCGCCGGATGTGCCACAAGTAGCCAGCCGGGTGTTGGGAA CACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAGCTATCGCTTGGGTTTTAACGTTGCTCTAAC TAATTTAATAAGATTATTGATCATTTTGATAAACTTTTATAACAACAATTTGGCAGCTTTCGTGGTGTAATATACAAAAACGTCCTTCTCAGTCGGGGGCGCAAGAAAAA ]
[+] EMBL CNS097LS [ cct ACTATTTTTATTTCT GCGATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAG AGCG TTGATGACGTCCCCACTCATATCTCAATGATGTTAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTGCCTGACCCATCTCCATGTTCGAT GTGATGTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT CGAAC GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCGCCTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG TCCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCACCGGATGTGCCAAAAGTAGCCAGCCGGGTGTTGGGAA CACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAGCTATC ]
[+] EMBL CNS08E1R [ ga aaaATTTTTATTTCT GCGATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAG AGCG TTGATGACGTCCCCACTCATATCTCAATGATGTCAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTGCCTGACCCATCTCCATGTTCGAT GTGATGTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT CGAAC GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCGCCTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG TCCCGCTGGATTCATGCCGCAGATGACGC ]
[-] EMBL CNS0910A [ ATTTTTATTTCT GCGAT AGAAATATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAG AGCG TTGATGACGTCCCCACTCATATCTCAATGATGTCAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTGCCTGACCCATCTCCATGTTCGAT GTGATGTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT CGAAC GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCG CTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG TGCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCGCCGGATGTGCCACAAGTAGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAG TATCGCTTGGGTTTTAACGTTGCTCTAAC TAATTTAATAAGATTATTGATCATTTTGAT ]
[+] EMBL CNS09CFV [ TTTTTATTTCT GCGATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAG AGCG TTGATGACGTCCCCACTCATATCTCAATGATGTCAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTG ]
[-] EMBL CNS099GC [ TCT GCGATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACAAACTGGCGGTCGATCGAG AGCG TTGATGACGTCCCCCCTCATATCTCAATGATGTCAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTGCCTGACCCATCTCCATGTTCGAT GTGATGTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT CGAAC GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCG CTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG TGCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCGCCGGATGTGCCACAAGTAGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAGCTGTCGCTTGGGTTTTAACGTTGCTCTAAC TAATTTAATAAGATTATTGATCATTTTGAT ]
[+] EMBL CNS09BH4 [ GATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAG AGCG TTGATGACGTCCCCACTCATATCTCAATGATGTCAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCGCATTAATG ]
[-] EMBL CNS097LR [ TATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGATCGAG AGCG TTGATGACGTCCCCACTCATATCTCAATGATGTCAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTGCCTGACCCATCTCCATGTTCGAT GTGATGTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT CGAAC GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCG CTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG TGCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCACCGGATGTGCCACAAGTAGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAG TATCGCTTGGGTTTTAACGTTGCTCTAAC TAATTTAATAAGATTATTGATCATTTTGAT ]
[-] EMBL CNS08E1Q [ G AGCG TTGATGACGTCCCCACTCATATCTCAATGATGTCAG AACGCTTTCATAA A CGGAAGCCATATTGAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTGCCTGACCCATCTCCATGTTCGAT GTGATGTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT CGAAC GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCG CTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG TGCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCGCCGGATGTGCCACAAGTAGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAG TATCGCTTGGGTTTTAACGTTGCTCTAAC TAATTTAATAAGATTATTGATCATTTTGAT ]
[-] EMBL BX627219 [ GAGAGCTGA TGATTTTCTTCCATAAAAAGTTAGCGTCNTCTCAGTCACAGAAGGGCAGAATATCCGCG ATTAATGATGGTAGGAAGACGATGATCACGGGACGACC TCCATTA TTTTAATACAGC TGATACAGTA AA GGATCGTGGACACTGTGCCAAACCACGCCACGCTG TGGAAATAAGCTGTCCCCTCCTTTTACGAACTATT AAAACGGCTGTTGCAACGAAAAGCTTATCACAGGGTATCGCGTTGTGATTTC TTTCATCAATTACACTTAGCGAATTGTT ATCATCTGCTGG TGGTGCCTGACCCATCTCCATGTTCGAT GTGATGTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT CGAAC GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCGCCTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG TGCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCGCCGGATGTGCCACAAGTAGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAGCT ]
[-] EMBL BX620921 [ TTCTCCAAGGGCATCGCGTGGTGATTTC TTTCATCAATTACGCATAGCGAATTGTT ATCATCNGCTGG TGGTGCCTGAACCATCTCCATGCTCGAT GTGATGTACCT GGTTGACATGGAATCCGATTGGAAAAACGTTAATNCCAG AAACGAAGCTGTTTAGGTAGCGTCCCTCCTAGTAT CGAACGAANGTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTNTTATCCTTGGAATAATCGCCTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTTTTGCAGGACTGCAG TGGATTCATGCCGCGGATGACGCCTTTACCCGCCGGATGTGCCACAAGCCGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTCCATTACAAATACACACGCAACTAGCTATCGCTTGGGTTTTAACGTTGCTCTAGCGTAATTTAGTAAGATTATTGATCATTTTAATAAACTTTAATAACAACAACTTGGCAGCTTT ]
[-] EMBL CNS09CFU [ ttTACCT GGTTGACATCGAATCCGATTGGAAAAACGTTAATACCAG AAATTAATCTGTTTAGGTAGCGTCCCTCCTAGTAT CGAAC GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCG CTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAG TGCCGCTGGATTCATGCCGCAGATGACGCCTTTACCCGCCGGATGTGCCACAAGTAGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTTCATTACAAATACACACGCAACTAG TATCGCTTGGGTTTTAACGTTGCTCTAAC TAATTTAATAAGATTATTGATCATTTTGAT ]
[-] EMBL AL933375 [ AAACGTTAATACCAG AAACGAAGCTGTTTAGGTAGCGTCCCTCCTAGTATCGAACGAAC GTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAATAATCGCCTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTTTTGCAGGACTGCAG TGGATTCATGCCGCGGATGACGCCTTTACCCGCCGGATGTGCCACAAGCCGCCAGCCGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTCCATTACAAATACACACGCAACTAGCTATCGCTTGGGTTTTAACGTTGCTCTAGC TAATTTAGTAAGATTATTGATCATTTTAATAAACTTTAATAACAACAACTTGGCAGCTTTCGTGGTGTAATATACGAAAACGTCCTTGTCACTCGAGGGCGCNAGAGAAAAGACATTTACGTAACC]
[-] EMBL CNS09BH3 [ TTACAAATACACACGCAACTAG TATCGCTTGGGTTTTAACGTTGCTCTAAC TAATTTAATAAGATTATTGATCATTTTGATAAACTTTTATAACAACAATTTGGCAGCTTTCGTGGTGTAATATACAAAAACGTCC ]
consensusID : consensus_9539#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence
[AACTGTTTCAATGTTTTTAATACATTGACAATGTATTTATTTTTAATTAGAAAACTTTCCTTGAAAAGGACGATGGAAAAAACCGCAAGGTTGCCGACCGCTTGCACTAGGGTTTCTATGCTTCTAGGATAAATAATACGAATTTTTAGATACCTCTCACAAACGGACTCAATATTGAAAGCTGTTGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCGCAGAAGGGCAGAATGACCGCGATTAATGATGGTAGGAAGACGATGATCACGGGACGACCTCCATTATTTTAATACAGCTGATACAGTAAAGGATCGTGGACACTGTGCCAAACTACGCCACACTGTGGAAATAAGCTGACCCCTCCTTTTACGAACTATTAAAACGGCTGTTGCAACGAAAAGCTTCTCACAGGTTATCGCGTTGTGATTTCTTTTTCATCAATTACACTTAGCGAATTGTAATCATCTGCTGGTGGTGCCTGACCCATCTCCATGCTCGATGTGATGTACCTGGTTGACATGGAATCCGATTGGAAAAACGTTAATACCAGAAACGAAGCTGTTTAGGTAGCGTCCCTCCTAGTATCGAACGTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTCGG]
[-] EMBL BM623686 [AACTGTTTCAATGTTTTTAATACATTGACAATGTATTTATTTTTAATTAGAAAACTTTCCTTGAAAAGGACGATGGAAAAAACCGCAAGGTTGCCGACCGCTTGCACTAGGGTTTCTATGCTTCTAGGATAAATAATACGAATTTTTAGATACCTCTCACAAACGGACTCAATATTGAAAGCTGTTGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCGCAGAAGGGCAGAATGACCGCGATTAATGATGGTAGGAAGACGATGATCACGGGACGACCTCCATTATTTTAATACAGCTGATACAGTAAAGGATCGTGGACACTGTGCCAAACTACGCCACACTGTGGAAATAAGCTGACCCCTCCTTTTACGAACTATTAAAACGGCTGTTGCAACGAAAAGCTTCTCACAGGTTATCGCGTTGTGATTTCTTTTTCATCAATTACACTTAGCGAATTGTAATCATCTGCTGGTGGTGCCTGACCCATCTCCATGCTCGATGTGATGTACCTGGTTGACATGGAATCCGATTGGAAAAACGTTAATACCAGAAACGAAGCTGTTTAGGTAGCGTCCCTCCTAGTATCGAACGTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTCGG]
consensusID : consensus_9539#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence
[ATGTACCTTTAGGCAGTGCGCTGGATTAATCGCCGCAGATGACGCCTTTACTCGCCGGATGTGCCACAAGCCGCCAGCCGGGTACAGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTCCATTAATACACACGCAACCAGCTATCGCCTGGTTTTTAACGTTACTCTAGCTAATTTAGTAAGATTATTGATCATTTTAATAAACTTTAATAACACAACTGCAGCTTTCGTGGTGTAATATACGAGACGTCCTTTCAGTCGAGGCGCAAGAGAAAGACATTAAACT]
[-] EMBL AL933439 [ATGTACCTTTAGGCAGTGCGCTGGATTAATCGCCGCAGATGACGCCTTTACTCGCCGGATGTGCCACAAGCCGCCAGCCGGGTACAGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCAGTAAAATTCCATTAATACACACGCAACCAGCTATCGCCTGGTTTTTAACGTTACTCTAGCTAATTTAGTAAGATTATTGATCATTTTAATAAACTTTAATAACACAACTGCAGCTTTCGTGGTGTAATATACGAGACGTCCTTTCAGTCGAGGCGCAAGAGAAAGACATTAAACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9539#0 AACATGCTGTCTTTTTGTTTGTAATTTTTGTTTATAACACGTAACTATTTTTATTTCTGC 60
consensus_9539#2 ------------------------------------------------------------
consensus_9539#1 ------------------------------------------------------------
consensus_9539#0 GATGAGAGTTATCACAATATAAAAGAGGATCACCGAAGCATATCACACACTGGCGGTCGA 120
consensus_9539#2 ------------------------------------------------------------
consensus_9539#1 ------------------------------------------------------------
consensus_9539#0 TCGAGAGCGTTGATGACGTCCCCACTCATATCTCAATGATGTCAGAACGCTTTCATAAAC 180
consensus_9539#2 ------------------------------------------------------------
consensus_9539#1 ------------------------------------------------------------
consensus_9539#0 GGAAGCCATATTGAGAGCTGATGATTTTCTTCCATAAAAAGTTAGCGTCCTCTCAGTCAC 240
consensus_9539#2 ------------------------------------------------------------
consensus_9539#1 ------------------------------------------------------------
consensus_9539#0 AGAAGGGCAGAATATCCGCGATTAATGATGGTAGGAAGACGATGATCACGGGACGACCTC 300
consensus_9539#2 ------------------------------------------------------------
consensus_9539#1 ------------------------------------------------------------
consensus_9539#0 CATTATTTTAATACAGCTGATACAGTAAAGGATCGTGGACACTGTGCCAAACCACGCCAC 360
consensus_9539#2 ------------------------------------------------------------
consensus_9539#1 ------------------------------------------------------------
consensus_9539#0 GCTGTGGAAATAAGCTGTCCCCTCCTTTTACGAACTATTAAAACGGCTGTTGCAACGAAA 420
consensus_9539#2 ------------------------------------------------------------
consensus_9539#1 --------------------------------AACTGTTTCAATGTTTTTAATACATTGA 28
consensus_9539#0 AGCTTATCACAGGGTATCGCGTTGTGATTTCTTTCATCAATTACACTTAGCGAATTGTTA 480
consensus_9539#2 ------------------------------------------------------------
consensus_9539#1 CAATGTATTTATTTTTAATTAGAAAACTTTCCTTGAAAAGGACGATGGAAAAAACCGCAA 88
consensus_9539#0 TCATCTGCTGGTGGTGCCTGACCCATCTCCATGTTCGATGTGATGTACCTGGTTGACATC 540
consensus_9539#2 ------------------------------------------------------------
consensus_9539#1 GGTTGCCGACCGCTTGCACTAGGGTTTCTATGCTTCTAGGATAAATAATACGAATTTTTA 148
consensus_9539#0 GAATCCGATTGGAAAAACGTTAATACCAGAAATTAATCTGTTTAGGTAGCGTCCCTCCTA 600
consensus_9539#2 ------------------------------------------------------------
consensus_9539#1 GATACCTCTCACAAACGGACTCAATATTGAAAGCTGTTGATTTTCTTCCATAAAAAGTTA 208
consensus_9539#0 GTATCGAACGTAAGGCCTCGTGTATAAGAAAATTCGAACGCCATTCTCTTATCCTTGGAA 660
consensus_9539#2 ------------------------------------------------------------
consensus_9539#1 GCGTCCTCTCAGTCGCAGAAGGGCAGAATGACCGCGATTAATGATGGTAGGAAGACGATG 268
consensus_9539#0 TAATCGCCTACGGAGGCCTGTATATTTCCATGCCGATTCATGATGTACCTTGTGGCAGTG 720
consensus_9539#2 ------------------------------------------ATGTACCTTTAGGCAGTG 18
consensus_9539#1 ATCACGGGACGACCTCCATTATTTTAATACAGCTGATACAGTAAAGGATCGTGGACACTG 328
* * ** **
consensus_9539#0 CCGCTGGATTCAT-GCCGCAGATGACGCCTTTACCCGCCGGATGTGCCACAAGTAGCCAG 779
consensus_9539#2 C-GCTGGATTAATCGCCGCAGATGACGCCTTTACTCGCCGGATGTGCCACAAGCCGCCAG 77
consensus_9539#1 T-GCCAAACTA--CGCCACACTGTGGAAATAAGCTGACCCCTCCTTTTACGAACTATTAA 385
** * * *** ** * * ** * ** * *
consensus_9539#0 C-CGGGTGTTGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCA 838
consensus_9539#2 C-CGGGTACAGGGAACCACGCTACCACATGGTAGACGGAGCTTGGAGCTCATATTTTTCA 136
consensus_9539#1 AACGGCTGTTGCAACGAAAAGCTTCTCACAGGTTATCGCGTTGTGATTTCTTTTTCATCA 445
*** * * * * * ** * * * * * ** ** * ** ***
consensus_9539#0 GTAAAATTTCATTACAAATACACACGCAACTAGCTATCGCTTGGGTTTTAACGTTGCTCT 898
consensus_9539#2 GTAAAATTCCATT---AATACACACGCAACCAGCTATCGCCTGGTTTTTAACGTTACTCT 193
consensus_9539#1 ATTACACTTAGCGA--ATTGTAATCATCTGCTGGTGGTGCCTGACCCATCTCCATGCTCG 503
* * * * * * * * * * ** ** * * * ***
consensus_9539#0 AACTAATTTAATAAGAT--TATTGA--TCATTTTGATAAACTTTTATAACAACAATTTGG 954
consensus_9539#2 AGCTAATTTAGTAAGAT--TATTGA--TCATTTTAATAAACTTTAATAACA-CAACT--G 246
consensus_9539#1 ATGTGATGTACCTGGTTGACATGGAATCCGATTGGAAAAACGTTAATACCAGAAACGAAG 563
* * ** ** * * ** ** * ** * **** ** *** ** ** *
consensus_9539#0 CAGCTTTCGTGGTGTAATATACAAAAACGTCCTTCTCAGTCGGGGGCGCAAGAAAAAA-- 1012
consensus_9539#2 CAGCTTTCGTGGTGTAATATACGAGA-CGTCCTT-TCAGTCGAGG-CGCAAGAGAAA--- 300
consensus_9539#1 CTGTTTAGGTAGCGTCCCTCCTAGTATCGAACGT-AAGGCCTCGTGTATAAGAAAATTCG 622
* * ** ** * ** * ** * * * * * **** **
consensus_9539#0 GACATTTACGTAACC- 1027
consensus_9539#2 GACATTAAACT----- 311
consensus_9539#1 AACGCCATTCTCTCGG 638
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||