cluster # 9560

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Anopheles gambiae
cluster # 9560 cluster # 9560 Sequences # 18 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9560#0 length = 1886 sequences # 13

consensus_9560#1 length = 600 sequences # 5

consensusID : consensus_9560#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 1886
fasta sequence

                              [CCGCCCACGCGTCCGAGCGGCTGAACGTAGCGGACGTTGTTTTGTGAATCCTGGCGAATTGAACCACCGTACCACCAT-CCCCCTCTAATCTCTTCTCTTTAGTAATCATCACTTCATGTGAGAAATCAATGCGTGTAGAGTCAATGGGGTGCGAGTGAGAAGCGAGAAACTGCGAAGAAAATAGAAAGACAGCGAACGAGCAGTGTGCGTGCGTGTGTGCGTGTGTGTGGTGTTTTGTGTCGAGTGAAAAGTGCATTTCTTCTCGTGCGCCTGCCGTGGCGGAAGAGCACATCGCAGTAGACCTTTCCTTTGCTCAGTGTGTCTGCAGTGTTGGCCCCAAGCTGACGTCAGCGTGGTAAGGTGCGGTAACCCCC-TCCCCCCGAGAGAGAAAGACTACAAGACGCATCTTTATCCCCCAAAACACTTCGGCCCTTC--CGTGTGTGTGTGTTGTGTAAGTGTTGTCTCCAGCTGCAAGAAAGTGACCCCAAAATCCACAGTGACGGAT-AAAAAAAAAACATTCCACAACCGGTTTTTGTTTTATGCTCCACCATCATCATCATCGCCACCACCCCACTGGGGAATGTCGGAAAGTGAATAAACAGACACAGCGTGGAGAAATCAACATTTGGCGCTCTTCGCAAACAGCGATAACGAAAAGAAATAGCGAAACGCACATTAACACCGATTGTCGATCGGTGGACGTGG-AAAAGTAACAAAATTCGTAGCTACTACTACCGTTTGGAGGTACGGTTGTCATCATCATCACCATCGCAACCTCCTTCTCCGCCTATGAGCAGGCTACAGTGAGGGACAGAAAAACAAAGCAACAACACGAACTGCTGCCGAGTATTGTGTGCCGGC-TTTTTTCGACACAGCCACAACAAATCACAAC-CGTCACAGGCCGCTAGTATGTCGCTGTTCAATTTGGCACGGTTTGGCGTTGGTGTGGCGCTGGAGGCGGCCATCACACGTACGGCCGCTCCGATGACTGCCACCTCCGGGGTGCTGCAGGTGCGCCGCTCCATCTCCAAGAGCAGCGAGGTGAACAATTCCGACTTCATGACGATCCGGACGGAAAATCAGAACCATCCGCACCACCATCAGAAGGGCAGCAGCCGCAACTGCGACAGCAAGCAACAGATAAGACTGAAGAAGGTGTCGAGGACACTCTCGACGCTAAACTCCTCCGTACCGGAGGCGGCCACACAGACGGCCGTACCGAAGAGCGAGAGTCGCGAGTTTATGGCCGTCTTTCCGGACGTGGTGCGCGATCTGACCGCTTACGCCAGCAAGTACGACAAGAACGTGGCGACCAAATGGTTCGTGAAGGCACTGCAGTACAACGTGCCCCAGGGCAAGAAGAACCGCGGGCTTGCCTGCGTGCTGGCGTACCGGATGTTGGCCCGGTCGGAAGACTTGACGCCGGAGAACATCCGCCGGGCCCAGTATCTGGGCTGGGCAATTGAGATGCTTCACTCGATGTTCCTGATCATGGACGACGTTATGGACGGAAGCGTGACACGCCGTGGCCAACCGTGCTGGCACACGCTGGACGATGTGAAGCTGTCGGGCGTCAACGATGCCATCATGATCGAGGCAGCCATCGCGCACCTGGTCAAGATACAGTACGGCAACGAGCCGTACTATCCGCGGCTGCTGGAGCTGTTTAACGAGATGAAGTTCATCACGACCATCGGCCAATCGCTGGATCTGCGCTCGGCCAAGCTCGATGTGACCGACTACTCGATGGATCTGTACAAATCGATCGTGTTCCACAAAACGGCCTACTACACGTTCTACCTCCCGGTTGCCATGGNCATGCACCTTACTGGCTATACCGATCCGGAGATGTTCCGGCAGGCGAAAACGATTCTGCTCGAGATTGG]

[+] EMBL BM591734             [CCGCCCACGCGTCCGAGCGGCTGAACGTAGCGGACGTTGTTTTGTGAATCTTGGCAAACTGAACCACCGTACCACCAT CCCCCTCTAATCGCTTCTCTTTAGTAATCATCACTTCATGTGAGAAATCAATGCGTGTAGAGTCAATGGGGTGCGAGTGAGAAGCGAGAAACTGCGAAGAAAATAGAAAGACAGCGAGCGTGCAGTGTGCGTGCGT      GTGTGTGCGGTGTTTTGTGTCGAGTGAAAAGTGCATTTCTTCTCGTGCGCCTGCCGTGGCGGAAGAGCACATCGCAGTAGACCTTTCCTTTGCTCAGTGTGTCTGCAGTGTTGGCCCCAAGCTGACGTCAGCGTGGTAAGGTGCGGTAACCCCCTTCCCCCCGAGAGAGAAAGACTACAAGACGCATCTTTATCCCCCAAAACACTTCGGCCCTTC  CGTGTGTGTGTGTTGTGTAAGTGTTGTCTCCAGCTGCAAGAAAGTGACCCCAAAATCCACAGTGACGGAT   AAAAAAAACATTCCACAACCGGTTTTTGCTTTATGCTCCACCATCATCATCACCGCCACCACCCCACTGGGGAATGTCGGAAAGTGAATAAACAGACACAGCGTGGAGAAATCAACATTTGGCGCTCTTCGCAAACAGCGATAACGAAAAGAAATAGCGAAACGCACATTAACACCGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BM617440             [            CCGAGCGGCTGAACGTAGCGGACGTTGTTTTGTGAATCTTGGCAAACTGAACCACCGTACCACCAT CCCCCTCTAATCGCTTCTCTTTAGTAATCATCACTTCATGTGAGAAATCAATGCGTGTAGAGTCAATGGGGTGCGAGTGAGAAGCGAGAAACTGCGAAGAAAATAGAAAGACAGCGAGCGTGCAGTGTGCGTGCGT      GTGTGTGCGGTGTTTTGTGTCGAGTGAAAAGTGCATTTCTTCTCGTGCGCCTGCCGTGGCGGAAGAGCACATCGCAGTAGACCTTTCCTTTGCTCAGTGTGTCTGCAGTGTTGGCCCCAAGCTGACGTCAGCGTGGTAAGGTGCGGTAACCCCCTTCCCCCCGAGAGAGAAAGACTACAAGACGCATCTTTATCCCCCAAAACACTTCGGCCCTTC  CGTGTGTGTGTGTTGTGTAAGTGTTGTCTCCAGCTGCAAGAAAGTGACCCCAAAATCCACAGTGACGGAT  AAAAAAAAACATTCCACAACCGGTTTTTGCTTTATGCTCCACCATCATCATCACCGCCACCACCCCACTGGGGAATGTCGGAAAGTGAATAAACAGACACAGCGTTGAGAAATCAACATTTGGCGCTCTTCGCAAACAGCGATAACGAAAAGAAATAGCGAAACGCACATTAACACCGATTGTCGATCGGTGGACGTGGAAAAAGTAACAAAATT  TCGCTGCTACTACCGTTTGGgag                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM589043             [            CCGAGCGGCTGAACGTAGCGGACGTTGTTTTGTGAATCCTGGCGAATTGAACCACCGTACCACCAT CCCCCTCTAATCTCTTCTCTTTAGTAATCATCACTTCATGTGAGAAATCAATGCGTGTATAGTCAATGGGGTGCGAGTGAGAAGCGAGAAACTGCGAAGAAAATAGAAAGACAGCGAACGAGCAGTGTGCGTGCGTGTGTGCGTGTGTGTGGTGTTTTGTGTCGAGTGAAAAGTGCATTTCTTCTCGTGCGCCTGCCGTGGCGGAAGAGCACATCGCAGTAGACCTTTCCTTTGCTCAGTGTGTCTGCAGTGGTGGCCCCAAGCTGACGTCAGCGTGGTAAAGTGCGGGAACCCCC TCCCCCCGAGAGAGAAAGACTACAAGACGCATCTTTATCCCCCAAAATACTTCGGCCCTTC  C  GTGTGTGTGTTGTGTAAGTGTTGTCTCCAGCTGCAAGAAAGTGACCCCAAAATCCACAGTGACGGAT AAAAAAAAAACATTCCACAACCGGTTTTTGTTTTATGCTCCACCATCATCATCATCGCCACCACCCCACTGGGGAATGTCGGAAAGTGAATAAACAGACGCAGCGTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM641853             [                cCGGCTGAACGTAGCGGACGTTGTTTTGTGAATCCTGGCGAATTGAACCACCGTACCACCAT CCCCCTCTAATCTCTTCTCTTTAGTAATCATCACTTCATGTGAGAAATCAATGCGTGTAGAGTCAATGGGGTGCGAGTGAGAAGCGAGAAACTGCGAAGAAAATAGAAAGACAGCGAACGAGCAGTGTGCGTGCGTGTGTGCGTGTGTGTGGTGTTTTGTGTCGAGTGAAAAGTGCATTTCTTCTCGTGCGCCTGCCGTGGCGGAACAGCACATCGCAGTAGACCTTTCCTTTGCTCAGTGTGTCTGCAGTGTTGGCCCCAAGCTGACGTCAGCGTGGTAAAGTGCGGTAACCCCC TCCCCCCGAGAGAGAAAGACTACAAGACGCATCTTTATCCCCCAAAATACTTCGGCCCTTC  C  GTGTGTGTGTTGTGTAAGTGTTGTCTCCAGCTGCAAGAAAGTGACCCCAAAATCCACAGTGACGGAT AAAAAAAAAACATTCCACAACCGGTTTTTGTTTTATGCTCCACCATCATCATCATCGCCACCACCCCACTGGGGAATGTCGGAAAGTGAATAAACAGACACAGCGTGGAGAAATCAACATTTGGCGCTCTTCGCAAACGGCGATAACAAAAAGAAATAGCGAAACGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BM601186             [                            ccgGGACGTTGTTTTGTGAATCCTGGCGAATTGAACCACCGTACCACCATCCCCCCTCTAATCTCTTCTCTTTAGTAATCATCACTTCATGTGAGAAATCAAT  GTGTAGAGTCAATGGGGTGCGAGTGAGAAGCGAGAAACTGCGAAGAAAATAGAAAGACAGCGAACGAGCAGTGTGCGTGCGTGTGTGCGTGTGTGTGGTGTTTTGTGTCGAGTGAAAAGTGCATTTCTTCTCGTGCGCCTGCCGTGGCGGAAGAGCACATCGCAGTAGACCTTTCCTTTGCTCAGTGTGTCTGCAGTGTTGGCCCCAAGCTGACGTCAGCGTGGTAAGGTGCGGTAACCCCC TCCCCCTGAGAGAGAAAGACTACAAGACGCATCTTTATCCCCCAAAACACTTCGGCCCTTCCGCGTGTCTGTGTGTTGTGTAAGTGTTGTCTCCAACTGCAAGAAAGTGACCCCAAAATCCACAGTGACGGAT AAAAAAAAAACATTCCACAACCGGTTTTTGTTTTATGCTCCACCACCATCATCATCGCCACCACCCCACTGGGGAATGTCGGAAAGTGAATAAACAGACACAGCGTGGAGAAATCAACATTTGGCGCTCTTCGCAAACAGCGATAACGAAAAGAAATAGCGAAACGCACATTAACACCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BM633486             [                                                                                                                                                                                        ccgAGACAGCGAACGAGCAGTGTGCGTGCGTGTGTGCGTGTGTGTGGTGTTTTGTGTCGAGTGAAAAGTGCATTTCTTCTCGTGCGCCTGCCGTGGCGGAAGAGCACATCGCAGTAGACCTTTCCTTTGCTCAGTGTGTCTGCAGTGTTGGCCCCAAGCTGACGTCAGCGTGGTAAGGTGCGGTAACCCCC TCCCCCTGAGAGAGAAAGACTACAAGACGCATCTTTATCCCCCAAAACACTTCGGCCCTTCCGCGTGTCTGTGTGTTGTGTAAGTGTTGTCTCCAACTGCAAGAAAGTGACCCCAAAATCCACAGTGACGGAT AAAAAAAAAACATTCCACAACCGGTTTTTGTTTTATGCTCCACCACCATCATCATCGCCACCACCCCACTGGGGAATGTCGGAAAGTGAATAAACAGACACAGCGTGGAGAAATCAACATTTGGCGCTCTTCGCAAACAGCGATAACGAAAAGAAATAGCGAAACGCACATTAACACCGATTGTCGATCGGTGGACGTGG AAAAGTAACAAAATTC   GCTGCTACTACCGTTTGGAGGTACGGTTGTCATCATCATCACCATCGCAACCTCCTTCTCCGCCTATGAGCAGGCTACAGTGAGGGACAGAAAAACAAAGCAACAACACGAACTGCTGCCGAGTATTGTGTGCCGGC TTTTTTCGACACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM585905             [                                                                                                                                                                                                               cCGTGCGTGTGTGCGTGTGTGTGGTGTTTTGTGTCGAGTGAAAAGTGCATTTCTTCTCGTGCGCCTGCCGTGGCGGAAGAGCACATCGCAGTAGACCTTTCCTTTGCTCAGTGTGTCTGCAGTGTTGGCCCCAAGCTGACGTCAGCGTGGTAAAGTGCGGTAACCCCC TCCCCCCGAGAGAGAAAGACTACAAGACGCATCTTTATCCCCCAAAATACTTCGGCCCTTC  C  GTGTGTGTGTTGTGTAAGTGTTGTCTCCAGCTGCAAGAAAGTGACCCCAAAATCCACAGTGACGGAT AAAAAAAAAACATTCCACAACCGGTTTTTGTTTTATGCTCCACCATCATCATCATCGCCACCACCCCACTGGGGAATGTCGGAAAGTGAATAAACAGACACAGCGTGGAGAAATCAACATTTGGCGCTCTTCGCAAACGGCGATAACAAAAAGAAATAGCGAAACGCACATTAACACCGATTGTCGATCGGTGGACGTGG AAAAGTAACAAAATTCGTAGCTACTACTACCGTTTGGAGGTACGGTTGTCATCATCATCAGCATCGCAACCTCCTTCTCCGCCTATGAGCAGGCTACAGTGAGGGACAGAAAAACAAAGCAACAACAAGAACTGCTGCCGAGTATTGTGTGCCGGC TTTTTTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM657479             [                                                                                                                                                                                                                                                                                                                                                                                                ccgGAGAAAGACTACAAGACGCATCTTTATCCCCCAAAATACTTCGGCCCTTC  C  GTGTGTGTGTTGTGTAAGTGTTGTCTCCAGCTGCAAGAAAGTGACCCCAAAATCCACAGTGACGGATAAAAAAAAAAACATTCCACAACCGGTTTTTGTTTTATGCTCCACCATCATCATCATCGCCACCACCCCACTGGGGAATGTCGGAAAGTGAATAAACAGACACAGCGTGGAGAAATCAACATTTGGCGCTCTTCGCAAACGGCGATAACAAAAAGAAATAGCGAAACGCACATTAACACCGATTGTCGATCGGTGGACGTGG AAAAGTAACAAAATTCGTAGCTACTACTACCGTTTGGAGGTACGGTTGTCATCATCATCAGCATCGCAACCTCCTTCTCCGCCTATGAGCAGGCTACAGTGAGGGACAGAAAAACAAAGCAACAACAAGAACTGCTGCCGAGTATTGTGTGCCGGC TTTTTTCGACACAGCCACAACAAATCACAAC CGTCACAGGCCGCTAGTATGTCGCTGTTCAATTTGGCACGGTTTGGCGTTGGTGTGGCGCTGGAGGCGGCCATCACACGTACGGCCGCTCCGATGACTGCCACCTCCGGGGTGCTGCAGGTGCGCCGCTCCATCTCCAAGAGCAGCGAGGTGAACAATTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BX621635             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AATCAACATTTGGCGCTCTTCGCAAACAGCGATAACGAAAAGAAATAGCGAAACGCACATTAACACCGATTGTCGATCGGTGGACGTGG AAAAGTAACAAAATTCGTAGCTACTACTACCGTTTGGAGGTACGGTTGTCATCATCATCACCATCGCAACCTCCTTCTCCGCCTATGAGCAGGCTACAGTGAGGGACAGAAAAACAAAGCAACAACACGAACTGCTGCTGAGTATTGTGTGCCGGC TTTTTTCGACACAGCCACAACAAATCACAACAAGTCACAGGCCGCCAGTATGTCGCTGTTCAATTTGGCACGGTTTGGCGTTGGTGTGGCGCTGGAGGCGGCCATCACACGTACGGCCGCTCCGATCACCGCTACCTCCGGTGTGGTACAGCTGCGCCGCTCCATCTCCAAGAGCAGCGAGGTGAACAATTCCGACTTCATGACGATCCGGACGGAAAATCAGAACCATCCGCACCACCATCAGAAGGGCAGCAGCCGCAACTGCGACAGCAAGCAACAGATAAGACTGAAGAAGGTGTCGAGGACACTCTCGACGCTAAACTCCTCCGTACCGGAGGCGGCCACACAGACGGCCGTACCGAAGAGCGAGAGTCGCGAGTTTATGGCCGTCTTTCCGGACGTGGTGCGCGATCTGACCGCTTACGCCAGCAAGTACGACAAGAACGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL AGA283650            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CATTAACACCGATTGTCGATCGGTGGACGTGG AAAAGTAACAAAATTCGTAGCTACTACTACCGTTTGGAGGTACGGTTGTCATCATCATCACCATCGCAACCTCCTTCTCCGCNTATGAGCAGGCTACAGTGAGGGACAGAAAAACAAAGCAACAACACGAACTGCTGCTGAGTATTGTGTGCCGGC TTTTTTCGACACAGCCACAACAAATCACAACAAGTCACAGGCCGCCAGTATGTCGCTGTTCAATTTGGCACGGTTTGGCGTTGGTGTGGCGCTGGAGGCGGCCATCACACGTACGGCCGCTCCGATCACCGCTACCTCCGGTGTGGTACAGCTGCGCCGCTCCATCTCCAAGAGCAGCGAGGTGAACAATTCCGACTTCATGACGATCCGGACGAAAAAaaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BM627283             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ccgGTGCCGGCTTTTTTTCGACACAGCCACAACAAATCACAAC CGTCACAGGCCGCTAGTATGTCGCTGTTCAATTTGGCACGGTTTGGCGTTGGTGTGGCGCTGGAGGCGGCCATCACACGTACGGCCGCTCCGATGACTGCCACCTCCGGGGTGCTGCAGGTGCGCCGCTCCATCTCCAAGAGCAGCGAGGTGAACAATTCCGACTTCATGACGATCCGGACGGAAAATCAGAACCATCCGCACCACCATCAGAAGGGCAGCAGCCGCAACTGCGACAGCAAGCAACAGATAAGACTGAAGAAGGTGTCGAGGACACTCTCGACGCTAAACTCCTCCGTACCGGAGGCGGCCACACAGACGGCCGTACCGAAGAGCGAAAGTCGCGAGTTTATGGCCGTCTTTCCGGACGTGGTGCGCGATCTGACCGCTTACGCCAGCAAGTACGACAAGAACGTGGCGACCAAATGGTTCGTGAAGGCACTGCAGTACAACGTGCCCCAGGGCAAGAAGAACCGCGGGCTTGCCTGCGTGCTGGCGTACCGGATGTTGGCCCGGTCGGAAGACTTGACGCCGGAGAACATCCGCCGGGCCCAGTATCTGGGCTGGGCGATTGAGATGCTTCACTCGATGTTCCTGATCATGGACGACGTTATGGACGGAAGCGTGACACGCCGTGGCCAA                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BX621137             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ACTTCATGACGATCCGGACGGAAAATCAGAACCATCCGCACCACCATCAGAAGGGCAGCAGCCGCAACTGCGACAGCAAGCAACAGATAAGACTGAAGAAGGTGTCGAGGACACTCTCGACGCTAAACTCCTCCGTACCGGAGGCGGCCACACAGACGGCCGTACCGAAGAGCGAGAGTCGCGAGTTTATGGCCGTCTTTCCGGACGTGGTGCGCGATCTGACCGCTTACGCCAGCAAGTACGACAAGAACGTGGCGACCAAATGGTTCGTGAAGGCACTGCAGTACAACGTGCCCCAGGGCAAGAAGAACCGCGGGCTTGCCTGCGTGCTGGCGTACCGGATGTTGGCCCGGTCGGAAGACTTGACGCCGGAGAACATCCGCCGGGCCCAGTATCTGGGCTGGGCAATTGAGATGCTTCACTCGATGTTCCTGATCATGGACGACGTTATGGACGGAAGCGTGACACGCCGTGGCCAACCGTGCTGGCACACGCTGGACGATGTGAAGCTGTCGGGCGTCAACGATGCCATCATGATCGAGGCAGCCATCGCGCACCTGGTCAAGATACAGTACGGCAACGAGCCGTACTATCCGCGGCTGCTGGAGCTGTTTAACGAGATGAAGTTCATCACGACCATCGGCCAATCGCTGGATCTGCGCTCGGCCAAGCTCGATGTGACCGACTACTCGATGGATCTGTACAAATCGATCGTGTTCCACAAAACGGCCTACTACACGTTCTACCTCCCGGTTGCCATGGNCATGCACCTTACTGGCTATACCGATCCGGAGATGTTCCGGCAGGCGAAAACGATTCTGCTCGAGATTGG]
[+] EMBL BM634134             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       cCGGAAAATCAGAACCATCCGCACCACCATCAGAAGGGCAGCAGCCGCAACTGCGACAGCAAGCAACAGATAAGACTGAAGAAGGTGTCGAGGACACTCTCGACGCTGAACTCCTCCGTACCGGAGGCGGCCACACAGACGGCCGTACCGAAGAGCGAGAGTCGCGAGTTTATGGCCGTCTTTCCCGACGTGGTACGCGATCTGACCGCTTACGCCAGCAAGTACGACAAGAACGTGGCGACCAAATGGTTCGTGAAGGCACTGCAGTACAACGTGCCCCAGGGCAAGAAGAACCGCGGGCTTGCCTGCGTGCTGGCGTACCGGATGTTGGCCCGGTCGGAAGACTTGACGCCGGAGAACATCCGCCGGGCCCAGTATCTGGGCTGGGCAATTGAGATGCTTCACTCGATGTTCCTGATCATGGACGACGTTATGGACGGAAGCGTGACACGCCGTGGCCAACCGTGCTGGCACACGCTGGACGATGTGAAGCTGTCGGGCGTCAACGATGCCATCATGATCGAGGCAGCCATCGCGCACCTGGTCAAGATACAGTACGGCAACGAGCCGTACTATCCGCGGCTGCTGGAGCTGTTTAACGAGATGAAGTTCATCACGACCATCGGCCAATCGCTGGATCTGCGCTCGGCCAAGCTCGATGTGACCGACTACTCGATGGATCTGTACAAAT                                                                                                                            ]




>consensus_9560#0
CCGCCCACGCGTCCGAGCGGCTGAACGTAGCGGACGTTGTTTTGTGAATCCTGGCGAATT
GAACCACCGTACCACCATCCCCCTCTAATCTCTTCTCTTTAGTAATCATCACTTCATGTG
AGAAATCAATGCGTGTAGAGTCAATGGGGTGCGAGTGAGAAGCGAGAAACTGCGAAGAAA
ATAGAAAGACAGCGAACGAGCAGTGTGCGTGCGTGTGTGCGTGTGTGTGGTGTTTTGTGT
CGAGTGAAAAGTGCATTTCTTCTCGTGCGCCTGCCGTGGCGGAAGAGCACATCGCAGTAG
ACCTTTCCTTTGCTCAGTGTGTCTGCAGTGTTGGCCCCAAGCTGACGTCAGCGTGGTAAG
GTGCGGTAACCCCCTCCCCCCGAGAGAGAAAGACTACAAGACGCATCTTTATCCCCCAAA
ACACTTCGGCCCTTCCGTGTGTGTGTGTTGTGTAAGTGTTGTCTCCAGCTGCAAGAAAGT
GACCCCAAAATCCACAGTGACGGATAAAAAAAAAACATTCCACAACCGGTTTTTGTTTTA
TGCTCCACCATCATCATCATCGCCACCACCCCACTGGGGAATGTCGGAAAGTGAATAAAC
AGACACAGCGTGGAGAAATCAACATTTGGCGCTCTTCGCAAACAGCGATAACGAAAAGAA
ATAGCGAAACGCACATTAACACCGATTGTCGATCGGTGGACGTGGAAAAGTAACAAAATT
CGTAGCTACTACTACCGTTTGGAGGTACGGTTGTCATCATCATCACCATCGCAACCTCCT
TCTCCGCCTATGAGCAGGCTACAGTGAGGGACAGAAAAACAAAGCAACAACACGAACTGC
TGCCGAGTATTGTGTGCCGGCTTTTTTCGACACAGCCACAACAAATCACAACCGTCACAG
GCCGCTAGTATGTCGCTGTTCAATTTGGCACGGTTTGGCGTTGGTGTGGCGCTGGAGGCG
GCCATCACACGTACGGCCGCTCCGATGACTGCCACCTCCGGGGTGCTGCAGGTGCGCCGC
TCCATCTCCAAGAGCAGCGAGGTGAACAATTCCGACTTCATGACGATCCGGACGGAAAAT
CAGAACCATCCGCACCACCATCAGAAGGGCAGCAGCCGCAACTGCGACAGCAAGCAACAG
ATAAGACTGAAGAAGGTGTCGAGGACACTCTCGACGCTAAACTCCTCCGTACCGGAGGCG
GCCACACAGACGGCCGTACCGAAGAGCGAGAGTCGCGAGTTTATGGCCGTCTTTCCGGAC
GTGGTGCGCGATCTGACCGCTTACGCCAGCAAGTACGACAAGAACGTGGCGACCAAATGG
TTCGTGAAGGCACTGCAGTACAACGTGCCCCAGGGCAAGAAGAACCGCGGGCTTGCCTGC
GTGCTGGCGTACCGGATGTTGGCCCGGTCGGAAGACTTGACGCCGGAGAACATCCGCCGG
GCCCAGTATCTGGGCTGGGCAATTGAGATGCTTCACTCGATGTTCCTGATCATGGACGAC
GTTATGGACGGAAGCGTGACACGCCGTGGCCAACCGTGCTGGCACACGCTGGACGATGTG
AAGCTGTCGGGCGTCAACGATGCCATCATGATCGAGGCAGCCATCGCGCACCTGGTCAAG
ATACAGTACGGCAACGAGCCGTACTATCCGCGGCTGCTGGAGCTGTTTAACGAGATGAAG
TTCATCACGACCATCGGCCAATCGCTGGATCTGCGCTCGGCCAAGCTCGATGTGACCGAC
TACTCGATGGATCTGTACAAATCGATCGTGTTCCACAAAACGGCCTACTACACGTTCTAC
CTCCCGGTTGCCATGGNCATGCACCTTACTGGCTATACCGATCCGGAGATGTTCCGGCAG
GCGAAAACGATTCTGCTCGAGATTGG

consensusID : consensus_9560#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 600
fasta sequence

                              [CCGAGAAAAGCAGATGCCTCGTGGAAGCAGCTCGCATTTGTTTTCAAGCGACTGAACGTATCGGACGTTGTTTTGTGAATCCTGGCGAATTGAACCACCGTACCACCATCCCCCCTCTAATCTCTTCTCTTTAGTAATCATCACTTCATGTGAGAAATCAA--TGTGTAGAGTCAATGGGGTGCGAGTGAGAAGCGAGAAACTGCGAAGAAAATAGAAAGACAGCGAACGAGCAGTGTGCGTGCGTGTGTGCGTGTGTGTGGTGTTTTGTGTCGAGTGAAAAGTGCATTTCTTCTCGTGCGCCTGCCGTGGCGGAAGAGCACATCGCAGTAGACCTTTCCTTTGCTCAGTGTGTCTGCAGTGTTGGCCCCAAGCTGACGTCAGCGTGGTAAGGTGCGGTAACCCCCTCCCCCTGAGAGAGAAAGACTACAAGACGCATCTTTATCCCCCAAAACACTTCGGCCCTTCCGCGTGTCTGTGTGTTGTGTAAGTGTTGTCTCCAACTGCAAGAAAGTGACCCCAAAATCCACAGTGACGGATAAAAAAAAAACATTCCACAACCGGTTTTTGTTTTATGCTCCACCACCATCATCATCATCATCA]

[+] EMBL BM649074             [CCGAGAAAAGCAGATGCCTCGTGGAAGCAGCTCGCATTTGTTTTCAAGCGACTGAACGTATCGGACGTTGTTTTGTGAATCCTGGCGAATTGAACCACCGTACCACCATCCCCCCTCTAATCTCTTCTCTTTAGTAATCATCACTTCATGTGAGAAATCAA  TGTGTAGAGTCAATGGGGTGCGAGTGAGAAGCGAGAAACTGCGAAGAAAATAGAAAGACAGCGAACGAGCAGTGTGCGTGCGTGTGTGCGTGTGTGTGGTGTTTTGTGTCGAGTGAAAAGTGCATTTCTTCTCGTGCGCCTGCCGTGGCGGAAGAGCACATCGCAGTAGACCTTTCCTTTGCTCAGTGTGTCTGCAGTGTTGGCCCCAAGCTGACGTCAGCGTGGTAAGGTGCGGTAACCCCCTCCCCCTGAGAGAGAAAGACTACAAGACGCATCTTTATCCCCCAAAACACTTCGGCCCTTCCGCGTGTCTGTGTGTTGTGTAAGTGTTGTCTCCAACTGCAAGAAAGTGACCCCAAAATCCACAGTGACGGATAAAAAAAAAACATTCCACAACCGGTTTTTGTTTTATGCTCCACCACCATCATCA         ]
[+] EMBL AGA280882            [                               ttttATTTGTTTTCAAGCGGCTGAACGTAGCGGACGTTGTTTTGTGAATCCTGGCGAATTGAACCACCGTACCACCATCCCCCCTCTAA  GCTTCTCTTTAGTAATCATCACTTCATGTGAGAAATCAACGCGTGTAGAGTCAATGGGGTGCAAGTGAGAAGCTAGAAACTGCGAAGAAAATAGAAAGACAGCGAGCGAGCAGTGTGCGTGCGTGTGTGCGTGTGTGTGGTGTTTTGTGTCGAGTGAAAAGTGCATTTCTTCTCGTGCGCCTGCCGTGGCGGAAGAGCACATCGCAGTAGACCTTTCCTTTGCTCAGTGTGTCTGCAGTGTTGGCCCCAAGCTGACGTCAGCGTGGTAAGGTGCGGTAACCCCCTCCCCC GCGAGAG  AGA    AAGACCCATCTTTATCCCCCAAAACACTTCGGCCCTTCCGCGTGTCTGTGTGTTGTGTAAGTGTTGTCTCCATCTGCAAGAAAGTGACCCCAAAATCCACAGTGACGGATAAAAAAAAAACATTCCACAACCGGTTTTTGTTTTATGCTCCACCACCACCATCATCATCATCA]
[+] EMBL BM627807             [                                              ccgGACTGAACGTATCGGACGTTGTTTTGTGAATCCTGGCGAATTGAACCACCGTACCACCATCCCCCCTCTAATCTCTTCTCTTTAGTAATCATCACTTCATGTGAGAAATCAA  TGTGTAGAGTCAATGGGGTGCGAGTGAGAAGCGAGAAACTGCGAAGAAAATAGAAAGACAGCGAACGAGCAGTGTGCGTGCGTGTGTGCGTGTGTGTGGTGTTTTGTGTCGAGTGAAAAGTGCATTTCTTCTCGTGCGCCTGCCGTGGCGGAAGAGCACATCGCAGTAGACCTTTCCTTTGCTCAGTGTGTCTGCAGTGTTGGCCCCAAGCTGACGTCAGCGTGGTAAGGTGCGGTAACCCCCTCCCCCTGAGAGAGAAAGACTACAAGACGCATCTTTATCCCCCAAAACACTTCGGCCCTTCCGCGTGTCTGTGTGTTGTGTAAGTGTTGTCTCCAACTGCAAGAAAGTGACCCCAAAATCCACAGTGACGGATAAAAAAAAAACATTCCACAACCGGTTTTTGTTTTATGCTCCACCACCATCATCATCgccacc ]
[+] EMBL BM650564             [                                                ccgCTGAACGTATCGGACGTTGTTTTGTGAATCCTGGCGAATTGAACCACCGTACCACCATCCCCCCTCTAATCTCTTCTCTTTAGTAATCATCACTTCATGTGAGAAATCAA  TGTGTAGAGTCAATGGGGTGCGAGTGAGAAGCGAGAAACTGCGAAGAAAATAGAAAGACAGCGAACGAGCAGTGTGCGTGCGTGTGTGCGTGTGTGTGGTGTTTTGTGTCGAGTGAAAAGTGCATTTCTTCTCGTGCGCCTGCCGTGGCGGAAGAGCACATCGCAGTAGACCTTTCCTTTGCTCAGTGTGTCTGCAGTGTTGGCCCCAAGCTGACGTCAGCGTGGTAAGGTGCGGTAACCCCCTCCCCCTGAGAGAGAAAGACTACAAGACGCATCTTTATCCC                                                                                                                                                           ]
[+] EMBL AGA284938            [                                                                                                                      ctaagCTTCTCTTTAGTAATCATCACTTCATGTGAGAAATCAACGCGTGTAGAGTCAATGGGGTGCAAGTGAGAAGCTAGAAACTGCGAAGAAAATAGAAAGACAGCGAGCGAGCAGTGTGCGTGCGTGTGTGCGTGTGTGTGGTGTTTTGTGTCGAGTGAAAAGTGCATTTCTTCTCGTGCGCCTGCCGTGGCGGAAGAGCACATCGCAGTAGACCTTTCCTTTGCTCAGTGTGTCTGCAGTGTTGGCCCCAAGCTGACGTCAGCGTGGTAAGGTGCGGTAACCCCCTCCCCC GCGAGAG  AGA    AAGACCCATCTTTATCCCCCAAAACACTTCGGCCCTTCCGCGTGTCTGTGTGTTGTGTAAGTGTTGTCTCCATCTGCAAGAAAGTGACCCCAAAATCCACAGTGACGGATAAAAAAAA                                                       ]




>consensus_9560#1
CCGAGAAAAGCAGATGCCTCGTGGAAGCAGCTCGCATTTGTTTTCAAGCGACTGAACGTA
TCGGACGTTGTTTTGTGAATCCTGGCGAATTGAACCACCGTACCACCATCCCCCCTCTAA
TCTCTTCTCTTTAGTAATCATCACTTCATGTGAGAAATCAATGTGTAGAGTCAATGGGGT
GCGAGTGAGAAGCGAGAAACTGCGAAGAAAATAGAAAGACAGCGAACGAGCAGTGTGCGT
GCGTGTGTGCGTGTGTGTGGTGTTTTGTGTCGAGTGAAAAGTGCATTTCTTCTCGTGCGC
CTGCCGTGGCGGAAGAGCACATCGCAGTAGACCTTTCCTTTGCTCAGTGTGTCTGCAGTG
TTGGCCCCAAGCTGACGTCAGCGTGGTAAGGTGCGGTAACCCCCTCCCCCTGAGAGAGAA
AGACTACAAGACGCATCTTTATCCCCCAAAACACTTCGGCCCTTCCGCGTGTCTGTGTGT
TGTGTAAGTGTTGTCTCCAACTGCAAGAAAGTGACCCCAAAATCCACAGTGACGGATAAA
AAAAAAACATTCCACAACCGGTTTTTGTTTTATGCTCCACCACCATCATCATCATCATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9560#0      -------------------------------CCGCCCACGCGTCCGAGCGGCTGAACGTA 29
consensus_9560#1      CCGAGAAAAGCAGATGCCTCGTGGAAGCAGCTCGCATTTGTTTTCAAGCGACTGAACGTA 60
                                                      ***    *  * * **** *********

consensus_9560#0      GCGGACGTTGTTTTGTGAATCCTGGCGAATTGAACCACCGTACCACCATCCCCC-TCTAA 88
consensus_9560#1      TCGGACGTTGTTTTGTGAATCCTGGCGAATTGAACCACCGTACCACCATCCCCCCTCTAA 120
                       ***************************************************** *****

consensus_9560#0      TCTCTTCTCTTTAGTAATCATCACTTCATGTGAGAAATCAATGCGTGTAGAGTCAATGGG 148
consensus_9560#1      TCTCTTCTCTTTAGTAATCATCACTTCATGTGAGAAATCAATG--TGTAGAGTCAATGGG 178
                      *******************************************  ***************

consensus_9560#0      GTGCGAGTGAGAAGCGAGAAACTGCGAAGAAAATAGAAAGACAGCGAACGAGCAGTGTGC 208
consensus_9560#1      GTGCGAGTGAGAAGCGAGAAACTGCGAAGAAAATAGAAAGACAGCGAACGAGCAGTGTGC 238
                      ************************************************************

consensus_9560#0      GTGCGTGTGTGCGTGTGTGTGGTGTTTTGTGTCGAGTGAAAAGTGCATTTCTTCTCGTGC 268
consensus_9560#1      GTGCGTGTGTGCGTGTGTGTGGTGTTTTGTGTCGAGTGAAAAGTGCATTTCTTCTCGTGC 298
                      ************************************************************

consensus_9560#0      GCCTGCCGTGGCGGAAGAGCACATCGCAGTAGACCTTTCCTTTGCTCAGTGTGTCTGCAG 328
consensus_9560#1      GCCTGCCGTGGCGGAAGAGCACATCGCAGTAGACCTTTCCTTTGCTCAGTGTGTCTGCAG 358
                      ************************************************************

consensus_9560#0      TGTTGGCCCCAAGCTGACGTCAGCGTGGTAAGGTGCGGTAACCCCCTCCCCCCGAGAGAG 388
consensus_9560#1      TGTTGGCCCCAAGCTGACGTCAGCGTGGTAAGGTGCGGTAACCCCCTCCCCCTGAGAGAG 418
                      **************************************************** *******

consensus_9560#0      AAAGACTACAAGACGCATCTTTATCCCCCAAAACACTTCGGCCCTTCCGTGTGT--GTGT 446
consensus_9560#1      AAAGACTACAAGACGCATCTTTATCCCCCAAAACACTTCGGCCCTTCCGCGTGTCTGTGT 478
                      ************************************************* ****  ****

consensus_9560#0      GTTGTGTAAGTGTTGTCTCCAGCTGCAAGAAAGTGACCCCAAAATCCACAGTGACGGATA 506
consensus_9560#1      GTTGTGTAAGTGTTGTCTCCAACTGCAAGAAAGTGACCCCAAAATCCACAGTGACGGATA 538
                      ********************* **************************************

consensus_9560#0      AAAAAAAAACATTCCACAACCGGTTTTTGTTTTATGCTCCACCATCATCATCATCGCCAC 566
consensus_9560#1      AAAAAAAAACATTCCACAACCGGTTTTTGTTTTATGCTCCACCACCATCATCATCATCAT 598
                      ******************************************** **********  ** 

consensus_9560#0      CACCCCACTGGGGAATGTCGGAAAGTGAATAAACAGACACAGCGTGGAGAAATCAACATT 626
consensus_9560#1      CA---------------------------------------------------------- 600
                      **                                                          

consensus_9560#0      TGGCGCTCTTCGCAAACAGCGATAACGAAAAGAAATAGCGAAACGCACATTAACACCGAT 686
consensus_9560#1      ------------------------------------------------------------
                                                                                  

consensus_9560#0      TGTCGATCGGTGGACGTGGAAAAGTAACAAAATTCGTAGCTACTACTACCGTTTGGAGGT 746
consensus_9560#1      ------------------------------------------------------------
                                                                                  

consensus_9560#0      ACGGTTGTCATCATCATCACCATCGCAACCTCCTTCTCCGCCTATGAGCAGGCTACAGTG 806
consensus_9560#1      ------------------------------------------------------------
                                                                                  

consensus_9560#0      AGGGACAGAAAAACAAAGCAACAACACGAACTGCTGCCGAGTATTGTGTGCCGGCTTTTT 866
consensus_9560#1      ------------------------------------------------------------
                                                                                  

consensus_9560#0      TCGACACAGCCACAACAAATCACAACCGTCACAGGCCGCTAGTATGTCGCTGTTCAATTT 926
consensus_9560#1      ------------------------------------------------------------
                                                                                  

consensus_9560#0      GGCACGGTTTGGCGTTGGTGTGGCGCTGGAGGCGGCCATCACACGTACGGCCGCTCCGAT 986
consensus_9560#1      ------------------------------------------------------------
                                                                                  

consensus_9560#0      GACTGCCACCTCCGGGGTGCTGCAGGTGCGCCGCTCCATCTCCAAGAGCAGCGAGGTGAA 1046
consensus_9560#1      ------------------------------------------------------------
                                                                                  

consensus_9560#0      CAATTCCGACTTCATGACGATCCGGACGGAAAATCAGAACCATCCGCACCACCATCAGAA 1106
consensus_9560#1      ------------------------------------------------------------
                                                                                  

consensus_9560#0      GGGCAGCAGCCGCAACTGCGACAGCAAGCAACAGATAAGACTGAAGAAGGTGTCGAGGAC 1166
consensus_9560#1      ------------------------------------------------------------
                                                                                  

consensus_9560#0      ACTCTCGACGCTAAACTCCTCCGTACCGGAGGCGGCCACACAGACGGCCGTACCGAAGAG 1226
consensus_9560#1      ------------------------------------------------------------
                                                                                  

consensus_9560#0      CGAGAGTCGCGAGTTTATGGCCGTCTTTCCGGACGTGGTGCGCGATCTGACCGCTTACGC 1286
consensus_9560#1      ------------------------------------------------------------
                                                                                  

consensus_9560#0      CAGCAAGTACGACAAGAACGTGGCGACCAAATGGTTCGTGAAGGCACTGCAGTACAACGT 1346
consensus_9560#1      ------------------------------------------------------------
                                                                                  

consensus_9560#0      GCCCCAGGGCAAGAAGAACCGCGGGCTTGCCTGCGTGCTGGCGTACCGGATGTTGGCCCG 1406
consensus_9560#1      ------------------------------------------------------------
                                                                                  

consensus_9560#0      GTCGGAAGACTTGACGCCGGAGAACATCCGCCGGGCCCAGTATCTGGGCTGGGCAATTGA 1466
consensus_9560#1      ------------------------------------------------------------
                                                                                  

consensus_9560#0      GATGCTTCACTCGATGTTCCTGATCATGGACGACGTTATGGACGGAAGCGTGACACGCCG 1526
consensus_9560#1      ------------------------------------------------------------
                                                                                  

consensus_9560#0      TGGCCAACCGTGCTGGCACACGCTGGACGATGTGAAGCTGTCGGGCGTCAACGATGCCAT 1586
consensus_9560#1      ------------------------------------------------------------
                                                                                  

consensus_9560#0      CATGATCGAGGCAGCCATCGCGCACCTGGTCAAGATACAGTACGGCAACGAGCCGTACTA 1646
consensus_9560#1      ------------------------------------------------------------
                                                                                  

consensus_9560#0      TCCGCGGCTGCTGGAGCTGTTTAACGAGATGAAGTTCATCACGACCATCGGCCAATCGCT 1706
consensus_9560#1      ------------------------------------------------------------
                                                                                  

consensus_9560#0      GGATCTGCGCTCGGCCAAGCTCGATGTGACCGACTACTCGATGGATCTGTACAAATCGAT 1766
consensus_9560#1      ------------------------------------------------------------
                                                                                  

consensus_9560#0      CGTGTTCCACAAAACGGCCTACTACACGTTCTACCTCCCGGTTGCCATGGNCATGCACCT 1826
consensus_9560#1      ------------------------------------------------------------
                                                                                  

consensus_9560#0      TACTGGCTATACCGATCCGGAGATGTTCCGGCAGGCGAAAACGATTCTGCTCGAGATTGG 1886
consensus_9560#1      ------------------------------------------------------------