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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1011#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence
[CGCGAGTGAAAAATCACGACACGTTGAGAAACGGCTAAGAAAATTATAGTAAAGAGTATGAAAATATCATAAGAAAACAGGCGCAAGCAGCGAAGATGGAAGCTGAGAAGGAGGGGATCGTCGTGCCGGTAACGTTGGAAGATTATTGCATTAAAACTCATGCGAGGCCGGCCGAGCAACAGTTAGACATGACGGATTTCTATGATGACGAGTACGAACTGGATGACGACGATGATGACGAACAAATGAGCGCCAGCGATTACGAAGACGGTGACGATAGTGGCAACGGAGAGTCGTGATCCATTTTCTGAAACAATTAAATAAACTCGAAAACGCTATAATTATTATCAGTTCTGTATAGATTAATAAATTAACGGGCTTCTAAACCGGACGCTCTCTCTTTTCAGACGTGCCACCTAAATATTCAAATCACACGGTCAAAAAAGAAAAAAAAGGAAATTATTCGTCGTTTAGATGTTTAAGACAGAGTTTAAAGTAACGTTGATTATTGCATTTAATTCGTTGTCGCGATGTTTCAGGCAGAATCAAC]
[+] EMBL BI513656 [CGCGAGTGAAAAATCACGACACGTTGAGAAACGGCTAAGAAAATTATAGTAAAGAGTATGAAAATATCATAAGAAAACAGGCGCAAGCAGCGAAGATGGAAGCTGAGAAGGAGGGGATCGTCGTGCCGGTAACGTTGGAAGATTATTGCATTAAAACTCATGCGAGGCCGGCCGAGCAACAGTTAGACATGACGGATTTCTATGATGACGAGTACGAACTGGATGACGACGATGATGACGAACAAATGAGCGCCAGCGATTACGAAGACGGTGACGATAGTGGCAACGGAGAGTCGTGATCCATTTTCTGAAACAATTAAATAAACTCGAAAACGCTATAATTATTATCAGTTCTGTATAGATTAATAAATTAACGGGCTTCTAAACCGGACGCTCTCTCTTTTCAGACGTGCCACCTAAATATTCAAATCACACGGTCAAAAAAGAAAAAAAAGGAAATTATTCGTCGTTTAGATGTTTAAGACAGAGTTTAAAGTAACGTTGATTATTGCATTTAATTCGTTGTCGCGATGTTTCAGGCAGAATCAAC]
consensusID : consensus_1011#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence
[CGTCCTGCCGCGAGTGAAAAATCACGACACGTTGAGAAACGGCTAAGAAAATTATAGTAAAGACTGTAAATTGTCTGGAAAACCCGTTGGAAATTGATTCTCACGAGAAGGAGTAGTGTTCGCAAAGGCGTCCGTCCGACTGTAGTGTTCTGTGCTACCACTTCAGGAGGTTTGGGACGTTCCGCTTCCTGGAACAGACTGCAACTCTACTTCCAGAAAAAAAAATATGGCACAAACAACGAGTAGCGCTTTAAGGGCACTTGCCCTTGAATATAAAAGTCTTCAAGAGGAACCCGTCGAGGGATTCCGCGTGAAACTCGTTAACGAGGACAACATGTTTGAGTGGGAAGTGGCTATCTTCGGGCCCCCGGATACTCTTTACCAAGGAGGATACTTCAAGGCACACATGAAATTCCCTCCGGATTATCCGTACAGCCCGCCCAGCATTCGGTTTATGACGAAAGTTTGGCATCCGAACGTGTACGAGAATGGAGATCTATGTATATCGATTCTGCATCC]
[+] EMBL BI510602 [CGTCCTGCCGCGAGTGAAAAATCACGACACGTTGAGAAACGGCTAAGAAAATTATAGTAAAGACTGTAAATTGTCTGGAAAACCCGTTGGAAATTGATTCTCACGAGAAGGAGTAGTGTTCGCAAAGGCGTCCGTCCGACTGTAGTGTTCTGTGCTACCACTTCAGGAGGTTTGGGACGTTCCGCTTCCTGGAACAGACTGCAACTCTACTTCCAGAAAAAAAAATATGGCACAAACAACGAGTAGCGCTTTAAGGGCACTTGCCCTTGAATATAAAAGTCTTCAAGAGGAACCCGTCGAGGGATTCCGCGTGAAACTCGTTAACGAGGACAACATGTTTGAGTGGGAAGTGGCTATCTTCGGGCCCCCGGATACTCTTTACCAAGGAGGATACTTCAAGGCACACATGAAATTCCCTCCGGATTATCCGTACAGCCCGCCCAGCATTCGGTTTATGACGAAAGTTTGGCATCCGAACGTGTACGAGAATGGAGATCTATGTATATCGATTCTGCATCC]
consensusID : consensus_1011#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence
[TGTATATCGATTCTGCATCCACCAGTGGATGATCCACAAAGTGGTGAACTGCCATGCGAAAGGTGGAATCCGACACAAAATGTTAGGACGATCCTGTTGTCCGTGATATCGTTACTGAACGAACCGAATACGTACAGCCCTGCCAACGTGGATGCCTCTGTAATGTATAGGCGCTGGCGCGACTCCAAGGGTAAAGACAAAGAGTATGAAAATATCATAAGAAAACAGGCGCAAGCAGCGAAGATGGAAGCTGAGAAGGAGGGGATCGTCGTGCCGGTAACGTTGGAAGATTATTGCATTAAAACTCATGCGAGGCCGGCCGAGCAACAGTTAGACATGACGGATTTCTATGATGACGAGTACGA]
[+] EMBL BI515008 [TGTATATCGATTCTGCATCCACCAGTGGATGATCCACAAAGTGGTGAACTGCCATGCGAAAGGTGGAATCCGACACAAAATGTTAGGACGATCCTGTTGTCCGTGATATCGTTACTGAACGAACCGAATACGTACAGCCCTGCCAACGTGGATGCCTCTGTAATGTATAGGCGCTGGCGCGACTCCAAGGGTAAAGACAAAGAGTATGAAAATATCATAAGAAAACAGGCGCAAGCAGCGAAGATGGAAGCTGAGAAGGAGGGGATCGTCGTGCCGGTAACGTTGGAAGATTATTGCATTAAAACTCATGCGAGGCCGGCCGAGCAACAGTTAGACATGACGGATTTCTATGATGACGAGTACGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1011#0 ------------------------------------------------------------
consensus_1011#2 TGTATATCGATTCTGCATCCACCAGTGGATGATCCACAAAGTGGTGAACTGCCATGCGAA 60
consensus_1011#1 ------------------------------------------------------------
consensus_1011#0 ------------------------------------------------------------
consensus_1011#2 AGGTGGAATCCGACACAAAATGTTAGGACGATCCTGTTGTCCGTGATATCGTTACTGAAC 120
consensus_1011#1 ------------------------------------------------------------
consensus_1011#0 --------------------------CGCGAGTGAAAA-ATCACG-ACACGTTGAGAAAC 32
consensus_1011#2 GAACCGAATACGTACAGCCCTGCCAACGTGGATGCCTCTGTAATGTATAGGCGCTGGCGC 180
consensus_1011#1 ------------------CGTCCTGCCGCGAGTGAAAA-ATCACG-ACACGTTGAGAAAC 40
** * ** * * * * * * * *
consensus_1011#0 GGCTAAGAAAATTATAGTAAAGAGTATGAAAATATCATAAGAAAACAGGCGCAAGCAG-- 90
consensus_1011#2 GACTCCAAGGGTAAAGACAAAGAGTATGAAAATATCATAAGAAAACAGGCGCAAGCAG-- 238
consensus_1011#1 GGCTAAGAAAATTATAGTAAAGACTGT-AAATTGTC-TGGAAAACCCGTTGGAAATTGAT 98
* ** * * * ***** * * *** * ** * *** * * * ** *
consensus_1011#0 -----CGAAGATGGAAGCTGAGAAGGAGGGGATCGTCGTGCCGGTAACGTTGGAAGATTA 145
consensus_1011#2 -----CGAAGATGGAAGCTGAGAAGGAGGGGATCGTCGTGCCGGTAACGTTGGAAGATTA 293
consensus_1011#1 TCTCACGAGAAGGAGTAGTGTTCGCAAAGGCGTCCGTCCGACTGTAGTGTTCTGTG-CTA 157
*** * * ** * ** ** * * *** *** * **
consensus_1011#0 TTGCATTAAAACTCATGCGAGGCCGGCCGAGCAACAGTTAGACATGACGG-ATTTCTATG 204
consensus_1011#2 TTGCATTAAAACTCATGCGAGGCCGGCCGAGCAACAGTTAGACATGACGG-ATTTCTATG 352
consensus_1011#1 CCACTTCAGGAGGTTTGGGACGTTCCGCTTCCTGGAACAGACTGCAACTCTACTTCCAGA 217
* * * * ** ** * * * * ** * *** *
consensus_1011#0 ATGACGAGTACGAACTGGATGACGACGATGATGACGAACAAATGAGCGCCAGCGATTACG 264
consensus_1011#2 ATGACGAGTACGA----------------------------------------------- 365
consensus_1011#1 AAAAAAAATATGGCACAAACAACGA--GTAGCGCTTTAAGGGCACTTGCCCTTGAATATA 275
* * * ** *
consensus_1011#0 AAGACGGTGACGATAGTGGCAACGGAGAGTCGTGATCCATTTTCTGAAACAATTA-AATA 323
consensus_1011#2 ------------------------------------------------------------
consensus_1011#1 AAAGTCTTCAAGAGGAACCCGTCGAGGGATTCCGCGTGAAACTCGTTAACGAGGACAACA 335
consensus_1011#0 AACTCGAAAACGCTATAATTATTATCAGTTCTGTATAGATTAATAAATTAACGGGCTTCT 383
consensus_1011#2 ------------------------------------------------------------
consensus_1011#1 TGTTTGAGTGGGAAGTGGCTATCTTCGGGCCCCCGGATACTCTTTACCAAGGAGGATACT 395
consensus_1011#0 AAACCGGACGCTCTCTCTTTTCAGACGTGCCACCTAAATATTCAAATCACACGGTCAAAA 443
consensus_1011#2 ------------------------------------------------------------
consensus_1011#1 TCAAGGCACACA-TGAAATTCCCTCCGGATTATCCGTACAGCCCGCCCA-GCATTCGGTT 453
consensus_1011#0 AAGAAAAAAAAGGAAATTATTCGTCGTTTAGATGTTTAAGACAGAGTTTAAAGTAACGTT 503
consensus_1011#2 ------------------------------------------------------------
consensus_1011#1 TATGACGAAAGTTTGGCATCCGAACGTGTACGAGAATGGAGATCTATGTATATCGATTCT 513
consensus_1011#0 GATTATTGCATTTAATTCGTTGTCGCGATGTTTCAGGCAGAATCAAC 550
consensus_1011#2 -----------------------------------------------
consensus_1011#1 GCATCC----------------------------------------- 519
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |