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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1054#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 696 fasta sequence
[TGTTAAGTTCTGTTTTTAATCTAAATCTAATCCTTCATCATCATCACCTTTCTTATCAGGACTAGATGTTGGTGGAGCTTGTTTAGTATTTTTGTCCTCCTGTCCTTGCTGTGTTTGTTCTTGGCCACTTTTAGCTTCTGACTCGAGGGCAGTGACGAATTCTTCAATGTTTCCACTGGCTGCAGCATTGACAGCATCTGGGCCCAAGCCAAATTGACGGATGACAGGTCCCGCCTGGCCTGACTGCAAAGCAGACCAGAACATTGATAGCGCCTGGGAGAACTGGGGAGACACTAGCGTGGTACACAGGTGATCCCCTGGTGGTAAGTGCGGGCTCATTGCACGCTCCAAGTTTTCCGTTGCAGAAATCGCCGCAGGGATGGCATTGGTCAGCTCAGTTGCTACTCCCCTCTGCCGGACAATAAGCTGTGCTGTAGGTGGCCGAAAACAACAAATAATCCCAGAGAAACTTCCCCAACTGCTCAGTAGGGCGAGAGTCTCCGACAGCCAGGAAAAGTTCATGTGGAAAAAAATATTAAATAACGAAAGAACCATGCCTCTGTCTCTTGACTTTATACGAGTAGTATTAGTTTTGTCACTTTATATAGCGTTTCAGTTACTNNNGATACCATTTGATTCTATGAAATGATAAAAATTTATACGTTACACAGCTAAAATTTAAAATTTATAATACTT]
[+] EMBL BI505861 [TGTTAAGTTCTGTTTTTAATCTAAATCTAATCCTTCATCATCATCACCTTTCTTATCAGGACTAGATGTTGGTGGAGCTTGTTTAGTATTTTTGTCCTCCTGTCCTTGCTGTGTTTGTTCTTGGCCACTTTTAGCTTCTGACTCGAGGGCAGTGACGAATTCTTCAATGTTTCCACTGGCTGCAGCATTGACAGCATCTGGGCCCAAGCCAAATTGACGGATGACAGGTCCCGCCTGGCCTGACTGCAAAGCAGACCAGAACATTGATAGCGCCTGGGAGAACTGGGGAGACACTAGCGTGGTACACAGGTGATCCCCTGGTGGTAAGTGCGGGCTCATTGCACGCTCCAAGTTTTCCGTTGCAGAAATCGCCGCAGGGATGGCATTGGTCAGCTCAGTTGCTACTCCCCTCTGCCGGACAATAAGCTGTGCTGTAGGTGGCCGAAAACAACAAATAATCCCAGAGAAACTTCCCCAACTGCTC ]
[+] EMBL BI514633 [ CTGACTCGAGGGCAGTGACGAATTCTTCAATGTTTCCACTGGCTGCAGCATTGACAGCATCTGGGCCCAAGCCAAATTGACGGATGACAGGTCCCGCCTGGCCTGACTGCAAAGCAGACCAGAACATTGATAGCGCCTGGGAGAACTGGGGAGACACTAGCGTGGTACACAGGTGATCCCCTGGTGGTAAGTGCGGGCTCATTGCACGCTCCAAGTTTTCCGTTGCAGAAATCGCCGCAGGGATGGCATTGGTCAGCTCAGTTGCTACTCCCCTCTGCCGGACAATAAGCTGTGCTGTAGGTGGCCGAAAACAACAAATAATCCCAGAGAAACTTCCCCAACTGCTCAGTAGGGCGAGAGTCTCCGACAGCCAGGAAAAGTTCATGTGGAAAAAAATATTAAATAACGAAAGAACCATGCCTCTGTCTCTTGACTTTATACGAGTAGTATTAGTTTTGTCACTTTATATAGCGTTTCAGTTACTNNNGATACCATTTGATTCTATGAAATGATAAAAATTTATACGTTACACAGCTAAAATTTAAAATTTATAATACTT]
consensusID : consensus_1054#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence
[GAAGAGTGTATCTTTTACGATTCAAGTCATCCAACAAAAAATTTTTTGTTTGGCTCCAGGATCTTAAAACAGATAAAGATGAAGAATATTGTAGAAAAATTAATGAAGTTCTAAATAATCCACCAACTCCTGGATCTCAAAGAAGTGGCAGTACAAATCCAGAAGGGGATCTTCAAAATTTATTGAATAATATGTCACAACAACAATTAATGCAGTTATTTGGTGGTGTAGGTCAAATTGGTTTAGGTAGTTTATTGGGTACAATGAATAGACCTCAAGGTGTGCAAAGTACTAGAGCTTCTACAACAACAGCATCAACTCGAGTTACTACAAATACTTCAAGACCTACTACACAAATGGTATCTTCATCAGCATCTGCTAATGATTCTCCTAAAACTAATGGTGATAATAAATCATCATCACGAACATCAGATACATCAACATCTGGATCAACAACAAATACAAATAATAAAATTCAACTTAGTGATTTACAAAACTTTTTATCAGAAATTCCAACAACTACAGGAACAGAATCTGTTGTTCAGTCAGGCCAGGCGGGACCTGTCATCCGTCAATTTGGCTTGGGCCCA]
[+] EMBL BI509269 [GAAGAGTGTATCTTTTACGATTCAAGTCATCCAACAAAAAATTTTTTGTTTGGCTCCAGGATCTTAAAACAGATAAAGATGAAGAATATTGTAGAAAAATTAATGAAGTTCTAAATAATCCACCAACTCCTGGATCTCAAAGAAGTGGCAGTACAAATCCAGAAGGGGATCTTCAAAATTTATTGAATAATATGTCACAACAACAATTAATGCAGTTATTTGGTGGTGTAGGTCAAATTGGTTTAGGTAGTTTATTGGGTACAATGAATAGACCTCAAGGTGTGCAAAGTACTAGAGCTTCTACAACAACAGCATCAACTCGAGTTACTACAAATACTTCAAGACCTACTACACAAATGGTATCTTCATCAGCATCTGCTAATGATTCTCCTAAAACTAATGGTGATAATAAATCATCATCACGAACATCAGATACATCAACATCTGGATCAACAACAAATACAAATAATAAAATTCAACTTAGTGATTTACAAAACTTTTTATCAGAAATTCCAACAACTACAGGAACAGAATCTGTTGTTCAGTCAGGCCAGGCGGGACCTGTCATCCGTCAATTTGGCTTGGGCCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1054#0 TGTTAAGTTCTGTTTTTAATCTAAATCTAATCCTTCATCATCATCACCTTTCTTA----T 56
consensus_1054#1 ----GAAGAGTGTATCTTTTACGATTCAAGTCATCCAACAAAAAATTTTTTGTTTGGCTC 56
* *** * * * * ** * ** * ** ** * *** **
consensus_1054#0 CAGGACTAGATGTTGGTGGAGCTTGTTTAGTATTTTTGTCCTCCTGTCCTTGCTGTGTTT 116
consensus_1054#1 CAGGATCTTAAAACAGATAAAGATGAAGAATATTGTAGAAAAATTAATGAAGTTCTAAAT 116
***** * * * ** * **** * * * * * * *
consensus_1054#0 GTTCTTGGCCACTTTTAGCTTCTGACTCGAGGGCAGTGACGAATTCTTCAATGTTTCCAC 176
consensus_1054#1 AATCC-ACCAACTCCTGGATCTCAAAGAAGTGGCAGT-ACAAATCCAGAAGGGGATCTTC 174
** * *** * * * * ****** ** *** * * * ** *
consensus_1054#0 TGGCTGCAGCATTGACAGCATCTGGGCCCAAGCCAAATTGACGGATGACAGGTCCCGCCT 236
consensus_1054#1 AAAATTTA--TTGAATAATAT---GTCACAACAACAATTAATG-----CAGTTATTTGGT 224
* * * * * ** * * *** **** * * *** * *
consensus_1054#0 GGCCTGACTGCAAAGCAGACCAGAACATTGATAGCGCCTGGGAGAACTGGGGAGACACTA 296
consensus_1054#1 GGTGTAGGT-CAAATTGGTTTAGGTAGTTTAT------TGGGTACAATGAATAGACCTCA 277
** * * **** * ** ** ** **** * ** **** *
consensus_1054#0 GCGTGGTACACAGGTGATCCCCTGGTGGTAAGTGCGGGCTCATTGCACGCTCCAAGTTTT 356
consensus_1054#1 AGGTG-TGCA-AAGTACTAGAGCTTCTACAACAACAGCATCAACTCGAGTTACTACAAAT 335
*** * ** * ** * ** * * *** * * * * * *
consensus_1054#0 CCGTTGCAGAAATCGCCGCAGGGATGGCATTGGTCAGCTCAGTTGCTACTCCCCTCTGCC 416
consensus_1054#1 ACTT--CAAGACCTACTACACAAATGGTATCTTCATCAGCATCTGCTAATGATTCTCCTA 393
* * ** * * ** **** ** ** ***** *
consensus_1054#0 GGACAATAAGCTGTGCTGTAG-GTGGCCGAAAACAACAAATAATCCCAGAGAAACTTCCC 475
consensus_1054#1 AAACTAATGGTGATAATAAATCATCATCACGAACATCAGATACATCAACATCTGGATCAA 453
** * * * * * * * **** ** *** * * * **
consensus_1054#0 CAACTGCTCAGTAGGGCGAGAGTC--TCCGACAGCCAGGAAAAGTTCATGTGGAAAAAAA 533
consensus_1054#1 CAACAAATACAAATAATAAAATTCAACTTAGTGATTTACAAAACTTTTTATCAGAAATTC 513
**** * * * * ** **** ** * * ***
consensus_1054#0 TATTAAATAACGAAAGAACCATGCCTCTGTCTCTTGACTTTATACGAGTAGTATTAGTTT 593
consensus_1054#1 CAACAACTACAGGAACAG--AATCTGTTGTTCAGTCAGGCCAGGCGGGACCTGTCA--TC 569
* ** ** * ** * * * *** * * * ** * * * * *
consensus_1054#0 TGTCACTTTATATAGCGTTTCAGTTACTNNNGATACCATTTGATTCTATGAAATGATAAA 653
consensus_1054#1 CGTCAATTTGGCTTGGGCCCA--------------------------------------- 590
**** *** * * *
consensus_1054#0 AATTTATACGTTACACAGCTAAAATTTAAAATTTATAATACTT 696
consensus_1054#1 -------------------------------------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |