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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1075#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 816 fasta sequence
[CAAGGACGTCTTGGAACGATCCTGGGAAGTAGTCGACAATGTGAATGTCTCCCTGCGACTTTGGGACACATTTGGTGATCACGAAAAAGATCGACGTTTCGCGTACGGCAGATCAGACGTCGTGCTACTATGTTTCTCCATAACCAATCCCGTTTCGCTACGGAATTGCAAGGCGATGTGGTACCCAGAGATACGACGGTTCTGCCCTCAGACCCCCGTGCTGTTAGTGGGATGCAAGAACGATTTGCGTTACATGTATCGAGATGAAACTTATTTGAGCTATTTTCGTGATCGAAGTCCGTTCGTGAGAGCCACGAGAAAGAGCGATCTGGTGATGCCTGATCAAGCTCGAGCCGTTGCACGTGAACTTGGCGTTTGTTATTACGAGACCAGTGTCTTCACGTATTACGGTGTTAATGAAGTGTTCGAAAATTCGATACGTGCTGCCTTAATTGCGAGGCGTCAGCAACGATTTTGGATGACGAACTTGAAGAGGGTGCAGAGACCTCTGCTTCAGGCACCATTTTGTCCACCGAAACCTGTTCCACCGGAAGTGTGTCTAGCTGCAAGCACTTATGAAGAGAATATGAAGACACTATGGACAAAGCCTGTTCACACTGACGTGACTTAATAGCCGGAAACTGCACGTTTTCCGCTCATAGGTGTCTTTTAGCCGCTGCATCGCCTGCATTTCATCGACTTTTCTCTATGGAACTTGTTCAAGAGCAAACACCTCGAAGTTCCAGCGAATCTAGCATGGTGTTTCATATTTCTTATCATTTTTTTTACTATTTTTTGTCTTACTTATAAACGTTG]
[+] EMBL BI502835 [CAAGGACGTCTTGGAACGATCCTGGGAAGTAGTCGACAATGTGAATGTCTCCCTGCGACTTTGGGACACATTTGGTGATCACGAAAAAGATCGACGTTTCGCGTACGGCAGATCAGACGTCGTGCTACTATGTTTCTCCATAACCAATCCCGTTTCGCTACGGAATTGCAAGGCGATGTGGTACCCAGAGATACGACGGTTCTGCCCTCAGACCCCCGTGCTGTTAGTGGGATGCAAGAACGATTTGCGTTACATGTATCGAGATGAAACTTATTTGAGCTATTTTCGTGATCGAAGTCCGTTCGTGAGAGCCACGAGAAAGAGCGATCTGGTGATGCCTGATCAAGCTCGAGCCGTTGCACGTGAACTTGGCGTTTGTTATTACGAGACCAGTGTCTTCACGTATTACGGTGTTAATGAAGTGTTCGAAAATTCGATACGTGCTGCCTTAATTGCGAGGCGTCAGCAACGATTTTGGATGACGAACTTGAAGAGGGTGCAGAGACCTCTGCTTCAGGCACCATTTT ]
[+] EMBL BI507123 [ ATCGAGATGAAACTTATTTGAGCTATTTTCGTGATCGAAGTCCGTTCGTGAGAGCCACGAGAAAGAGCGATCTGGTGATGCCTGATCAAGCTCGAGCCGTTGCACGTGAACTTGGCGTTTGTTATTACGAGACCAGTGTCTTCACGTATTACGGTGTTAATGAAGTGTTCGAAAATTCGATACGTGCTGCCTTAATTGCGAGGCGTCAGCAACGATTTTGGATGACGAACTTGAAGAGGGTGCAGAGACCTCTGCTTCAGGCACCATTTTGTCCACCGAAACCTGTTCCACCGGAAGTGTGTCTAGCTGCAAGCACTTATGAAGAGAATATGAAGACACTATGGACAAAGCCTGTTCACACTGACGTGACTTAATAGCCGGAAACTGCACGTTTTCCGCTCATAGGTGTCTTTTAGCCGCTGCATCGCCTGCATTTCATCGACTTTTCTCTATGGAACTTGTTCAAGAGCAAACACCTCGAAGTTCCAGCGAATCTAGCATGGTGTTTCATATTTCTTATCATTTTTTTTACTATTTTTTGTCTTACTTATAAACGTTG]
consensusID : consensus_1075#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence
[TTTGGTGATCACGAAAAAGATCGACGTTTCGCGTACGGCAGATCAGACGTCGTGCTACTATGTTTCTCCATAACCAATCCCGTTTCGCTACGGAATTGCAAGGCGATGTGGTACCCAGAGATACGACGGTTCTGCCCTCAGACCCCCATTTTCCGTCAATGAGCACGGCACGTTTTTCGAATGTGAAGAACGTGAATGCTTTAAATTGCTCATCCATTCTGATCACATAATAAGTGATTTTTATACAAGAGATATTTCAGTGGCTGTTGAAATCTTTGAGATTTTTCAAATTTTTTCTGTTAATATTGTTCAAGATTTCTGTATATTCTGTATACAAGAAAATTTCTAAATCGATTTCAAAAAGAATTTTAGAAATGCATCAAATCCGAATTGCATTTTATACCGAATTGCTCTGCATCTAAATGATAAGAAATCTTGGACAGTATTTACTCGAATGATTATTATAATTTCCACTTCCCTCTCCCTACAAAAATTACAAT]
[+] EMBL BI511659 [TTTGGTGATCACGAAAAAGATCGACGTTTCGCGTACGGCAGATCAGACGTCGTGCTACTATGTTTCTCCATAACCAATCCCGTTTCGCTACGGAATTGCAAGGCGATGTGGTACCCAGAGATACGACGGTTCTGCCCTCAGACCCCCATTTTCCGTCAATGAGCACGGCACGTTTTTCGAATGTGAAGAACGTGAATGCTTTAAATTGCTCATCCATTCTGATCACATAATAAGTGATTTTTATACAAGAGATATTTCAGTGGCTGTTGAAATCTTTGAGATTTTTCAAATTTTTTCTGTTAATATTGTTCAAGATTTCTGTATATTCTGTATACAAGAAAATTTCTAAATCGATTTCAAAAAGAATTTTAGAAATGCATCAAATCCGAATTGCATTTTATACCGAATTGCTCTGCATCTAAATGATAAGAAATCTTGGACAGTATTTACTCGAATGATTATTATAATTTCCACTTCCCTCTCCCTACAAAAATTACAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1075#0 CAAGGACGTCTTGGAACGATCCTGGGAAGTAGTCGACAATGTGAATGTCTCCCTGCGACT 60
consensus_1075#1 ------------------------------------------------------------
consensus_1075#0 TTGGGACACATTTGGTGATCACGAAAAAGATCGACGTTTCGCGTACGGCAGATCAGACGT 120
consensus_1075#1 ----------TTTGGTGATCACGAAAAAGATCGACGTTTCGCGTACGGCAGATCAGACGT 50
**************************************************
consensus_1075#0 CGTGCTACTATGTTTCTCCATAACCAATCCCGTTTCGCTACGGAATTGCAAGGCGATGTG 180
consensus_1075#1 CGTGCTACTATGTTTCTCCATAACCAATCCCGTTTCGCTACGGAATTGCAAGGCGATGTG 110
************************************************************
consensus_1075#0 GTACCCAGAGATACGACGGTTCTGCCCTCAGACCCCCGTGCTGTTAGTGGGATGCAAGAA 240
consensus_1075#1 GTACCCAGAGATACGACGGTTCTGCCCTCAGACCCCCAT--TTTCCGTCAA---TGAGCA 165
************************************* * * * ** ** *
consensus_1075#0 CGATTTGCGTTACATGTATCGAGA-TGAAACTTATTTGAGCTATTTTCGTGATCGAAGTC 299
consensus_1075#1 CGGCACGTTTTTCGAATGTGAAGAACGTGAATGCTTTAAATTGCTC-----------ATC 214
** * ** * * * *** * * * *** * * * **
consensus_1075#0 CGTTCGTGAGAGCCACGAGAAAGAGCGATCTGGTGATGCCTGATCAAGCTCGAGCCGTTG 359
consensus_1075#1 CATTC-TGA---TCAC-ATAATAAGTGATTT--TTATACAAGAG-ATATTTCAGTGGCTG 266
* *** *** *** * ** ** *** * * ** * ** * * ** * **
consensus_1075#0 CACGTGAACTTGGCGTTTGTTATTACGAGACCAGTGTCTTCACGTATTACGGTGTTAATG 419
consensus_1075#1 T-TGAAATCTTTGAGATTTTT---------CAAATTTTTTC-----------TGTTAAT- 304
* * *** * * ** ** * * * * *** *******
consensus_1075#0 AAGTGTTCGAAAATTCGATACGTGCTGCCTTAATTGCGAGGCGTCAGCAACGATTTTGGA 479
consensus_1075#1 -ATTGTTCAAGATTTCTGTATATTCTGTAT--ACAAGAAAATTTCTAAATCGATTTCAAA 361
* ***** * * *** ** * *** * * * ** * ****** *
consensus_1075#0 TGACGAACTTGAAGAGGGTGCAGAGACCTCTGCTTCAGGCACCATTTTGTCCACCGAAAC 539
consensus_1075#1 --AAGAATTTTAGAAA--TGCA------TCAAATCCGAATTGCATTTTAT--ACCGAATT 409
* *** ** * * **** ** * * ****** * ******
consensus_1075#0 CTGTTCCACCGGAAGTGTGTCTAGCTGCAAGCACTTATGAAGAGAAT-ATGAAGACACTA 598
consensus_1075#1 GCTCTGCATCTAAATGATAAGAAATCTTGGACAGTATTTACTCGAATGATTATTATAATT 469
* ** * ** * * ** * * * **** ** * * * *
consensus_1075#0 TGGACAAAGCCTGTTCACACTGACGTGACTTAATAGCCGGAAACTGCACGTTTTCCGCTC 658
consensus_1075#1 TCCACTTC-CCTCTCCCTACAAAAATTAC--AAT-------------------------- 500
* ** *** * * ** * * ** ***
consensus_1075#0 ATAGGTGTCTTTTAGCCGCTGCATCGCCTGCATTTCATCGACTTTTCTCTATGGAACTTG 718
consensus_1075#1 ------------------------------------------------------------
consensus_1075#0 TTCAAGAGCAAACACCTCGAAGTTCCAGCGAATCTAGCATGGTGTTTCATATTTCTTATC 778
consensus_1075#1 ------------------------------------------------------------
consensus_1075#0 ATTTTTTTTACTATTTTTTGTCTTACTTATAAACGTTG 816
consensus_1075#1 --------------------------------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |