Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 1094 cluster # 1094       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1094#0 length = 507 sequences # 2  
 consensus_1094#1 length = 258 sequences # 1  
consensusID : consensus_1094#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 507
fasta sequence 
                              [TTTTTTTTTTTCATCGTTTTATCTGTCGACTCACCGTAGATCGATTCCGTTTCTTGCGGCCCCGCGCACGCTTAACGCGCCGGGGTTGTCACTGTAAGGTTAAACTCCAAACGAAACAAGTCACGGACGCGGTATGGGAGAGCAAGAGGAATAATCGACAAAGAATAATCGAAGATTGTACATTATTGTATTTACACGAAGCGAAGTACCTCTACTTTGTATTGTACGAGCGAAAGAACGAACGAACGAACGAACGAACGAACGAATAAATAATAATCCATTGCACGCTGTGTCGACACGGCGTCCAGGGATTCCCCAGTTATTTTCTATCGCGATCTGCGCGTATCCACGTTATAACCACGTTTATCTCTTATCTTCCATCCCGATCTTTTTAATTTACACGCGAATTTCTCATTCTAGATTTCCATTTTTTTTTTTCTTCGACTCCGTGTCGTACAAAATTCCGTTAAAAAGGTTAAGGATAATTTATAATCGAGTGAAAAAAAA]

[-] EMBL BI502775             [TTTTTTTTTTTCATCGTTTTATCTGTCGACTCACCGTAGATCGATTCCGTTTCTTGCGGCCCCGCGCACGCTTAACGCGCCGGGGTTGTCACTGTAAGGTTAAACTCCAAACGAAACAAGTCACGGACGCGGTATGGGAGAGCAAGAGGAATAATCGACAAAGAATAATCGAAGATTGTACATTATTGTATTTACACGAAGCGAAGTACCTCTACTTTGTATTGTACGAGCGAAAGAACGAACGAACGAACGAACGAACGAACGAATAAATAATAATCCATTGCACGCTGTGTCGACACGGCGTCCAGGGATTCCCCAGTTATTTTCTATCGCGATCTGCGCGTATCCACGTTATAACCACGTTTATCTCTTATCTTCCATCCCGATCTTTTTAATTTACACGCGAATTTCTCATTCTAGATTTCCA                                                                                ]
[+] EMBL BI504708             [                                                                               CCGGGGTTGTCACTGTAAGGTTAAACTCCAAACGAAACAAGTCACGGACGCGGTATGGGAGAGCAAGAGGAATAATCGACAAAGAATAATCGAAGATTGTACATTATTGTATTTACACGAAGCGAAGTACCTCTACTTTGTATTGTACGAGCGAAAGAACGAACGAACGAACGAACGAACGAACGAATAAATAATAATCCATTGCACGCTGTGTCGACACGGCGTCCAGGGATTCCCCAGTTATTTTCTATCGCGATCTGCGCGTATCCACGTTATAACCACGTTTATCTCTTATCTTCCATCCCGATCTTTTTAATTTACACGCGAATTTCTCATTCTAGATTTCCATTTTTTTTTTTCTTCGACTCCGTGTCGTACAAAATTCCGTTAAAAAGGTTAAGGATAATTTATAATCGAGTGAAAAAAAA]




>consensus_1094#0
TTTTTTTTTTTCATCGTTTTATCTGTCGACTCACCGTAGATCGATTCCGTTTCTTGCGGC
CCCGCGCACGCTTAACGCGCCGGGGTTGTCACTGTAAGGTTAAACTCCAAACGAAACAAG
TCACGGACGCGGTATGGGAGAGCAAGAGGAATAATCGACAAAGAATAATCGAAGATTGTA
CATTATTGTATTTACACGAAGCGAAGTACCTCTACTTTGTATTGTACGAGCGAAAGAACG
AACGAACGAACGAACGAACGAACGAATAAATAATAATCCATTGCACGCTGTGTCGACACG
GCGTCCAGGGATTCCCCAGTTATTTTCTATCGCGATCTGCGCGTATCCACGTTATAACCA
CGTTTATCTCTTATCTTCCATCCCGATCTTTTTAATTTACACGCGAATTTCTCATTCTAG
ATTTCCATTTTTTTTTTTCTTCGACTCCGTGTCGTACAAAATTCCGTTAAAAAGGTTAAG
GATAATTTATAATCGAGTGAAAAAAAA

consensusID : consensus_1094#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 258
fasta sequence 
                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTACTGCGATGCAAAGTCACGAACGAACGAGGACCGAACGAACGAATAAATAATAATCCATTGCACGCTGTGTCGACACGGCGTCCAAGGATTCCCCAGTTGTTTTCTATCGCGATCTGCGCGTATCCACGTTATAACCACGTTTATCTCTTATCTTCCATCCCGATCTTTTTAATTTACACGCGAATTTCTCATTCTAGATTTCCATTTTTTTCTTTCTTCGA]

[-] EMBL BI505628             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTACTGCGATGCAAAGTCACGAACGAACGAGGACCGAACGAACGAATAAATAATAATCCATTGCACGCTGTGTCGACACGGCGTCCAAGGATTCCCCAGTTGTTTTCTATCGCGATCTGCGCGTATCCACGTTATAACCACGTTTATCTCTTATCTTCCATCCCGATCTTTTTAATTTACACGCGAATTTCTCATTCTAGATTTCCATTTTTTTCTTTCTTCGA]




>consensus_1094#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTACTGCGATGCAAAGTCACGAACGA
ACGAGGACCGAACGAACGAATAAATAATAATCCATTGCACGCTGTGTCGACACGGCGTCC
AAGGATTCCCCAGTTGTTTTCTATCGCGATCTGCGCGTATCCACGTTATAACCACGTTTA
TCTCTTATCTTCCATCCCGATCTTTTTAATTTACACGCGAATTTCTCATTCTAGATTTCC
ATTTTTTTCTTTCTTCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1094#0      TTTTTTTTTTTCATCGTTTTATCTGTCGACTCACCGTAGATCGATTCCGTTTCTTGCGGC 60
consensus_1094#1      ------------------------------------------------------------
                                                                                  

consensus_1094#0      CCCGCGCACGCTTAACGCGCCGGGGTTGTCACTGTAAGGTTAAACTCCAAACGAAACAAG 120
consensus_1094#1      ------------------------------------------------------------
                                                                                  

consensus_1094#0      TCACGGACGCGGTATGGGAGAGCAAGAGGAATAATCGACAAAGAATAATCGAAGATTGTA 180
consensus_1094#1      -------------------------------------------------------TTTTT 5
                                                                             ** * 

consensus_1094#0      CATTATTGTATTTACACGAAGCGAAGTACCTCTACTTTGTATTGTACGA-GCGAAAGAAC 239
consensus_1094#1      TTTTTTTTTTTTTTT-----------TTTTTTTTTTTTGGTTACTGCGATGCAAAGTCAC 54
                        ** ** * ***             *   * *  ****  *  * *** ** **   **

consensus_1094#0      GAACGAACGAACGAACGAACGAACGAATAAATAATAATCCATTGCACGCTGTGTCGACAC 299
consensus_1094#1      GAACGAACGAG-GACCGAACGAACGAATAAATAATAATCCATTGCACGCTGTGTCGACAC 113
                      **********  ** *********************************************

consensus_1094#0      GGCGTCCAGGGATTCCCCAGTTATTTTCTATCGCGATCTGCGCGTATCCACGTTATAACC 359
consensus_1094#1      GGCGTCCAAGGATTCCCCAGTTGTTTTCTATCGCGATCTGCGCGTATCCACGTTATAACC 173
                      ******** ************* *************************************

consensus_1094#0      ACGTTTATCTCTTATCTTCCATCCCGATCTTTTTAATTTACACGCGAATTTCTCATTCTA 419
consensus_1094#1      ACGTTTATCTCTTATCTTCCATCCCGATCTTTTTAATTTACACGCGAATTTCTCATTCTA 233
                      ************************************************************

consensus_1094#0      GATTTCCATTTTTTTTTTTCTTCGACTCCGTGTCGTACAAAATTCCGTTAAAAAGGTTAA 479
consensus_1094#1      GATTTCCATTTTTTTCTTTCTTCGA----------------------------------- 258
                      *************** *********                                   

consensus_1094#0      GGATAATTTATAATCGAGTGAAAAAAAA 507
consensus_1094#1      ----------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)