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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1130#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 653 fasta sequence
[GTGAGAAAACGCGAAGAAAAAAGAAAAAAAGAAAAAAAAACTTTTGCACCCACCTAATATACCGATAGAGCTAGCCGCGGCGAAGAAGAAAATTTTCTAATGCACCGAGCGTCGCCACAGTCGCCGTAATTAAGGCACGTAGCCGTTTAGCTAGCAGCTAATGATCGACGGCCGAAAATAGAAGCACGGTACAGACTCGTATGTATGTATGTATGTATGTCGATGTGACCTTTCGATATTAGTCGAGTAAGGCTTCGAGGTAAAGGCCTTAAAAAAAAACTATCCTGCCCCCTCGAATTTATTTTCATCCCCCCCCTCCCTCGGAGAGACGCCATTGGATCAGGAAAATTTCGGATCGAAACTCGAAATATTTCTCGAATTCGTAGAGACGTATATACATATATATATATATATGTGTGTGTATACAATTTGGAAGAAAGCGAGGAAAAGGTAATAAAAATTTATCGTATATAGGATGATATCGATGGCGACGACNNNNAACGGAAAATATGGCCGATGTACCGTTGTCGAGAATGTAAACTCGAGTCCAAGTACGCGCGCGCTGTCGATCAATTTTGNNGGAACAATGTGCAATGTTGCAAGCGATCGAAAAATATATATGTATATATATATATATTTTATAAAACGATCGA]
[+] EMBL BI511662 [GTGAGAAAACGCGAAGAAAAAAGAAAAAAAGAAAAAAAAACTTTTGCACCCACCTAATATACCGATAGAGCTAGCCGCGGCGAAGAAGAAAATTTTCTAATGCACCGAGCGTCGCCACAGTCGCCGTAATTAAGGCACGTAGCCGTTTAGCTAGCAGCTAATGATCGACGGCCGAAAATAGAAGCACGGTACAGACTCGTATGTATGTATGTATGTATGTCGATGTGACCTTTCGATATTAGTCGAGTAAGGCTTCGAGGTAAAGGCCTTAAAAAAAAACTATCCTGCCCCCTCGAATTTATTTTCATCCCCCCCCTCCCTCGGAGAGACGCCATTGGATCAGGAAAATTTCGGATCGAAACTCGAAATATTTCTCGAATTCGTAGAGACGTATATACATATATATATATATATGTGTGTGTATACAATTTGGAAGAAAGCGAGGAAAAGGTAATAAAAATTTATCGTATATAGGATGATATCGATGGCGACGAC ]
[+] EMBL BI516058 [ TCTAATGCACCGAGCGTCGCCACAGTCGCCGTAATTAAGGCACGTAGCCGTTTAGCTAGCAGCTAATGATCGACGGCCGAAAATAGAAGCACGGTACAGACTCGTATGTATGTATGTATGTATGTCGATGTGACCTTTCGATATTAGTCGAGTAAGGCTTCGAGGTAAAGGCCTTAAAAAAAAACTATCCTGCCCCCTCGAATTTATTTTCATCCCCCCCCTCCCTCGGAGAGACGCCATTGGATCAGGAAAATTTCGGATCGAAACTCGAAATATTTCTCGAATTCGTAGAGACGTATATACATATATATATATATATGTGTGTGTATACAATTTGGAAGAAAGCGAGGAAAAGGTAATAAAAATTTATCGTATATAGGATGATATCGATGGCGACGACNNNNAACGGAAAATATGGCCGATGTACCGTTGTCGAGAATGTAAACTCGAGTCCAAGTACGCGCGCGCTGTCGATCAATTTTGNNGGAACAATGTGCAATGTTGCAAGCGATCGAAAAATATATATGTATATATATATATATTTTATAAAACGATCGA]
consensusID : consensus_1130#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 285 fasta sequence
[GCTAAACGGCTACGTGCCTTAATTACGGCGACGACGAAGAACGGAAAATATGGCCGATGTACCGTTGTCGAGAATGTAAACTCGAGTCCAAGTACGCGCGCGCTGTCGATCAATTTTGAAGGAACAATGTGCAATGNNNCAAGCGATCGAAAAATATATATGTATATATATATATTTTATAAAACGATCGATCTATTTTATAAAACAAGAATCGATAGTACGCGTTGAAATTCTTAAAGGATCAAGAAATCGTGTTTCGTTCTCGAGTTTCTTACGTAAAAAAAA]
[+] EMBL BI507281 [GCTAAACGGCTACGTGCCTTAATTACGGCGACGACGAAGAACGGAAAATATGGCCGATGTACCGTTGTCGAGAATGTAAACTCGAGTCCAAGTACGCGCGCGCTGTCGATCAATTTTGAAGGAACAATGTGCAATGNNNCAAGCGATCGAAAAATATATATGTATATATATATATTTTATAAAACGATCGATCTATTTTATAAAACAAGAATCGATAGTACGCGTTGAAATTCTTAAAGGATCAAGAAATCGTGTTTCGTTCTCGAGTTTCTTACGTAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1130#0 GTGAGAAAACGCGAAGAAAAAAGAAAAAAAGAAAAAAAAACTTTTGCACCCACCTAATAT 60
consensus_1130#1 ------------------------------------------------------------
consensus_1130#0 ACCGATAGAGCTAGCCGCGGCGAAGAAGAAAATTTTCTAATGCACCGAGCGTCGCCACAG 120
consensus_1130#1 ------------------------------------------------------------
consensus_1130#0 TCGCCGTAATTAAGGCACGTAGCCGTTTAGCTAGCAGCTAATGATCGACGGCCGAAAATA 180
consensus_1130#1 ------------------------------------------------------------
consensus_1130#0 GAAGCACGGTACAGACTCGTATGTATGTATGTATGTATGTCGATGTGACCTTTCGATATT 240
consensus_1130#1 ------------------------------------------------------------
consensus_1130#0 AGTCGAGTAAGGCTTCGAGGTAAAGGCCTTAAAAAAAAACTATCCTGCCCCCTCGAATTT 300
consensus_1130#1 ------------------------------------------------------------
consensus_1130#0 ATTTTCATCCCCCCCCTCCCTCGGAGAGACGCCATTGGATCAGGAAAATTTCGGATCGAA 360
consensus_1130#1 ------------------------------------------------------------
consensus_1130#0 ACTCGAAATATTTCTCGAATTCGTAGAGACGTATATACATATATATATATATATGTGTGT 420
consensus_1130#1 ------------------------------------------------------------
consensus_1130#0 GTATACAATTTGGAAGAAAGCGAGGAAAAGGTAATAAAAATTTATCGTATATAGGATGAT 480
consensus_1130#1 ---------------------------------------GCTAAACGGCTACGTGCCTTA 21
* * ** ** *
consensus_1130#0 ATCGATGGCGACGACNNNNAACGGAAAATATGGCCGATGTACCGTTGTCGAGAATGTAAA 540
consensus_1130#1 ATT-ACGGCGACGACGAAGAACGGAAAATATGGCCGATGTACCGTTGTCGAGAATGTAAA 80
** * ********* *****************************************
consensus_1130#0 CTCGAGTCCAAGTACGCGCGCGCTGTCGATCAATTTTGNNGGAACAATGTGCAATGTTGC 600
consensus_1130#1 CTCGAGTCCAAGTACGCGCGCGCTGTCGATCAATTTTGAAGGAACAATGTGCAATGNNNC 140
************************************** **************** *
consensus_1130#0 AAGCGATCGAAAAATATATATGTATATATATATATATTTTATAAAACGATCGA------- 653
consensus_1130#1 AAGCGATCGAAAAATATATATGTATATATATATAT--TTTATAAAACGATCGATCTATTT 198
*********************************** ****************
consensus_1130#0 ------------------------------------------------------------
consensus_1130#1 TATAAAACAAGAATCGATAGTACGCGTTGAAATTCTTAAAGGATCAAGAAATCGTGTTTC 258
consensus_1130#0 ---------------------------
consensus_1130#1 GTTCTCGAGTTTCTTACGTAAAAAAAA 285
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |