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Apis mellifera
cluster # 1137 cluster # 1137       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1137#0 length = 616 sequences # 1  
 consensus_1137#1 length = 325 sequences # 2  
consensusID : consensus_1137#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 616
fasta sequence 
                              [ATTATTATCGAATTTTTATCGTTTATTTTTTCATTAGATAAGTTTGAAAAACAAATTACGGTTTAATCCTTTGCCTGATCACAATAACAACAATTTTCTATTTATTTGTGAACTTATAAGTTATTCTAATGATTTATCACTGAATTGAATTGTTTTTATTTTGATCACTTCACAAATTTGGAAGAAGAAATAAAATGTGACGAATAAAATGTTTTGCAGGTAAAATAGGATTGTTCTATTTGATATTTTACGGGGTGCTAGCCGCACTGGTTGCAATTTGTTTTTGGGGTTTTTTTCAAACGTTAGATCCAAGGATACCAAGATGGCAACTAGAACGTTCGATAATTGGGACAAATCCTGGATTAGGATTTAGACCACAACCGCCATTAGAAAATGTGGAGAGTACGTTAATTTGGTACAGAGGAACCGATAGCGAGAATTTTAAATATTGGATCGATTCTCTGGAATCGTTCTTAAAAGATTATATAACGCCAGGTTCGATTCCTGGTCTCGGTGCAAATATTAATAAATGTGATTACAATCAACCACCACCTCCAGGTAAAGTGTGCGACGTTGATGTTAAAAATTGGTATCCTTGTACTAAAGAGAATAAATA]

[+] EMBL BI509966             [ATTATTATCGAATTTTTATCGTTTATTTTTTCATTAGATAAGTTTGAAAAACAAATTACGGTTTAATCCTTTGCCTGATCACAATAACAACAATTTTCTATTTATTTGTGAACTTATAAGTTATTCTAATGATTTATCACTGAATTGAATTGTTTTTATTTTGATCACTTCACAAATTTGGAAGAAGAAATAAAATGTGACGAATAAAATGTTTTGCAGGTAAAATAGGATTGTTCTATTTGATATTTTACGGGGTGCTAGCCGCACTGGTTGCAATTTGTTTTTGGGGTTTTTTTCAAACGTTAGATCCAAGGATACCAAGATGGCAACTAGAACGTTCGATAATTGGGACAAATCCTGGATTAGGATTTAGACCACAACCGCCATTAGAAAATGTGGAGAGTACGTTAATTTGGTACAGAGGAACCGATAGCGAGAATTTTAAATATTGGATCGATTCTCTGGAATCGTTCTTAAAAGATTATATAACGCCAGGTTCGATTCCTGGTCTCGGTGCAAATATTAATAAATGTGATTACAATCAACCACCACCTCCAGGTAAAGTGTGCGACGTTGATGTTAAAAATTGGTATCCTTGTACTAAAGAGAATAAATA]




>consensus_1137#0
ATTATTATCGAATTTTTATCGTTTATTTTTTCATTAGATAAGTTTGAAAAACAAATTACG
GTTTAATCCTTTGCCTGATCACAATAACAACAATTTTCTATTTATTTGTGAACTTATAAG
TTATTCTAATGATTTATCACTGAATTGAATTGTTTTTATTTTGATCACTTCACAAATTTG
GAAGAAGAAATAAAATGTGACGAATAAAATGTTTTGCAGGTAAAATAGGATTGTTCTATT
TGATATTTTACGGGGTGCTAGCCGCACTGGTTGCAATTTGTTTTTGGGGTTTTTTTCAAA
CGTTAGATCCAAGGATACCAAGATGGCAACTAGAACGTTCGATAATTGGGACAAATCCTG
GATTAGGATTTAGACCACAACCGCCATTAGAAAATGTGGAGAGTACGTTAATTTGGTACA
GAGGAACCGATAGCGAGAATTTTAAATATTGGATCGATTCTCTGGAATCGTTCTTAAAAG
ATTATATAACGCCAGGTTCGATTCCTGGTCTCGGTGCAAATATTAATAAATGTGATTACA
ATCAACCACCACCTCCAGGTAAAGTGTGCGACGTTGATGTTAAAAATTGGTATCCTTGTA
CTAAAGAGAATAAATA

consensusID : consensus_1137#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 325
fasta sequence 
                              [GTGACTAGTGCGTAAATCTTATATAAAGTCTTTCACTTGGGAACACAATGGTCAGCAAGGATTCGAAAATGGTCACTCCGGAGATGGCAAATCCTTATCTTAAACCGCCGAGTATGTCAACCAGCCAGTCTTTAAAGACTTTTATTTACAATCGTGAAACTGGTGCCTTTTTAGGCAGAACAGCTAGTAGTTGGGGTAAAATAGGATTGTTCTATTTGATATTTTACGGGGTGCTAGCCGCACTGGTTGCAATTTGTTTTTGGGGTTTTTTTCAAACGTTAGATCCAAGGATACCAAGATGGCAACTAGAACGTTCGAAAAAAAA]

[+] EMBL BI506065             [GTGACTAGTGCGTAAATCTTATATAAAGTCTTTCACTTGGGAACACAATGGTCAGCAAGGATTCGAAAATGGTCACTCCGGAGATGGCAAATCCTTATCTTAAACCGCCGAGTATGTCAACCAGCCAGTCTTTAAAGACTTTTATTTACAATCGTGAAACTGGTGCCTTTTTAGGCAGAACAGCTAGTAGTTGGGGTAAAATAGGATTGTTCTATTTGATATTTTACGGGGTGCTAGCCGCACTGGTTGCAATTTGTTTTTGGGGTTTTTTTCAAACGTTAGATCCAAGGATACCAAGATGGCAACTAGAACGTTCGAAAAAAAA]
[+] EMBL BI517067             [GTGACTAGTGCGTAAATCTTATATAAAGTCTTTCACTTGGGAACACAATGGTCAGCAAGGATTCGAAAATGGTCACTCCGGAGATGGCAAATCCTTATCTTAAACCGCCGAGTATGTCAACCAGCCAGTCTTTAAAGACTTTTATTTACAATCGTGAAACTGGTGCCTTTTTAGGCAGAACAGCTAGTAGTTGGGGTAAAATAGGATTGTTCTATTTGATATTTTACGGGGTGCTAGCCGCACTGGTTGCAATTTGTTTTTGGGGTTTTTTTCAAACGTTAGATCCAAGGATACCAAGATGGCAACTAGAACGTTTAA       ]




>consensus_1137#1
GTGACTAGTGCGTAAATCTTATATAAAGTCTTTCACTTGGGAACACAATGGTCAGCAAGG
ATTCGAAAATGGTCACTCCGGAGATGGCAAATCCTTATCTTAAACCGCCGAGTATGTCAA
CCAGCCAGTCTTTAAAGACTTTTATTTACAATCGTGAAACTGGTGCCTTTTTAGGCAGAA
CAGCTAGTAGTTGGGGTAAAATAGGATTGTTCTATTTGATATTTTACGGGGTGCTAGCCG
CACTGGTTGCAATTTGTTTTTGGGGTTTTTTTCAAACGTTAGATCCAAGGATACCAAGAT
GGCAACTAGAACGTTCGAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1137#0      ---ATTATTATCGAATTTTTATCGTTTATTTTTTCATTAGATAAGTTTGAAAAACAAATT 57
consensus_1137#1      GTGACTAGTGCGTAAATCTTAT-ATAAAGTCTTTCACTTGGGAACAC--AATGGTCAGCA 57
                         * ** *    ** * ****  *  * * ***** * *  **     **     *   

consensus_1137#0      ACGGTTTAATCCTTTGCCTGATCACAATAACAACAATTTTCTATTTATTTGTGAACTTAT 117
consensus_1137#1      AGGATTCGAAAATGGTC---ACTCCGGAGATGGCAAATCCTTATCT-----TAAACCGCC 109
                      * * **  *   *   *   *   *    *   *** *   *** *     * ***    

consensus_1137#0      AAGTTATTCTAATGATTTATCACTGAATTGAATTGTTTTTATTTTGATCACTTCACAAAT 177
consensus_1137#1      GAGTATGTCAACCAGCCAGTCTTTAAAG------ACTTTTATTT----------ACAATC 153
                       ***   ** *        **  * **         ********          ****  

consensus_1137#0      TTGGAAGAAGAAATAAAATGTGACGAATAAAATGTTTTGCAGGTAAAATAGGATTGTTCT 237
consensus_1137#1      GTGAAACTGGTGCCTTTTTAGGCAGAACAGCTAGTAGTTGGGGTAAAATAGGATTGTTCT 213
                       ** **   *        *  *  *** *    **  *   *******************

consensus_1137#0      ATTTGATATTTTACGGGGTGCTAGCCGCACTGGTTGCAATTTGTTTTTGGGGTTTTTTTC 297
consensus_1137#1      ATTTGATATTTTACGGGGTGCTAGCCGCACTGGTTGCAATTTGTTTTTGGGGTTTTTTTC 273
                      ************************************************************

consensus_1137#0      AAACGTTAGATCCAAGGATACCAAGATGGCAACTAGAACGTTCGATAATTGGGACAAATC 357
consensus_1137#1      AAACGTTAGATCCAAGGATACCAAGATGGCAACTAGAACGTTCGAAAAAAAA-------- 325
                      ********************************************* **            

consensus_1137#0      CTGGATTAGGATTTAGACCACAACCGCCATTAGAAAATGTGGAGAGTACGTTAATTTGGT 417
consensus_1137#1      ------------------------------------------------------------
                                                                                  

consensus_1137#0      ACAGAGGAACCGATAGCGAGAATTTTAAATATTGGATCGATTCTCTGGAATCGTTCTTAA 477
consensus_1137#1      ------------------------------------------------------------
                                                                                  

consensus_1137#0      AAGATTATATAACGCCAGGTTCGATTCCTGGTCTCGGTGCAAATATTAATAAATGTGATT 537
consensus_1137#1      ------------------------------------------------------------
                                                                                  

consensus_1137#0      ACAATCAACCACCACCTCCAGGTAAAGTGTGCGACGTTGATGTTAAAAATTGGTATCCTT 597
consensus_1137#1      ------------------------------------------------------------
                                                                                  

consensus_1137#0      GTACTAAAGAGAATAAATA 616
consensus_1137#1      -------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)