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Apis mellifera
cluster # 114 cluster # 114       Sequences # 7       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_114#0 length = 610 sequences # 5  
 consensus_114#1 length = 597 sequences # 2  
consensusID : consensus_114#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 610
fasta sequence 
                              [GAACTGAGCTTCTCGAGCAGTCTCGCGAGAATTCGCTTATTCCCACACTCGAATCCTCGGGGGGGATAAAAAGGAATGGTTTCGTCTAGGCTACGTTTATTGCACTTCTCGATATGTCTTCGATTCGCTGCTACGCCAAGCCCGGAAATCAACTGCTTCATAATTTACGCTAATACTTTCCCGAAAACGAAGGCGACATGTCACAATCGAGGAATGTTCGAAGTACCGCAAAAAGGGCACGTGGTATCCCGTGTCGAAGAAAAAAAAAAATATATTTCTATATATACACATCTTATAAAATTCTATATATATATAAAAAAAGAAGAAGAAGAAACAACTAATGCAACAAAATATCGCAATAAATAAGTCTCACAAAGGAACAGGATACCAACACGTCAAACCAAAACGAACTCGACCAAACAACACGCTTCCCCAAACTTTCCACTAACCATTCTACATAAAATTGCACGCCTCCTTAACTCCTTGGCACGTTAGGACGAATCTACAAATAAATTCATCCATTAAAAATATACAACCTACTTATTACCTCTACCTCTCTACGCGTAACAAATTGTTCCAGAATTTCAATTTTGAAACACCAAACTCAACG]

[+] EMBL BI507404             [GAACTGAGCTTCTCGAGCAGTCTCGCGAGAATTCGCTTATTCCCACACTCGAATCCTCGGGGGGGATAAAAAGGAATGGTTTCGTCTAGGCTACGTTTATTGCACTTCTCGATATGTCTTCGATTCGCTGCTACGCCAAGCCCGGAAATCAACTGCTTCATAATTTACGCTAATACTTTCCCGAAAACGAAGGCGACATGTCACAATCGAGGAATGTTCGAAGTACCGCAAAAAGGGCACGTGGTATCCCGTGTCGAAG  AAAAAAAAATATATTTCTATATATACACATCTTATAAAATTCTATATATATATAAAAAAAGAAGAAGAAGAAACAACTAATGCAACAAAATATCGCAATAAATAAGTCTCACAAAGGAACAGGATACCAACACGTCAAACCAAAACGAACTCGACCAAACAACACGCTTCCCCAAACTTTCCACTAACCATTCTACATAAAATTGCACGCCTCCTTAACTCCTTGGCACGTTAGGACGAATCTACAAATAAATTCATCCATTAAAAATATACAACCTACTTATTACCTCTACCTCTCTACGCGTAACAAATTGTTCCAGAATTTCAATTTTGAAACACCAAACTCAACG]
[+] EMBL BI504208             [GAACTGAGCTTCTCGAGCAGTCTCGCGAGAATTCGCTTATTCCCACACTCGAATCCTCGGGGGGGATAAAAAGGAATGGTTTCGTCTAGGCTACGTTTATTGCACTTCTCGATATGTCTTCGATTCGCTGCTACGCCAAGCCCGGAAATCAACTGCTTCATAATTTACGCTAATACTTTCCCGAAAACGAAGGCGACATGTCACAATCGAGGAATGTTCGAAGTACCGCAAAAAGGGCACGTGGTATCCCGTGTCGAAGAAAAAAAAAAATATATTTCTATATATACACATCTTATAAAATTCTATATATATATAAAAAA                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BI509203             [GAACTGAGCTTCTCGAGCAGTCTCGCGAGAATTCGCTTATTCCCACACTCGAATCCTCGGGGGGGATAAAAAGGAATGGTTTCGTCTAGGCTACGTTTATTGCACTTCTCGATATGTCTTCGATTCGCTGCTACGCCAAGCCCGGAAATCAACTGCTTCATAATTTACGCTAATACTTTCCCGAAAACGAAGGCGACATGTCACAATCGAGGAATGTTCGAAGTACCGCAAAAAGGGCACGTGGTATCCCGTGTCGAAGAAAAAAAAAAATATATTTCTATATATACACATCTTATAAAATTCTATATATATATAAAAAA                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BI506702             [        CTTCTCGAGCAGTCTCGCGAGAATTCGCTTATTCCCACACTCGAATCCTCGGGGGGGATAAAAAGGAATGGTTTCGTCTAGGCTACGTTTATTGCACTTCTCGATATGTCTTCGATTCGCTGCTACGCCAAGCCCGGAAATCAACTGCTTCATAATTTACGCTAATACTTTCCCGAAAACGAAGGCGACATGTCACAATCGAGGAATGTTCGAAGTACCGCAAAAAGGGCACGTGGTATCCCGTGTCGAAG  AAAAAAAAATATATTTCTATATATACACATCTTATAAAATTCTATATATATATAAAAAAAGAAGAAGAAGAAACAACTAATGCAACAAAATATCGCAATAAATAAGTCTCACAAAGGAACAGGATACCAACACGTCAAACCAAAACGAACTCGACCAAACAACACGCTTCCCCAAACTTTCCACTAACCATTCTACATAAAATTGCACGCCTCCTTAACTCCTTGGCACGTTAGGACGAATCTACAAATAAATTCATCCATTAAAAATATACAACCTACTTATTACCTCTACCTCTCTACGCGTAACAAATTGTTCCAGAATTTCAATTTTGAAACACCAAACTCAAC ]
[+] EMBL BI503139             [             CGAGCAGTCTCGCGAGAATTCGCTTATTCCCACACTCGAATCCTCGGGGGGGATAAAAAGGAATGGTTTCGTCTAGGCTACGTTTATTGCACTTCTCGATATGTCTTCGATTCGCTGCTACGCCAAGCCCGGAAATCAACTGCTTCATAATTTACGCTAATACTTTCCCGAAAACGAAGGCGACATGTCACAATCGAGGAATGTTCGAAGTACCGCAAAAAGGGCACGTGGTATCCCGTGTCGA  NNNAAAAAAAATATATTTCTATATATACACATCTTATAAAATTCTATATATATATAAAAAAAGAAGAAGAAGAAACNNNTAATGCAACAAAATATCGCAATAAATAAGTCTCACAAAGGAACAGGATACCAACACGTCAAACCAAAACGAACT                                                                                                                                                                                                      ]




>consensus_114#0
GAACTGAGCTTCTCGAGCAGTCTCGCGAGAATTCGCTTATTCCCACACTCGAATCCTCGG
GGGGGATAAAAAGGAATGGTTTCGTCTAGGCTACGTTTATTGCACTTCTCGATATGTCTT
CGATTCGCTGCTACGCCAAGCCCGGAAATCAACTGCTTCATAATTTACGCTAATACTTTC
CCGAAAACGAAGGCGACATGTCACAATCGAGGAATGTTCGAAGTACCGCAAAAAGGGCAC
GTGGTATCCCGTGTCGAAGAAAAAAAAAAATATATTTCTATATATACACATCTTATAAAA
TTCTATATATATATAAAAAAAGAAGAAGAAGAAACAACTAATGCAACAAAATATCGCAAT
AAATAAGTCTCACAAAGGAACAGGATACCAACACGTCAAACCAAAACGAACTCGACCAAA
CAACACGCTTCCCCAAACTTTCCACTAACCATTCTACATAAAATTGCACGCCTCCTTAAC
TCCTTGGCACGTTAGGACGAATCTACAAATAAATTCATCCATTAAAAATATACAACCTAC
TTATTACCTCTACCTCTCTACGCGTAACAAATTGTTCCAGAATTTCAATTTTGAAACACC
AAACTCAACG

consensusID : consensus_114#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 597
fasta sequence 
                              [GTATATAAAAAAAGAAGAAAAAGAAACAACTAATGCAACAAAATATCGATTGGTACACAGAACACAACTGTCGCAATAAATAAGTCTCACAAAGGAACAGGATACCAACACGTCAAACCAAAACGAACTCGACCAAACAACACGCTTCCCCAAACTTTCCACTAACCATTCTACATAAAATTGCACGCGTCCTTAACTCCTTGGCACGTTAGGACAATCTACAAANNNATTCATCCATTAAAAATATACAACCTACTTATTACCTCTACCTCTCTACGCGTAACAAATTGTTCCAAAATTTCAATTTTTGATCACGAAAACACACCAAACTCAACGAAAAAAAAAAACAAAAGAAGAAGAATCTATCCAAAACCTATCCATCCGGAAGAGAAACTGAATGATCGAAAGAAAGAATGCACTGCACCCTTGCCAGCCTATTGGGGCCTGGTAAGGGGCGTGAGTATCGTCGGTCATAGGCCGATCGTGGGTATCGGATGGTAGACGGCGCCCATGTCGAGNCCCTGTATCCCCAACAGGTCGCTCATCGAGTAAGTGAGAGTGGCGGCCCGAGACGCTGCCGCTGCCGCGACCGGGTGG]

[+] EMBL BI504881             [GTATATAAAAAAAGAAGAAAAAGAAACAACTAATGCAACAAAATATCGATTGGTACACAGAACACAACTGTCGCAATAAATAAGTCTCACAAAGGAACAGGATACCAACACGTCAAACCAAAACGAACTCGACCAAACAACACGCTTCCCCAAACTTTCCACTAACCATTCTACATAAAATTGCACGCCTCCTTAACTCCTTGGCACGTTAGGACAATCTACAAATAAATTCATCCATTAAAAATATACAACCTACTTATTACCTCTACCTCTCTACGCGTAACAAATTGTTCCAAAATTTCAATTTTTGATCACGAAAACACACCAAACTCAACG AAAAAAAAAACAAAAGAAGAAGAATCTATCCAAAACCTATCCATCCGGAAGAGAAACTGAATGATCGAAAGAAAGAATGCACTGCACCCTTGCCAGCCTATTGGGGCCTGGTAAGGGGCGTGAGTATCGTCGGTCATAGGCCGATCGTGGGTATCGGATGGTAGACGGCGCCCATGTCGAGNCCCTGTATCCCCAACAGGTCGCTCAT                                                    ]
[+] EMBL BI510291             [                                                                                                                                                                                            GTCCTTAACTCCTTGGCACGTTAGGACAATCTAC AANNNATTCATCCATTAAAAATATACAACCTACTTATTACCTCTACCTCTCTACGCGTAACAAATTGTTCCAAAATTTCAATTTTTGATCACGAAAACACACCAAACTCAACGAAAAAAAAAAACAAAAGAAGAAGAATCTATCCAAAACCTATCCATCCGGAAGAGAAACTGAATGATCGAAAGAAAGAATGCACTGCACCCTTGCCAGCCTATTGGGGCCTGGTAAGGGGCGTGAGTATCGTCGGTCATAGGCCGATCGTGGGTATCGGATGGTAGACGGCGCCCATGTCGAGGCCCTGTATCCCCAACAGGTCGCTCATCGAGTAAGTGAGAGTGGCGGCCCGAGACGCTGCCGCTGCCGCGACCGGGTGG]




>consensus_114#1
GTATATAAAAAAAGAAGAAAAAGAAACAACTAATGCAACAAAATATCGATTGGTACACAG
AACACAACTGTCGCAATAAATAAGTCTCACAAAGGAACAGGATACCAACACGTCAAACCA
AAACGAACTCGACCAAACAACACGCTTCCCCAAACTTTCCACTAACCATTCTACATAAAA
TTGCACGCGTCCTTAACTCCTTGGCACGTTAGGACAATCTACAAANNNATTCATCCATTA
AAAATATACAACCTACTTATTACCTCTACCTCTCTACGCGTAACAAATTGTTCCAAAATT
TCAATTTTTGATCACGAAAACACACCAAACTCAACGAAAAAAAAAAACAAAAGAAGAAGA
ATCTATCCAAAACCTATCCATCCGGAAGAGAAACTGAATGATCGAAAGAAAGAATGCACT
GCACCCTTGCCAGCCTATTGGGGCCTGGTAAGGGGCGTGAGTATCGTCGGTCATAGGCCG
ATCGTGGGTATCGGATGGTAGACGGCGCCCATGTCGAGNCCCTGTATCCCCAACAGGTCG
CTCATCGAGTAAGTGAGAGTGGCGGCCCGAGACGCTGCCGCTGCCGCGACCGGGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_114#0      GAACTGAGCTTCTCGAGCAGTCTCGCGAGAATTCGCTTATTCCCACACTCGAATCCTCGG 60
consensus_114#1      -------GTATATAAAAAAAGAAGAAAAAGAAACAACTAATGCAACA----AAATATCGA 49
                            *  * *  *  *        *  *  *   ** * * ***    **   *** 

consensus_114#0      GGGGGATAAAAAGGAATGGTTTCGTCTAGGCTACGTTT-ATTGCACTTCTCGATATGTCT 119
consensus_114#1      TTGGTACACAGAACACAACTGTCGCAATAAATAAGTCTCACAAAGGAACAGGATACCAAC 109
                       ** * * * *  *    * ***       ** ** * *        *  ****     

consensus_114#0      TCGATTCGCTGCTACG--CCAAGCCCGGAAATCAACTGCTTCATAATTTACGCTAATACT 177
consensus_114#1      ACGTCAAACCAAAACGAACTCGACCAAACAACACGCTTCCCCAAACTTTCCACTAACCAT 169
                      **     *    ***  *    **    **    ** *  ** * *** * ****   *

consensus_114#0      TTCCCGAAAACGAAGGCGACATGTCACAATCGAGGAATGTTCGAAGTACCGCAAAAAGGG 237
consensus_114#1      TCTACATAAAATTGCACGCGTCCTTAACTCCTTGGCACGTTAGGACAATCTACAAANNNA 229
                     *   *  ***      **     * *    *  ** * *** * *  * *   ***    

consensus_114#0      CACGTGGTATCCCGTGTCGAAGAAAAAAAAAAATAT-ATTTCTATATATACACATCTTAT 296
consensus_114#1      TTC-----ATCCATTAAAAATATACAACCTACTTATTACCTCTACCTCTCTACGCGTAAC 284
                       *     ****  *    *   * **   *  *** *  ****  * *  **   * * 

consensus_114#0      AAAATTCTATATATATATAAAAAAAGAAGAAGAAGAAACAACTAATGCAACAAAATATCG 356
consensus_114#1      AAATTGTTCCAAAATTTCAATTTTTGATCACGAAAACACACCAAACTCAACGAAAAAAAA 344
                     *** *  *  * *  *  **     **  * *** * *** * **  **** *** *   

consensus_114#0      CAATAAATAAGTCTCACAAAGGAACAGGATACCAACACGTC--AAACCAAAACGAACTCG 414
consensus_114#1      AAACAAAAGAAG---AAGAATCTATCCAAAACCTATCCATCCGGAAGAGAAACTGAAT-G 400
                      ** ***  *     *  **   *    * *** *  * **   **   ****  * * *

consensus_114#0      ACCAAACAACACGCTTCCCCAAACTTTCCACTAACCATT-----CTACATAAAATTGCAC 469
consensus_114#1      ATCGAAAGAAAGAATGCACTGCACCCTTGCCAGCCTATTGGGGCCTGGTAAGGGGCGTGA 460
                     * * **  * *   * * *   **  *   *   * ***     **    *     *   

consensus_114#0      GCCTCCTTAACTCCTTGGCACGTTAGGACGAATCTACAAATAAATTCATCCATTAAAAAT 529
consensus_114#1      GTATCGTCGG-TCATAGGC-CGATCGTGGGTATCGGATGGTAGACGGCGCCCATGTCGAG 518
                     *  ** *    ** * *** ** * *   * ***      ** *     **  *    * 

consensus_114#0      ATACAACCTACTTATTACCTCTACCTCTCTACGCGTAACAA-ATTGTTCCAGAATTTCAA 588
consensus_114#1      NCCCTGTATCCCCAACAGGTCGCTCATCGAGTAAGTGAGAGTGGCGGCCCGAGACGCTGC 578
                        *    * *  *  *  **   *         ** * *     *  **   *      

consensus_114#0      TTTTGAAACACCAAACTCAACG 610
consensus_114#1      CGCTGCCGCGACCGGGTGG--- 597
                        **   *  *    *


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)