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These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 1145 cluster # 1145       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1145#0 length = 475 sequences # 2  
 consensus_1145#1 length = 285 sequences # 1  
consensusID : consensus_1145#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 475
fasta sequence 
                              [CGCATGTGCAAAAAGTATGGCGTTAATGAAAACCATATACACGCATAATAAAATATATTATGATATGTTTAATTCACCGCATGAAAAGCCCACCAATCGTGTTTTTATTTATAATAATAATTCATATATTATCTTTGTACTTTTATGCAGTACTAGCTACTTGTTTCCTAGGTTCGAGCCTGA-CTTGAANCCGTCAGCTCTTTTCAAAATAATGTCGGNTTGTAGTCTGAACTCGGATTCCTTGACGTNGGATCTTANGCGGAAGTTTCTTAAAATTGTTGACAAAACAATCTTGAGTTTAAGCATCGCATATTTTCGGCCTACACATGATCGTGGNCCAGCCGAGAATGGCACAAATGCGTAATAGTGACGATTCGCGNNNTTTTCTGGTAAGAAATTGTCAGGATCGAAGNCATCTGGGTTAGGATAAATATGTGGCTGTCGGTGCAGTTTAAAAGTACCAATAACAACCGTA]

[+] EMBL BI512624             [CGCATGTGCAAAAAGTATGGCGTTAATGAAAACCATATACACGCATAATAAAATATATTATGATATGTTTAATTCACCGCATGAAAAGCCCACCAATCGTGTTTTTATTTATAATAATAATTCATATATTATCTTTGTACTTTTATGCAGTACTAGCTACTTGTTTCCTAGGTTCGAGCCTGATCTTGAATCCGTCAGCTCTTTTCAAAATAATGTCGGCTTGTAGTCTGAACTCGGATTCCTTGACGTCGGATCTTANGCGGAAGTTTCTTAAAATTGTTGACAAAACAATCTTGAGTTTAAGCATCGCATATTTTCGGCCTACACATGATCGTGGTCCAGCCGAGAATGGCACAAATGCGTAATAGTGACGATTCGCGNNNTTTTCTGGTAAGAAATTGTCAGGATCGAAGNCATCTGGGTTAGGATAAATATGTGGCTGTCGGTGCAGTTTAAAAGTACCAATAACAACCGTA]
[-] EMBL BG101548             [                                                                                                                                                                          tGTTCGAGCCTGA CTTG ANCCGTCAGCTCTTTTCAAAATAATGTCGGNTTGTAGTCTGAACTCGGATTCCTTGACGTNGGATCTTACGCGGAAGTTTCTTAAAATTGTTGACAAAACAATCTTGAGTTTAAGCATCGCATATTTTCGGCCTACACATGATCGTGGNCCAGCCGAGAATGGCACAAATGCGTAATAGTGACGATTCGCGGTTTTTTCTGGTAAGAAATTGTCAGGATCGAAGACATCTGGGTTAGGATAAATATGTGGCTGTCGGTGCA                          ]




>consensus_1145#0
CGCATGTGCAAAAAGTATGGCGTTAATGAAAACCATATACACGCATAATAAAATATATTA
TGATATGTTTAATTCACCGCATGAAAAGCCCACCAATCGTGTTTTTATTTATAATAATAA
TTCATATATTATCTTTGTACTTTTATGCAGTACTAGCTACTTGTTTCCTAGGTTCGAGCC
TGACTTGAANCCGTCAGCTCTTTTCAAAATAATGTCGGNTTGTAGTCTGAACTCGGATTC
CTTGACGTNGGATCTTANGCGGAAGTTTCTTAAAATTGTTGACAAAACAATCTTGAGTTT
AAGCATCGCATATTTTCGGCCTACACATGATCGTGGNCCAGCCGAGAATGGCACAAATGC
GTAATAGTGACGATTCGCGNNNTTTTCTGGTAAGAAATTGTCAGGATCGAAGNCATCTGG
GTTAGGATAAATATGTGGCTGTCGGTGCAGTTTAAAAGTACCAATAACAACCGTA

consensusID : consensus_1145#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 285
fasta sequence 
                              [ATTCGAGCCTGACTTGATCCGTCAGCTCTTTTCAAAATAATGNCGGNTTGTAGNCTGAACTCGGATTCCTTGACGTCGGATCTTACGCGGAAGNTTCTTAAAATNGTTGACNAAACAATCTTGAGTTTAAGCATCTGCATATTTTCGGGCCTACACATGATCGNGGACCANCCGAGAATGNCACAAATGCGNAATAGTGACNATTCCCGGTTTTTTCTGGTAAGAAATTGTCAGGATCGAANACNTCTGGNTTAGGATAAATATGNAGGNGTGTCGGNGCAGATT]

[-] EMBL BG101579             [ATTCGAGCCTGACTTGATCCGTCAGCTCTTTTCAAAATAATGNCGGNTTGTAGNCTGAACTCGGATTCCTTGACGTCGGATCTTACGCGGAAGNTTCTTAAAATNGTTGACNAAACAATCTTGAGTTTAAGCATCTGCATATTTTCGGGCCTACACATGATCGNGGACCANCCGAGAATGNCACAAATGCGNAATAGTGACNATTCCCGGTTTTTTCTGGTAAGAAATTGTCAGGATCGAANACNTCTGGNTTAGGATAAATATGNAGGNGTGTCGGNGCAGATT]




>consensus_1145#1
ATTCGAGCCTGACTTGATCCGTCAGCTCTTTTCAAAATAATGNCGGNTTGTAGNCTGAAC
TCGGATTCCTTGACGTCGGATCTTACGCGGAAGNTTCTTAAAATNGTTGACNAAACAATC
TTGAGTTTAAGCATCTGCATATTTTCGGGCCTACACATGATCGNGGACCANCCGAGAATG
NCACAAATGCGNAATAGTGACNATTCCCGGTTTTTTCTGGTAAGAAATTGTCAGGATCGA
ANACNTCTGGNTTAGGATAAATATGNAGGNGTGTCGGNGCAGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1145#0      CGCATGTGCAAAAAGTATGGCGTTAATGAAAACCATATACACGCATAATAAAATATATTA 60
consensus_1145#1      ------------------------------------------------------------
                                                                                  

consensus_1145#0      TGATATGTTTAATTCACCGCATGAAAAGCCCACCAATCGTGTTTTTATTTATAATAATAA 120
consensus_1145#1      ------------------------------------------------------------
                                                                                  

consensus_1145#0      TTCATATATTATCTTTGTACTTTTATGCAGTACTAGCTACTTGTTTCCTAGGTTCGAGCC 180
consensus_1145#1      ---------------------------------------------------ATTCGAGCC 9
                                                                          ********

consensus_1145#0      TGACTTGAANCCGTCAGCTCTTTTCAAAATAATGTCGGNTTGTAGTCTGAACTCGGATTC 240
consensus_1145#1      TGACTTGA-TCCGTCAGCTCTTTTCAAAATAATGNCGGNTTGTAGNCTGAACTCGGATTC 68
                      ********  ************************ ********** **************

consensus_1145#0      CTTGACGTNGGATCTTANGCGGAAGTTTCTTAAAATTGTTGACAAAACAATCTTGAGTTT 300
consensus_1145#1      CTTGACGTCGGATCTTACGCGGAAGNTTCTTAAAATNGTTGACNAAACAATCTTGAGTTT 128
                      ******** ******** ******* ********** ****** ****************

consensus_1145#0      AAGCATC-GCATATTTTCGG-CCTACACATGATCGTGGNCCAGCCGAGAATGGCACAAAT 358
consensus_1145#1      AAGCATCTGCATATTTTCGGGCCTACACATGATCGNGGACCANCCGAGAATGNCACAAAT 188
                      ******* ************ ************** ** *** ********* *******

consensus_1145#0      GCGTAATAGTGACGATTCGCGNNNTTTTCTGGTAAGAAATTGTCAGGATCGAAGNCATCT 418
consensus_1145#1      GCGNAATAGTGACNATTCCCGGTTTTTTCTGGTAAGAAATTGTCAGGATCGAANACNTCT 248
                      *** ********* **** **   *****************************  * ***

consensus_1145#0      GGGTTAGGATAAATATGT--GGCTGTCGGTGCAGTTTAAAAGTACCAATAACAACCGTA 475
consensus_1145#1      GGNTTAGGATAAATATGNAGGNGTGTCGGNGCAGATT---------------------- 285
                      ** **************   *  ****** **** **


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)