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These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 1146 cluster # 1146       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1146#0 length = 432 sequences # 1  
 consensus_1146#1 length = 400 sequences # 2  
consensusID : consensus_1146#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence 
                              [GCCACGTGTATGTATCGTTCTTAGATTTTAAAATAAAGATAAAAATCGTATTTCATCAAATATTTAGTTATTATTTTTTTATGTACTTATAATCAAAATGCCTCCTAAATTTGATCCTAATGAAATTAAGAAAGTTTATTTGCGATGCGTTGGAGGTGAAGTAGGAGCAACTTCATCTTTAGCTCCGAAAATTGGCCCTCTTGGTTTGTCTCCAAAAAAAGTTGGTGATGATATTGCTAAAGCTACTAGTGATTGGAAGGGTTTGAAAATTACTGTACAATTAACAATTCAAAACAGACAAGCTACAATTTCAGTAGTTCCATCTGCTGCATCATTAATTATTAAATCATTGAAAGAACCTCCAAGAGATCGCAAAAGACAGAAAAATATCAAGCATAATGGAAATTTATCATTTGATGATATTGTTTCTAT]

[+] EMBL BI514522             [GCCACGTGTATGTATCGTTCTTAGATTTTAAAATAAAGATAAAAATCGTATTTCATCAAATATTTAGTTATTATTTTTTTATGTACTTATAATCAAAATGCCTCCTAAATTTGATCCTAATGAAATTAAGAAAGTTTATTTGCGATGCGTTGGAGGTGAAGTAGGAGCAACTTCATCTTTAGCTCCGAAAATTGGCCCTCTTGGTTTGTCTCCAAAAAAAGTTGGTGATGATATTGCTAAAGCTACTAGTGATTGGAAGGGTTTGAAAATTACTGTACAATTAACAATTCAAAACAGACAAGCTACAATTTCAGTAGTTCCATCTGCTGCATCATTAATTATTAAATCATTGAAAGAACCTCCAAGAGATCGCAAAAGACAGAAAAATATCAAGCATAATGGAAATTTATCATTTGATGATATTGTTTCTAT]




>consensus_1146#0
GCCACGTGTATGTATCGTTCTTAGATTTTAAAATAAAGATAAAAATCGTATTTCATCAAA
TATTTAGTTATTATTTTTTTATGTACTTATAATCAAAATGCCTCCTAAATTTGATCCTAA
TGAAATTAAGAAAGTTTATTTGCGATGCGTTGGAGGTGAAGTAGGAGCAACTTCATCTTT
AGCTCCGAAAATTGGCCCTCTTGGTTTGTCTCCAAAAAAAGTTGGTGATGATATTGCTAA
AGCTACTAGTGATTGGAAGGGTTTGAAAATTACTGTACAATTAACAATTCAAAACAGACA
AGCTACAATTTCAGTAGTTCCATCTGCTGCATCATTAATTATTAAATCATTGAAAGAACC
TCCAAGAGATCGCAAAAGACAGAAAAATATCAAGCATAATGGAAATTTATCATTTGATGA
TATTGTTTCTAT

consensusID : consensus_1146#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 400
fasta sequence 
                              [AGGCGTGGTCNCGGCCGAGGTACTTATAATCAAAATGCCTCCTAAATTTGATCCTAATGAAATTAAGAAAGTTTATTTGCGATGCGTTGGAGGTGAAGTAGGAGCAACTTCATCTTTAGCTCCGAAAATTGGCCCTCTTGGTTTGTCTCCAAAAAAGTTGGTNATNATANTGCTAAAGCTAATAGGTGATTGGAAGGGTTTGAAAANTACTGTACAATTANCAATTCANAACAGACAANGCTACAATTTCAGTAGTTCCATCTGNTGCATCATTAANTATTAAATCATTGAAAGAACCTNCAAGAGATCGCAAAAGACAGAAAAATATCAAGCATAATGGAAATTTATCATTTGATGATAATGTTTCTATTGCTCGATCAATGAGACCAAGATCTATGTN]

[-] EMBL BG101546             [AGGCGTGGTCNCGGCCGAGGTACTTATAATCAAAATGCCTCCTAAATTTGATCCTAATGAAATTAAGAAAGTTTATTTGCGATGCGTTGGAGGTGAAGTAGGAGCAACTTCATCTTTAGCTCCGAAAATTGGCCCTCTTGGTTTGTCTCCAAAAAAGTTGGTGATGATATTGCTAAAGCTACTA GTGATTGGAAGGGTTTGAAAATTACTGTACAATTAACAATTCAAAACAGACAANGCTACAATTTCAGTAGTTCCATCTGCTGCATCATTAATTATTAAATCATTGAAAGAACCTCCAAGAGATCGCAAAAGACAGAAAAATATCAAGCATAATGGAAATTTATCATTTGATGATATTGTTTCTATTGCTCGATCAATGAGACCAAGATCTATGT ]
[-] EMBL BG101594             [                                                                                                                                                                GTNATNATANTGTTAAAGCTAATAGGTGATTGGAAGGGTTTGAAAANTACTGTACAATTANCAATTCANAACAGACAA GCTACAATTTCAGTAGTTCCATCTGNTGCATCATTAANTATTAAATCATTGAAAGAACCTNCAAGAGATCGCAAAAGACAGAAAAATATCAAGCATAATGGAAATTTATCATTTGATGATAATGTTTCTATTGCTCGATCAATGAGACCAAGATCTATGTN]




>consensus_1146#1
AGGCGTGGTCNCGGCCGAGGTACTTATAATCAAAATGCCTCCTAAATTTGATCCTAATGA
AATTAAGAAAGTTTATTTGCGATGCGTTGGAGGTGAAGTAGGAGCAACTTCATCTTTAGC
TCCGAAAATTGGCCCTCTTGGTTTGTCTCCAAAAAAGTTGGTNATNATANTGCTAAAGCT
AATAGGTGATTGGAAGGGTTTGAAAANTACTGTACAATTANCAATTCANAACAGACAANG
CTACAATTTCAGTAGTTCCATCTGNTGCATCATTAANTATTAAATCATTGAAAGAACCTN
CAAGAGATCGCAAAAGACAGAAAAATATCAAGCATAATGGAAATTTATCATTTGATGATA
ATGTTTCTATTGCTCGATCAATGAGACCAAGATCTATGTN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1146#0      GCCACGTGTATGTATCGTTCTTAGATTTTAAAATAAAGATAAAAATCGTATTTCATCAAA 60
consensus_1146#1      ------------------------------------------------------------
                                                                                  

consensus_1146#0      TATTTAGTTATTATTTT--TTTATGTACTTATAATCAAAATGCCTCCTAAATTTGATCCT 118
consensus_1146#1      -----AGGCGTGGTCNCGGCCGAGGTACTTATAATCAAAATGCCTCCTAAATTTGATCCT 55
                           **   *  *        * ************************************

consensus_1146#0      AATGAAATTAAGAAAGTTTATTTGCGATGCGTTGGAGGTGAAGTAGGAGCAACTTCATCT 178
consensus_1146#1      AATGAAATTAAGAAAGTTTATTTGCGATGCGTTGGAGGTGAAGTAGGAGCAACTTCATCT 115
                      ************************************************************

consensus_1146#0      TTAGCTCCGAAAATTGGCCCTCTTGGTTTGTCTCCAAAAAAAGTTGGTGATGATATTGCT 238
consensus_1146#1      TTAGCTCCGAAAATTGGCCCTCTTGGTTTGTCTCCAAAAAA-GTTGGTNATNATANTGCT 174
                      ***************************************** ****** ** *** ****

consensus_1146#0      AAAGCTACTAG-TGATTGGAAGGGTTTGAAAATTACTGTACAATTAACAATTCAAAACAG 297
consensus_1146#1      AAAGCTAATAGGTGATTGGAAGGGTTTGAAAANTACTGTACAATTANCAATTCANAACAG 234
                      ******* *** ******************** ************* ******* *****

consensus_1146#0      ACAAG-CTACAATTTCAGTAGTTCCATCTGCTGCATCATTAATTATTAAATCATTGAAAG 356
consensus_1146#1      ACAANGCTACAATTTCAGTAGTTCCATCTGNTGCATCATTAANTATTAAATCATTGAAAG 294
                      ****  ************************ *********** *****************

consensus_1146#0      AACCTCCAAGAGATCGCAAAAGACAGAAAAATATCAAGCATAATGGAAATTTATCATTTG 416
consensus_1146#1      AACCTNCAAGAGATCGCAAAAGACAGAAAAATATCAAGCATAATGGAAATTTATCATTTG 354
                      ***** ******************************************************

consensus_1146#0      ATGATATTGTTTCTAT------------------------------ 432
consensus_1146#1      ATGATAATGTTTCTATTGCTCGATCAATGAGACCAAGATCTATGTN 400
                      ****** *********


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)