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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1162#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence
[TAGTTAGTGAAAAACTTGAAAAACCTTCTCAAGCTGACTTGATTGCAAAATCTGATAATGATATATTAGCAAAAATTAATAAACTACTGAGTGGTGTACCACCACCACCTAAACTTACAATTTGTAGAATAGATTGCTCAGAATTATTATTACGTATTTATGAGAATCAACATTTATTTTGGACACCATGTGTATTACCAGAAAAATATATACAACAAGATCTAAATAGAGAACAACAAAAAGAAAATATTAGTACAAATAATTATCGTCATATCAAAAGCACATCTAGAAATTTAAGTACAGCTTTTGATGCTTGTGATCCACAATATCAAAGTAATATTAGTAATAATATAGATACAGTAGATTTAAAAAATATTTGCAGTGATAATTTTAGAATAAAGAAAGCAGTTCCTAACAATGAGCAAGTACAAGCAACTACAACTGTAAACAAGGTAAAACAAGAATCAGTTGTAATTGCACCACAACAATCATTACTTTATTTTACTATTAATGAAAAAAATGTTAATACTTTGACATGGCCTGAAGCATATTATCATAAATTTCATGG]
[+] EMBL BE844593 [TAGTTAGTGAAAAACTTGAAAAACCTTCTCAAGCTGACTTGATTGCAAAATCTGATAATGATATATTAGCAAAAATTAATAAACTACTGAGTGGTGTACCACCACCACCTAAACTTACAATTTGTAGAATAGATTGCTCAGAATTATTATTACGTATTTATGAGAATCAACATTTATTTTGGACACCATGTGTATTACCAGAAAAATATATACAACAAGATCTAAATAGAGAACAACAAAAAGAAAATATTAGTACAAATAATTATCGTCATATCAAAAGCACATCTAGAAATTTAAGTACAGCTTTTGATGCTTGTGATCCACAATATCAAAGTAATATTAGTAATAATATAGATACAGTAGATTTAAAAAATATTTGCAGTGATAATTTTAGAATAAAGAAAGCAGTTCCTAACAATGAGCAAGTACAAGCAACTACAACTGTAAACAAGGTAAAACAAGAATCAGTTGTAATTGCACCACAACAATCATTACTTTATTTTACTATTAATGAAAAAAATGTTAATACTTTGACATGGCCTGAAGCATATTATCATAAATTTCATGG]
consensusID : consensus_1162#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence
[ACTGTAAACAAGGTAAAACAAGAATCAGTTGTAATTGCACCACAACAATCATTACTTTATTTTACTATTAATGAAAAAAATGTTAATACTTTGACATGGCCTGAAGCATATTATCATAAATTTCATGGAATACATTATAACAGAAATAAAGCAGTTGAAGAATTTGAAAGCCTTACATCAAAATTGTGTAGTAGGTATATAGGAGCTGAAACTCAATCTACATGTACTGTATGGTTTTCTAAACCAGCACCAGGAAGTGCTAAAAAACGAAATCTTTTAGCTAATCGAAATAATGGTCAAAGTCCAGGAAAAAGATTAAGTCATTTAACAAAGAGACGAAAAGTATTCTCTAGTGCGAATTTACAAGGATTAGCTCTTAATAATAAAAAACTCTTAGTATTAAATATTAAAAAACCTACAATTAAAAAAGGCAAAAGTCCGCGAGGTAAAAGTCCACGGGGCAAAAGTCCAAGGGGAACTCCTAGAAGTTCAACAAAGAAAAAAGTGGCTCGACGACTTATTTTAGATGGATCTAATCCATTAAAATCTAAGATTGAAACATCTAA]
[-] EMBL BE844592 [ACTGTAAACAAGGTAAAACAAGAATCAGTTGTAATTGCACCACAACAATCATTACTTTATTTTACTATTAATGAAAAAAATGTTAATACTTTGACATGGCCTGAAGCATATTATCATAAATTTCATGGAATACATTATAACAGAAATAAAGCAGTTGAAGAATTTGAAAGCCTTACATCAAAATTGTGTAGTAGGTATATAGGAGCTGAAACTCAATCTACATGTACTGTATGGTTTTCTAAACCAGCACCAGGAAGTGCTAAAAAACGAAATCTTTTAGCTAATCGAAATAATGGTCAAAGTCCAGGAAAAAGATTAAGTCATTTAACAAAGAGACGAAAAGTATTCTCTAGTGCGAATTTACAAGGATTAGCTCTTAATAATAAAAAACTCTTAGTATTAAATATTAAAAAACCTACAATTAAAAAAGGCAAAAGTCCGCGAGGTAAAAGTCCACGGGGCAAAAGTCCAAGGGGAACTCCTAGAAGTTCAACAAAGAAAAAAGTGGCTCGACGACTTATTTTAGATGGATCTAATCCATTAAAATCTAAGATTGAAACATCTAA]
consensusID : consensus_1162#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence
[TTTTGCCCCGTGGACTTTTACCTCGCGGACTTTTGCCTTTTTTAATTGTAGGTTTTCTACACATAAAAAAAAAAAAGATAAATTTATATTTAATAAGTTTTAAATTAATAAAATCTTTTCAAAATATATTTCACAACTTTGATACGTACTTAATATTTAATACTAAGAGTTTTTTATTATTAAGAGCTAATCCTTGTAAATTCGCACTAGNGAATACTTTTCGTCTCTTTGTTAAATGACTTAATCTTTTTCCTGGACTTTGACCATTATTTCGATTAGCTAAAAGATTTCGTTTTTTAGCACTTCCTGNNNCTGGTTTAGAAAACCATACAGTACATGTAGATTGAGTTTCAGCTCCTATATACCTACTACACAATTTTGATGTAAGNNTTTCAAATTCTTCAACTGCTTTATTTCTGTTATAACTAAAACCACAAAAGTATTATTATGTATCTTTATACAGATATTATAAATTATATATATA]
[+] EMBL BI516580 [TTTTGCCCCGTGGACTTTTACCTCGCGGACTTTTGCCTTTTTTAATTGTAGGTTTTCTACACATAAAAAAAAAAAAGATAAATTTATATTTAATAAGTTTTAAATTAATAAAATCTTTTCAAAATATATTTCACAACTTTGATACGTACTTAATATTTAATACTAAGAGTTTTTTATTATTAAGAGCTAATCCTTGTAAATTCGCACTAGNGAATACTTTTCGTCTCTTTGTTAAATGACTTAATCTTTTTCCTGGACTTTGACCATTATTTCGATTAGCTAAAAGATTTCGTTTTTTAGCACTTCCTGNNNCTGGTTTAGAAAACCATACAGTACATGTAGATTGAGTTTCAGCTCCTATATACCTACTACACAATTTTGATGTAAGNNTTTCAAATTCTTCAACTGCTTTATTTCTGTTATAACTAAAACCACAAAAGTATTATTATGTATCTTTATACAGATATTATAAATTATATATATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1162#0 TAGTTAGTGAAAAACTTGAAAAACCTTCTCAAGCTGACTTGATTGCAAAATCTGATAATG 60
consensus_1162#1 ---ACTGTAAACAAGGTAAAACAAGAATCAGTTGTAATTGCACCACAACAATC-ATTACT 56
consensus_1162#2 ------------------------------------------------------------
consensus_1162#0 ATATATTAGCAAAAATTAATAAACTACTGAG----TGGTGTA-CCACCACCACCTAAACT 115
consensus_1162#1 TTATTTTACTATTAATGAAAAAAATGTTAATACTTTGACATGGCCTGAAGCATATTATCA 116
consensus_1162#2 --------------------------------------------TTTTGCCCCGTGGACT 16
* * *
consensus_1162#0 TACAATTTGTAGAATAGATTGCT-CAGAATTA---TTATTACGTATTTATGAGAATCAAC 171
consensus_1162#1 TAAATTTCATGGAATACATTATAACAGAAATAAAGCAGTTGAAGAATTTGAAAGCCTTAC 176
consensus_1162#2 TTTACCTCGCGGACTTTTGCCTTTTTTAATTGTAGGTTTTCTACACATAAAAAAAAAAAA 76
* * * ** * ** * ** * * * *
consensus_1162#0 ATTTATTTTGGAC--ACCATGTGTATTACCAGAAAAATATATACAACAAGATCTAAATAG 229
consensus_1162#1 ATCAAAATTGTGT--AGTAGGTATATAGGAGCTGAAACTCAATCTACATGTACTGTATGG 234
consensus_1162#2 GATAAATTTATATTTAATAAGTTTTAAATTAATAAAATCTTTTCAAAATATATTTCACAA 136
* ** * * ** * *** * * * * *
consensus_1162#0 A-----GAACAACAAAAAGAAAATATTAGTACAAATAAT-TATCGTCATATCAAAAGCAC 283
consensus_1162#1 TTTTCTAAACCAGCACCAGGAAGTGCTAAAAAACGAAATCTTTTAGCTAATCGAAATAAT 294
consensus_1162#2 CTTT---GATACGTACTTAATATT--TAATACTAAGAGTTTTTTATTATTAAGAGCTAAT 191
* * * * ** * * * * * * *
consensus_1162#0 ATCTAGAAATT-----TAAGTACAGCTTTTGATGCTTGTGATCCACAATATCAAAGTAAT 338
consensus_1162#1 GGTCA-AAGTC-----CAGGAAAAAGATTAAGT-CATTTAACAAAGAGACGAAAAGTATT 347
consensus_1162#2 CCTTGTAAATTCGCACTAGNGAATACTTTTCGTCTCTTTGTTAAATGACTTAATCTTTTT 251
** * * * ** * * * * * * *
consensus_1162#0 AT-TAGTAATAAT--ATAGATACAGTAGATTTAAAAAATATTT-----GCAGTGATAATT 390
consensus_1162#1 CTCTAGTGCGAAT--TTACAAGGATTAGCTCTTAATAATAAA------AAACTCTTAGTA 399
consensus_1162#2 CCTGGACTTTGACCATTATTTCGATTAGCTAAAAGATTTCGTTTTTTAGCACTTCCTGNN 311
* ** * *** * * * * *
consensus_1162#0 TTAGA-ATAAAGAAAGCAGTTCCTAACAATGAGCAAGTACAAGCAACTACAACTGTAAAC 449
consensus_1162#1 TTAAATATTAAAAAACCTACAATTAA-AAAAGGCAAAAGTCCGCGAG-GTAAAAGTCCAC 457
consensus_1162#2 NCTGGTTTAGAAAACCATACAGTACATGTAGATTGAGTTTCAGCTCC--TATATACCTAC 369
* * ** * * ** * **
consensus_1162#0 AAGGTAAAA---CAAGAATCAGTTGTAATTGCACCACAACAATCATTACTTTATTTTACT 506
consensus_1162#1 GGGGCAAAAGTCCAAGGGGAACTCCTAGAAGTTCAACAAAGA--AAAAAGTGGCTCGACG 515
consensus_1162#2 TACACAATTTTGATGTAAGNNTTTCAAATTCTTCAACTGC-----TTTATTTCTGTTATA 424
** * * * ** * *
consensus_1162#0 ATTAATGAAAAAAATGT-TAATACTTTGACAT---GGCCTGAAGCATATTATCATAAATT 562
consensus_1162#1 ACTTATTTTAGATGGATCTAATCCATTAAAATCTAAGATTGAAACATCTAA--------- 566
consensus_1162#2 ACTAAAACCACAAAAGTATTATTATGTATCTTT--ATACAGATATTATAAATTATATATA 482
* * * * * * * ** * * ** *
consensus_1162#0 TCATGG 568
consensus_1162#1 ------
consensus_1162#2 TA---- 484
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |