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Apis mellifera
cluster # 1174 cluster # 1174       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1174#0 length = 535 sequences # 1  
 consensus_1174#1 length = 406 sequences # 2  
consensusID : consensus_1174#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 535
fasta sequence 
                              [TTTATGTCATCCACGTTTCAAGGATGAATTTATTCTTAAAAACTAATTTAGAATTATTCNNNATTATTCAGAATTTCTGGAAACGTGGTGGTGTGGAGCTCAAAACGGTGGGTGCTCGTGTTTCTCTTGCCAATGTATAATACTTTTTATCCTTAACGGTCCCTTCCATCCGCGCGGACATCCGGTTCTTATCGACCATTGCCACCACCGGTAGTAACGCGAGACGATATTTTCTTAACGCTGTATAGGAAACGTATATATATACGCGCCGGGAAAAATTATCCTCCCGACACTTGGACGCAAGCACGCTCGTCCAATGTCGGTTTTCTTCGATCGTTCATTTTTTTTCCGAGGAAGCAATCGATTTTATATCGATTACACGAACGAATATACGGTTCCTTACGATTCGTAGAAAATATCGTCGTCGACGTGGTGATTTGTATATTTGGACATTTATATTCGGGAGAGAAGTCGGTGATTAGAAGTGCAGTTCGCCAAACAATCGAAGTTGTTATTATTATTATTATTATTACTA]

[+] EMBL BI513144             [TTTATGTCATCCACGTTTCAAGGATGAATTTATTCTTAAAAACTAATTTAGAATTATTCNNNATTATTCAGAATTTCTGGAAACGTGGTGGTGTGGAGCTCAAAACGGTGGGTGCTCGTGTTTCTCTTGCCAATGTATAATACTTTTTATCCTTAACGGTCCCTTCCATCCGCGCGGACATCCGGTTCTTATCGACCATTGCCACCACCGGTAGTAACGCGAGACGATATTTTCTTAACGCTGTATAGGAAACGTATATATATACGCGCCGGGAAAAATTATCCTCCCGACACTTGGACGCAAGCACGCTCGTCCAATGTCGGTTTTCTTCGATCGTTCATTTTTTTTCCGAGGAAGCAATCGATTTTATATCGATTACACGAACGAATATACGGTTCCTTACGATTCGTAGAAAATATCGTCGTCGACGTGGTGATTTGTATATTTGGACATTTATATTCGGGAGAGAAGTCGGTGATTAGAAGTGCAGTTCGCCAAACAATCGAAGTTGTTATTATTATTATTATTATTACTA]




>consensus_1174#0
TTTATGTCATCCACGTTTCAAGGATGAATTTATTCTTAAAAACTAATTTAGAATTATTCN
NNATTATTCAGAATTTCTGGAAACGTGGTGGTGTGGAGCTCAAAACGGTGGGTGCTCGTG
TTTCTCTTGCCAATGTATAATACTTTTTATCCTTAACGGTCCCTTCCATCCGCGCGGACA
TCCGGTTCTTATCGACCATTGCCACCACCGGTAGTAACGCGAGACGATATTTTCTTAACG
CTGTATAGGAAACGTATATATATACGCGCCGGGAAAAATTATCCTCCCGACACTTGGACG
CAAGCACGCTCGTCCAATGTCGGTTTTCTTCGATCGTTCATTTTTTTTCCGAGGAAGCAA
TCGATTTTATATCGATTACACGAACGAATATACGGTTCCTTACGATTCGTAGAAAATATC
GTCGTCGACGTGGTGATTTGTATATTTGGACATTTATATTCGGGAGAGAAGTCGGTGATT
AGAAGTGCAGTTCGCCAAACAATCGAAGTTGTTATTATTATTATTATTATTACTA

consensusID : consensus_1174#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 406
fasta sequence 
                              [TTCTCGAGACGCGAATGTAAATGTATCTCGACTTTCTCAACGAGATTTCCTCGAATCGAAGTGATTTTTGCGAAAGGGGAGAGGAACAGTGGTAGAAAGTTTAAGAAAGAAAGAGAGAGAGAGATGTTTCCCTTTCCAACGGAAAAGTTGGAGAGAAAAGCGTGCACGAAGGATTCGTGGAAAGTTTTGCCCTCGGGGAAGAAACGTGGAAGGGACGTGGAAGGCCACGAACGAGAACACGAACGAGCCAACGAACGAAATCACAAGTTTTGCGCTGTGCTCGAAAATAACAAAAACGAGTAATAATAATAATAGTAATAATAATAATAATAATAACAACTTCGATTGTTTGGCGAACTGCACTTCTAATCACCGACTTCTCTCCCGAANNNNNAAAAAAAAAAAA]

[+] EMBL BI504518             [TTCTCGAGACGCGAATGTAAATGTATCTCGACTTTCTCAACGAGATTTCCTCGAATCGAAGTGATTTTTGCGAAAGGGGAGAGGAACAGTGGTAGAAAGTTTAAGAAAGAAAGAGAGAGAGAGATGTTTCCCTTTCCAACGGAAAAGTTGGAGAGAAAAGCGTGCACGAAGGATTCGTGGAAAGTTTTGCCCTCGGGGAAGAAACGTGGAAGGGACGTGGAAGGCCACGAACGAGAACACGAACGAGCCAACGAACGAAATCACAAGTTTTGCGCTGTGCTCGAAAATAACAAAAACGAGTAATAATAATAATAGTAATAATAATAATAATAATAACAACTTCGATTGTTTGGCGAACTGCACTTCTAATCACCGACTTCTCTCCCGAANNNNNAAAAAAAAAAAA]
[+] EMBL BI509191             [TTCTCGAGACGCGAATGTAAATGTATCTCGACTTTCTCAACGAGATTTCCTCGAATCGAAGTGATTTTTGCGAAAGGGGAGAGGAACAGTGGTAGAAAGTTTAAGAAAGAAAGAGAGAGAGAGATGTTTCCCTTTCCAACGGAAAAGTTGGAGAGAAAAGCGTGCACGAAGGATTCGTGGAAAGTTTTGCCCTCGGGGAAGAAACGTGGAAGGGACGTGGAAGGCCACGAACGAGAACACGAACGAGCCAACGAACGAAATCACAAGTTTTGCGCTGTGCTCGAAAATAACAAAAACGAGTAATAATAATAATAGTAATAATAATAATAATAATAACAACTTCGATTGTTTGGCGAACTGCACTTCTAATCACC                                ]




>consensus_1174#1
TTCTCGAGACGCGAATGTAAATGTATCTCGACTTTCTCAACGAGATTTCCTCGAATCGAA
GTGATTTTTGCGAAAGGGGAGAGGAACAGTGGTAGAAAGTTTAAGAAAGAAAGAGAGAGA
GAGATGTTTCCCTTTCCAACGGAAAAGTTGGAGAGAAAAGCGTGCACGAAGGATTCGTGG
AAAGTTTTGCCCTCGGGGAAGAAACGTGGAAGGGACGTGGAAGGCCACGAACGAGAACAC
GAACGAGCCAACGAACGAAATCACAAGTTTTGCGCTGTGCTCGAAAATAACAAAAACGAG
TAATAATAATAATAGTAATAATAATAATAATAATAACAACTTCGATTGTTTGGCGAACTG
CACTTCTAATCACCGACTTCTCTCCCGAANNNNNAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1174#0      TTTATGTCATCCACGTTTCAAGGATGAATTTATTCTTAAAAACTAATTTAGAATTATTCN 60
consensus_1174#1      -------TTCTCGAGACGCGAATGTAAATGTATCTCGACTTTCTCAACGAGATTTCCTCG 53
                                 *  *   * *   * *** ***    *    ** *   *** **  ** 

consensus_1174#0      NNATTATTCAGAATTTCTGGAAACGTGGTGGTGTGGAGCTCAAAACGGTGGGTGCTCGTG 120
consensus_1174#1      AATCGAAGTGATTTTTGCGAAAGGGGAGAGGAACAGTGGTAGAAAGTTTAAGAAAGAAAG 113
                           *       ***  * **  *  * **    * * *  ***   *  *       *

consensus_1174#0      TTTCTCTTGCCAATGTATAATACTTTTTATCCTTAACGGTCCCTTCCATCCGCGCGGACA 180
consensus_1174#1      AGAG----AGAGAGATGTTTCCCTTTCCAACGG-AAAAGTTGGAGAGAAAAGCGTGCACG 168
                                  *  * *    ****  * *   **  **       *   *** * ** 

consensus_1174#0      TCCGGTTCTTATCGACCATTGCCACCACCGGTAGTAACGCGAGACGATATTTTCTTAACG 240
consensus_1174#1      AAGGATTCGTGGAAAGTTTTGCCCTCGG-GGAAGAAACGTGGAAGGGACGTGGAAGGCCA 227
                         * *** *    *   *****  *   ** ** **** *  * *    *       * 

consensus_1174#0      CTGTATAGGAAACGTATATATATACGCGCCGGGAAAAATTATCCTCCCGACACTTGGACG 300
consensus_1174#1      CGAACGAGAACACGAACGAGCCAACGAACGAAATCACAAGTTTTGCGCTGTGCTCGAAAA 287
                      *     ** * *** *       ***  *      * *   *   * *    ** * *  

consensus_1174#0      CAAGCACGCTCGTCCAATGTCGGTTTTCTTCGATCGTTCATTTTTTTTCCGAGGAAGCAA 360
consensus_1174#1      TAA-CAAAAACGAGTAATAATAATAAT-----AGTAATAATAATAATAATAATAACAACT 341
                       ** **    **   ***     *  *     *    * **  *  *    *  *     

consensus_1174#0      TCGATTTTATATCGA-TTACACGAACGAATATACGGTTC-CTTACGATTCGTAGAAAATA 418
consensus_1174#1      TCGATTGTTTGGCGAACTGCACTTCTAATCACCGACTTCTCTCCCGAANNNNNAAAAAAA 401
                      ****** * *  ***  * ***     *  *     *** **  ***       **** *

consensus_1174#0      TCGTCGTCGACGTGGTGATTTGTATATTTGGACATTTATATTCGGGAGAGAAGTCGGTGA 478
consensus_1174#1      AAAAA------------------------------------------------------- 406
                                                                                  

consensus_1174#0      TTAGAAGTGCAGTTCGCCAAACAATCGAAGTTGTTATTATTATTATTATTATTACTA 535
consensus_1174#1      ---------------------------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)