|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_118#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 854 fasta sequence
[TCGAATGTCTTCTCTTCGACTCGACTAAATGGAAATGATAAAATCGTAAAAGAATCAAGAATCACGGTCATTGTGAGTGACTTTAAGGATAGATAGATTCGATTTCGTTTGTGATACGCGAGTGATTCGCAAGTGTGATTCATAACTGCGCGATGTGTTACGATGAAATAGAATAGGTAGAATAATCAGATTGAGAAGAAGGGGTCGACTTGCTTTCAGACAAGATGAGAAGCGCGAACAGTTTGGACCAATATAACGACGATGACTTCTTCAGCGGTGGTCCCTGCCCTTCTTGTCGGTTAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAACGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGATCACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCGTACGCATTTGGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGT---CGACCAGCCGCAGCGAGATAGAGCGGGTAGAAGAAGAGGAAGAAGATAGAATGCTTATACCTGAAATGAAAACTTACTACGCGCCGATGGAATCTCTACTTTCGCCACGACAGCTTCAACGACGCAAGAGAGACCTGGATGGGGTACATTATCCAAAACAAGCAAATTCAAAGCGATTCTACAATGCGATTCTACAGAACGCTCTAGCTAACTGATACCATTTTTTTCTTCCTCCGCTTCTTATTCCTTCTTCGCCCTTTTTCCATTTTTTCCAAAAAAAAAAAAAAAAATTAAAAAAAAAAATAATAAAAAAAAAAAAAAAAAAA]
[+] EMBL BI504531 [TCGAATGTCTTCTCTTCGACTCGACTAAATGGAAATGATAAAATCGTAAAAGAATCAAGAATCACGGTCATTGTGAGTGACTTTAAGGATAGATAGATTCGATTTCGTTTGTGATACGCGAGTGATTCGCAAGTGTGATTCATAACTGCGCGATGTGTTACGATGAAATAGAATAGGTAGAATAATCAGATTGAGAAGAAGGGGTCGACTTGCTTTCAGACAAGATGAGAAGCGCGAACAGTTTGGACCAATATAACGACGATGACTTCTTCAGCGGTGGTCCCTGCCCTTCTTGTCGGTTAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAACGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGATCACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCGTACGCATTTGGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGT CGACCAGCCGCAGCGAGATAGAGCGGGTAGAAGAAGAGGAAGAAGATAGAATGCTTATACCTGAAATGAAAACTTACTACGCGCCGATGGAATCTCTACTTTCGCCACGACAGCT ]
[+] EMBL BI510086 [ GTTAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAACGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGATCACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCGTACGCATTTGGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGTCAGCGACCAGCCGCAGCGAGATAGAGCGGGTAGAAGAAGAGGAAGAAGATAGAATGCTTATACCTGAAATGAAAACTTACTACGCGCCGATGGAATCTCTACTTTCGCCACGACAGCTTCAACGACGCAAGAGAGACCTGGATGGGGTACATTATCCAAAACAAGCAAATTCAAAGCGATTCTACAATGCGATTCTACAGAACGCTCTAGCTAACTGATACCATTTTTTTCTTCCTCCGCTTCTTATTCCTTCTTCGCCCTTTTTCCATTTTTTCCAAAAAAAAAAAAAAAAATTAAAAAAAAAAATAATAAAAAAAAAAATAAAAAAA]
[+] EMBL BI508653 [ GTTAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAACGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGATCACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCGTACGCATTTTGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGT CGACCAGCCGCAGCGAGATAGAGCGGGTAGAAGAAGAGGAAGAAGATAGAATGCTTATACCTGAAATGAAAACTTACTACGCGCCGATGGAATCTCTACTTTCGCCACGACAGCTTCAACGACGCAAGAGAGACCTGGATGGGGTACATTATCCAAAACAAGCAAATTCAAAGCGATTCTACAATGCGATTCTACAGAACGCTCTAGCTAACTGATACCATTTTTTTCTTCCTCCGCTTCTTATTCCTTCTTCGCCCTTTTTCCATTTTTTCC AAAAAAAAAAAAAAATTAAAAAAAAAAATAATAAAAAAAAAAAA ]
[+] EMBL BI504813 [ GCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGATCACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCGTACGCATTTGGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGT CGACCAGCCGCAGCGAGATAGAGCGGGTAGAAGAAGAGGAAGAAGATAGAATGCTTATACCTGAAATGAAAACTTACTACGCGCCGATGGAATCTCTACTTTCGCCACGACAGCTTCAACGACGCAAGAGAGACCTGGATGGGGTACATTATCCAAAACAAGCAAATTCAAAGCGATTCTACAATGCGATTCTACAGAACGCTCTAGCTAACTGATACCATTTTTTTCTTCCTCCGCTTCTTATTCCTTCCTCGCCCTTTTTCCATTTTTTCCAAAAAAAAAAAAA ]
consensusID : consensus_118#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 813 fasta sequence
[TCCATCTCGGTTCGAATGTCTTCTCTTCGACTCGACTAAATGGAAATGATAAAATCGTAAAAGAATCAAGAATCACGGTCATTGTGAGTGACTTTAAGGATAGATAGATTCGATTTCGTTTGTGATACGCGAGTGATTCGCAAGTGTGATTCATAACTGCGCGATGTGTTACGATGAAATAGAATAGGTAGAATAATCAGATTGAGAAGAAGGGGTCGACTTGCTTTCAGACAAGATGAGAAGCGCGAACAGTTTGGACCAATATAACGACGATGACTTCTTCAGCGGTGGTCCCTGCCCTTCTTGTCGGTTAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAACGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGATCACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCGTACGCATTTGGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGTGTAAGTCTATTGCCAGATATACATAACGATGTGGTCATAAAATGAACTTGATATTAACGACGTCCGGTTCGTTGGTTGCTCGTAGAGATTTGAATAGCAGAATAAAGTGCGAGATACGTGGCGTGATTTATCGATTATTGTCAGAGAAAAATAATTCAAATAATCACTCGGAAGATGGTATAGCTAAAATTGTTCTTGAGACTTCTTGGTGTAAGTTGTTTCAAGTTTGACATTGCGGAAGAACGAGTTTTTTTAAATTTAATCGTTTTCCTGC]
[+] EMBL BI503412 [TCCATCTCGGTTCGAATGTCTTCTCTTCGACTCGACTAAATGGAAATGATAAAATCGTAAAAGAATCAAGAATCACGGTCATTGTGAGTGACTTTAAGGATAGATAGATTCGATTTCGTTTGTGATACGCGAGTGATTCGCAAGTGTGATTCATAACTGCGCGATGTGTTACGATGAAATAGAATAGGTAGAATAATCAGATTGAGAAGAAGGGGTCGACTTGCTTTCAGACAAGATGAGAAGCGCGAACAGTTTGGACCAATATAACGACGATGACTTCTTCAGCGGTGGTCCCTGCCCTTCTTGTCGGTTAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAACGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGATCACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCTTACGCATTTGGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGTGTAAGTCTATTGCCAGATATACATAACGATGTGGTCATAAAATGAACTTGATATTAACGACGTCCGGTTCGTTGGTTGCTCGTAGAGATTTGAATAGCAGAATAAAGTGCGAGATACGTGGC ]
[+] EMBL BI507398 [ CGAATGTCTTCTCTTCGACTCGACTAAATGGAAATGATAAAATCGTAAAAGAATCAAGAATCACGGTCATTGTGAGTGACTTTAAGGATAGATAGATTCGATTTCGTTTGTGATACGCGAGTGATTCGCAAGTGTGATTCATAACTGCGCGATGTGTTACGATGAAATAGAATAGGTAGAATAATCAGATTGAGAAGAAGGGGTCGACTTGCTTTCAGACAAGATGAGAAGCGCGAACAGTTTGGACCAATATAACGACGATGACTTCTTCAGCGGTGGTCCCTGCCCTTCTTGTCGGTTAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAACGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGATCACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCGTACGCATTTGGTTCACGCGACTAAAAGACA ]
[+] EMBL BI508380 [ TGGTCGACTCAAGTGGTGTATGGGCGGAAACGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGATCACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCGTACGCATTTGGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGTGTAAGTCTATTGCCAGATATACATAACGATGTGGTCATAAAATGAACTTGATATTAACGACGTCCGGTTCGTTGGTTGCTCGTAGAGATTTGAATAGCAGAATAAAGTGCGAGATACGTGGCGTGATTTATCGATTATTGTCAGAGAAAAATAATTCAAATAATCACTCGGAAGATGGTATAGCTAAAATTGTTCTTGAGACTTCTTGGTGTAAGTTGTTTCAAGTTTGACATTGCGGAAGAACGAGTTTTTTTAAATTTAATCGTTTTCCTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_118#0 -----------TCGAATGTCTTCTCTTCGACTCGACTAAATGGAAATGATAAAATCGTAA 49
consensus_118#1 TCCATCTCGGTTCGAATGTCTTCTCTTCGACTCGACTAAATGGAAATGATAAAATCGTAA 60
*************************************************
consensus_118#0 AAGAATCAAGAATCACGGTCATTGTGAGTGACTTTAAGGATAGATAGATTCGATTTCGTT 109
consensus_118#1 AAGAATCAAGAATCACGGTCATTGTGAGTGACTTTAAGGATAGATAGATTCGATTTCGTT 120
************************************************************
consensus_118#0 TGTGATACGCGAGTGATTCGCAAGTGTGATTCATAACTGCGCGATGTGTTACGATGAAAT 169
consensus_118#1 TGTGATACGCGAGTGATTCGCAAGTGTGATTCATAACTGCGCGATGTGTTACGATGAAAT 180
************************************************************
consensus_118#0 AGAATAGGTAGAATAATCAGATTGAGAAGAAGGGGTCGACTTGCTTTCAGACAAGATGAG 229
consensus_118#1 AGAATAGGTAGAATAATCAGATTGAGAAGAAGGGGTCGACTTGCTTTCAGACAAGATGAG 240
************************************************************
consensus_118#0 AAGCGCGAACAGTTTGGACCAATATAACGACGATGACTTCTTCAGCGGTGGTCCCTGCCC 289
consensus_118#1 AAGCGCGAACAGTTTGGACCAATATAACGACGATGACTTCTTCAGCGGTGGTCCCTGCCC 300
************************************************************
consensus_118#0 TTCTTGTCGGTTAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAA 349
consensus_118#1 TTCTTGTCGGTTAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAA 360
************************************************************
consensus_118#0 CGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGAT 409
consensus_118#1 CGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGAT 420
************************************************************
consensus_118#0 CACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCG 469
consensus_118#1 CACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCG 480
************************************************************
consensus_118#0 TACGCATTTGGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGTC 529
consensus_118#1 TACGCATTTGGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGT- 539
***********************************************************
consensus_118#0 GACCAGCCGCAGCGAGATAGAGCGGGTAGAAGAAGAGGAAGAAGATAGAATGCTTATACC 589
consensus_118#1 GTAAGTCTATTGCCAGATA-------TACATAACGATGTGGTC-ATAAAATGA----ACT 587
* * ** ***** ** * * ** * * *** **** **
consensus_118#0 TGAAATGAA-AACTTACTACGCGCCGATGGAATCTCTACTTTCGCCACGACAGCTTCAAC 648
consensus_118#1 TGATATTAACGACGTCCGGTTCGTTGGTTGCTCGTAGAGATTTGA-ATAGCAG----AAT 642
*** ** ** ** * * ** * * * * * ** * * *** **
consensus_118#0 GACGCAAGAGAGACCTGGATGGGGTACATTATCCAAAACAAGCAAATTCAAAGCGATTCT 708
consensus_118#1 AAAGTGCGAGATAC----GTGGCGTGATTTATCGATTATTGTCAGAGA-AAAATAATTCA 697
* * **** ** *** ** ***** * * ** * *** ****
consensus_118#0 ACAATGCGATTCTACAGAACGCTCTAGCTAACTGATACCATTTTTTTCTTCCTCCGCTTC 768
consensus_118#1 A--ATAATCACTCGGAAGATGGTATAGCTAA--------AATTGTTCTTGAGACTTCTTG 747
* ** * * * * ******* * ** ** * * ***
consensus_118#0 TTATTCCTTCTTCGCCCTTTTTCCATTTTTTCCAAAAAAAAAAAAAAAAATTAAAAAAAA 828
consensus_118#1 GTGTAAGTTGTTT-CAAGTTTGACATTGC-----GGAAGAACGAGTTTTTTTAAATTTAA 801
* * ** ** * *** **** ** ** * ***** **
consensus_118#0 AAATAATAAAAAAAAAAAAAAAAAAA 854
consensus_118#1 TCGTTTTCCTGC-------------- 813
* *
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |