cluster # 1191

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Apis mellifera
cluster # 1191 cluster # 1191 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1191#0 length = 615 sequences # 1

consensus_1191#1 length = 594 sequences # 1
consensus_1191#2 length = 290 sequences # 1

consensusID : consensus_1191#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 615
fasta sequence

                              [ATTTGAATTTCGCGTCCTCGATTATTTATATACATATCTACACGCATACACACACAGACACACACACACACGTTCGTGTACTTATTATACGAGAAGGGTATTTATCCTTGTATTTTCTTCTCAAAACTTCGTCTCGTACCTCATCTCGTCTAGCGAGCCACGGATTCTCCTCTCTCGTCGACTATGTGTGTTGGAACCCGTGCCGATTATTATTATTACTATTATTACTATTATTATTATTATTATTATTACTACTATTATTATTATTATTTATTTGTTTCTCTAACTAAGCGCGGCCCATTCCCCCTCCCTTTCCACTTTCTCACGATCGAATCCGACTAACCTAATTTATTCGAAATCGAAATTGTTTTGTCTCTATCCCCATTCTCTCCCTCCCTCTTACTTAGTTATTTAAGATATTCGAATTTTAATAAATATTTCCCTTCGGGATAACACACGGAGGATAGTATGTTTCGAGTATGTGCTTGAGCGCATGCGCGCCACACACACACACACACTACACAACTACCACACACGTACACGCATACATGCGATGATACACGACACGCGGATGAACACTGGCAACGTGCGTCGATCCACGACACGAATGGATGT]

[+] EMBL BI507478             [ATTTGAATTTCGCGTCCTCGATTATTTATATACATATCTACACGCATACACACACAGACACACACACACACGTTCGTGTACTTATTATACGAGAAGGGTATTTATCCTTGTATTTTCTTCTCAAAACTTCGTCTCGTACCTCATCTCGTCTAGCGAGCCACGGATTCTCCTCTCTCGTCGACTATGTGTGTTGGAACCCGTGCCGATTATTATTATTACTATTATTACTATTATTATTATTATTATTATTACTACTATTATTATTATTATTTATTTGTTTCTCTAACTAAGCGCGGCCCATTCCCCCTCCCTTTCCACTTTCTCACGATCGAATCCGACTAACCTAATTTATTCGAAATCGAAATTGTTTTGTCTCTATCCCCATTCTCTCCCTCCCTCTTACTTAGTTATTTAAGATATTCGAATTTTAATAAATATTTCCCTTCGGGATAACACACGGAGGATAGTATGTTTCGAGTATGTGCTTGAGCGCATGCGCGCCACACACACACACACACTACACAACTACCACACACGTACACGCATACATGCGATGATACACGACACGCGGATGAACACTGGCAACGTGCGTCGATCCACGACACGAATGGATGT]




>consensus_1191#0
ATTTGAATTTCGCGTCCTCGATTATTTATATACATATCTACACGCATACACACACAGACA
CACACACACACGTTCGTGTACTTATTATACGAGAAGGGTATTTATCCTTGTATTTTCTTC
TCAAAACTTCGTCTCGTACCTCATCTCGTCTAGCGAGCCACGGATTCTCCTCTCTCGTCG
ACTATGTGTGTTGGAACCCGTGCCGATTATTATTATTACTATTATTACTATTATTATTAT
TATTATTATTACTACTATTATTATTATTATTTATTTGTTTCTCTAACTAAGCGCGGCCCA
TTCCCCCTCCCTTTCCACTTTCTCACGATCGAATCCGACTAACCTAATTTATTCGAAATC
GAAATTGTTTTGTCTCTATCCCCATTCTCTCCCTCCCTCTTACTTAGTTATTTAAGATAT
TCGAATTTTAATAAATATTTCCCTTCGGGATAACACACGGAGGATAGTATGTTTCGAGTA
TGTGCTTGAGCGCATGCGCGCCACACACACACACACACTACACAACTACCACACACGTAC
ACGCATACATGCGATGATACACGACACGCGGATGAACACTGGCAACGTGCGTCGATCCAC
GACACGAATGGATGT

consensusID : consensus_1191#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 594
fasta sequence

                              [AGAAAAGTAAAAAAAAAAGATCTCGAGTGAAATTGAAATCCTTGGTATTCCATACTTTCGATAATACCTTTTCTACAGATAGATAGATTGAGATTTTTATGCACGTATATATTACATTTACGCGTATTTGTTTCCCGACGAGTTGTCGAGAGAGCGAAATTTCTAATTTTTCGTATCTTTTTATTTATTCTTTCACTCTTCATCGAATATACCGAGATTCCTTTTTACGTACGTATGGTATATATAGTTGGAAGAATGTAGTTTCTAGTACTTGAAGCTTTCCTAATTGCTTTTTCTATTTATTTATTTTTTATTAAGTTTCTCCATTAGACACAACTACCACACACGTACACGCATACATGCGATGATACACGACACGCGGATGAACACTGGCAACGTGCGTCGATCCACGACACGAATGGATGTAATTGGACGATGCGACCGCGATACGCGCATGCGCGTAAACGTATCGCCGACGTATCGTTGGCGACAAGGCGCGAGGAAAAGAAAAAGTTTTGTACACCGAGGCAACGATTTTGATTTTTACTTCATGATTCATATTTCAATTACATACTCGTTTTTATTTATATAAAA]

[+] EMBL BI507213             [AGAAAAGTAAAAAAAAAAGATCTCGAGTGAAATTGAAATCCTTGGTATTCCATACTTTCGATAATACCTTTTCTACAGATAGATAGATTGAGATTTTTATGCACGTATATATTACATTTACGCGTATTTGTTTCCCGACGAGTTGTCGAGAGAGCGAAATTTCTAATTTTTCGTATCTTTTTATTTATTCTTTCACTCTTCATCGAATATACCGAGATTCCTTTTTACGTACGTATGGTATATATAGTTGGAAGAATGTAGTTTCTAGTACTTGAAGCTTTCCTAATTGCTTTTTCTATTTATTTATTTTTTATTAAGTTTCTCCATTAGACACAACTACCACACACGTACACGCATACATGCGATGATACACGACACGCGGATGAACACTGGCAACGTGCGTCGATCCACGACACGAATGGATGTAATTGGACGATGCGACCGCGATACGCGCATGCGCGTAAACGTATCGCCGACGTATCGTTGGCGACAAGGCGCGAGGAAAAGAAAAAGTTTTGTACACCGAGGCAACGATTTTGATTTTTACTTCATGATTCATATTTCAATTACATACTCGTTTTTATTTATATAAAA]




>consensus_1191#1
AGAAAAGTAAAAAAAAAAGATCTCGAGTGAAATTGAAATCCTTGGTATTCCATACTTTCG
ATAATACCTTTTCTACAGATAGATAGATTGAGATTTTTATGCACGTATATATTACATTTA
CGCGTATTTGTTTCCCGACGAGTTGTCGAGAGAGCGAAATTTCTAATTTTTCGTATCTTT
TTATTTATTCTTTCACTCTTCATCGAATATACCGAGATTCCTTTTTACGTACGTATGGTA
TATATAGTTGGAAGAATGTAGTTTCTAGTACTTGAAGCTTTCCTAATTGCTTTTTCTATT
TATTTATTTTTTATTAAGTTTCTCCATTAGACACAACTACCACACACGTACACGCATACA
TGCGATGATACACGACACGCGGATGAACACTGGCAACGTGCGTCGATCCACGACACGAAT
GGATGTAATTGGACGATGCGACCGCGATACGCGCATGCGCGTAAACGTATCGCCGACGTA
TCGTTGGCGACAAGGCGCGAGGAAAAGAAAAAGTTTTGTACACCGAGGCAACGATTTTGA
TTTTTACTTCATGATTCATATTTCAATTACATACTCGTTTTTATTTATATAAAA

consensusID : consensus_1191#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 290
fasta sequence

                              [CTAGGATAATACAGATATTTTCCAATTGACGAAACAATGCAGTATATATGCGATGATGCACGACACGCGGATGAACACTGGCAACGTGCGTCGATCCACGACACGAATGGATGTAATTGGACGATGCGACCGCGATACGCGCATGCGCGTAAACGTATCGCCGACGTATCGTTGGCGACAAGGCGCGAGGAAAAGAAAAAGTTTTGTACACCGAGGCAACGATTTTGATTTTTACTTCATGATTCATATTTCAATTACATACTCGTTTTTATTTATATAAAAAAAAAAAA]

[+] EMBL BI509229             [CTAGGATAATACAGATATTTTCCAATTGACGAAACAATGCAGTATATATGCGATGATGCACGACACGCGGATGAACACTGGCAACGTGCGTCGATCCACGACACGAATGGATGTAATTGGACGATGCGACCGCGATACGCGCATGCGCGTAAACGTATCGCCGACGTATCGTTGGCGACAAGGCGCGAGGAAAAGAAAAAGTTTTGTACACCGAGGCAACGATTTTGATTTTTACTTCATGATTCATATTTCAATTACATACTCGTTTTTATTTATATAAAAAAAAAAAA]




>consensus_1191#2
CTAGGATAATACAGATATTTTCCAATTGACGAAACAATGCAGTATATATGCGATGATGCA
CGACACGCGGATGAACACTGGCAACGTGCGTCGATCCACGACACGAATGGATGTAATTGG
ACGATGCGACCGCGATACGCGCATGCGCGTAAACGTATCGCCGACGTATCGTTGGCGACA
AGGCGCGAGGAAAAGAAAAAGTTTTGTACACCGAGGCAACGATTTTGATTTTTACTTCAT
GATTCATATTTCAATTACATACTCGTTTTTATTTATATAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1191#1      ----------------------------------------AGAAAAGTAAAAAAAAAAGA 20
consensus_1191#2      ------------------------------------------------------------
consensus_1191#0      ATTTGAATTTCGCGTCCTCGATTATTTATATACATATCTACACGCATACACACACAGACA 60
                                                                                  

consensus_1191#1      TCTCGAGTGAAATTGAAATCCTTGGTATTCCATACTTTCGATAATACCTTTTCTACAGAT 80
consensus_1191#2      ------------------------------------------------------------
consensus_1191#0      CACACACACACGTTCGTGTACTTATTATACGAGAAGGGTATTTATCCTTGTATTTTCTTC 120
                                                                                  

consensus_1191#1      AGATAGATTGAGATTTTTATGCACGTATATATTACATTTACGCGTATTTGTTTCCCGACG 140
consensus_1191#2      ------------------------------------------------------------
consensus_1191#0      TCAAAACTTCGTCTCGTACCTCATCTCGTCTAGCGAGCCACGGATTCTCCTCTCTCGTCG 180
                                                                                  

consensus_1191#1      AGTTGTCGAGAGAGCGAAATTTCTAATTTTTCGTATCTTTTTATTTATTCTTTCACTCTT 200
consensus_1191#2      ------------------------------------------------------------
consensus_1191#0      ACTATGTGTGTTGGAACCCGTGCCGATTATTATTATTACTATTATTACTATTATTATTAT 240
                                                                                  

consensus_1191#1      CATCGAATATACCGAGATTCCTTTTTACGTACGTATGGTATATATAGTTGGAAGAATGTA 260
consensus_1191#2      ------------------------------------------------------------
consensus_1191#0      TATTATTATTACTACTATTATTATTATTATTTATTTGTTTCTCTAACTAAGCGCGGCCCA 300
                                                                                  

consensus_1191#1      GTTTCTAGTACTTGAAGCTTTCCTAATTGCTTTTTCTATTTATTTATTTTTTATTAAGTT 320
consensus_1191#2      ------------------------------------------CTAGGATAATACAGATAT 18
consensus_1191#0      TTCCCCCTCCCTTTCCACTTTCTCACGATCGAATCCGACTAACCTAATTTATTCGAAATC 360
                                                                      *  *    *   

consensus_1191#1      TC--TCCATTAGACACAACTACCACACACGTACACGCATACATGCGATGATACACGACAC 378
consensus_1191#2      TT--TCCAATTGACGAAACAA---------TGCA-GTATATATGCGATGATGCACGACAC 66
consensus_1191#0      GAAATTGTTTTGTCTCTATCCCCATTCTCTCCCTCCCTCTTACTTAGTTATTTAAGATAT 420
                          *    * * *   *              *        *     * **  * ** * 

consensus_1191#1      GCGGATGAACACTGGCAACGTGCGTCGATCCACGACACGAATGG--ATGTAATTGGACGA 436
consensus_1191#2      GCGGATGAACACTGGCAACGTGCGTCGATCCACGACACGAATGG--ATGTAATTGGACGA 124
consensus_1191#0      TCGAATTTTAATAAATATTTCCCTTCGGGATAACACACGGAGGATAGTATGTTTCGAGTA 480
                       ** **    *     *     * ***    *  ***** * *    * *  ** **  *

consensus_1191#1      TGCGACCGCG---ATACGCGC-ATGCGCGTAAACGTATCGCCGACGTATCGTTGGCGACA 492
consensus_1191#2      TGCGACCGCG---ATACGCGC-ATGCGCGTAAACGTATCGCCGACGTATCGTTGGCGACA 180
consensus_1191#0      TGTGCTTGAGCGCATGCGCGCCACACACACACACACACTACACAACTACCACACACGT-- 538
                      ** *   * *   ** ***** *  * *  * **  *   *  *  ** *     **   

consensus_1191#1      AGGCGCGAGGAAAAGAAAAAGTTTTGTACACCGAGGCAACGATTTTGATTTTTACTTCAT 552
consensus_1191#2      AGGCGCGAGGAAAAGAAAAAGTTTTGTACACCGAGGCAACGATTTTGATTTTTACTTCAT 240
consensus_1191#0      ACACGCATACATGCGATGATACACGACACGCGGATG-AACACTGGCAACGTGCGTC---- 593
                      *  ***    *   **  *        ** * ** * ***  *    *  *         

consensus_1191#1      GATTCATATTTCAATTACATACTCGTTTTTATTTATATAAAA-------- 594
consensus_1191#2      GATTCATATTTCAATTACATACTCGTTTTTATTTATATAAAAAAAAAAAA 290
consensus_1191#0      GATCCACGACACGAATGGATGT---------------------------- 615
                      *** **     * * *  **

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)