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Apis mellifera
cluster # 120 cluster # 120       Sequences # 7       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_120#0 length = 1295 sequences # 6  
 consensus_120#1 length = 407 sequences # 1  
consensusID : consensus_120#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1295
fasta sequence 
                              [GAAGAGTGTTACATATTACGCTAGATTTCTAATAAGTAAATATAGTACTCGTAGTACTACTAGTTCTACTACTACTAGTTCTACTACCAGTTTTACTCGCACTTCTAGTAGAATGTCATCAATTAAATCCATAAAAGCACGTCAAATTTTTGACTCTCGTGGTAATCCTACTGTAGAGGTTGATCTTGTCACGGATGATGGACTTTTTAGATCTGAGGTACCATCAGGTGCTTCTACTGGTATTCATGAAGCTTTAGAACTTAGAGATAATGATAAATCTAAATATCATGGAAAGTCTGTTTTTAAAGCTATAAGTAATATTAATAATACTATTGGACCAGAATTAATAAAGTCAAACTTGGATGTTACTTCACAATCTGATATTGATAATTTTCTTTTAAAACTTGATGGTACACCAAATAAATCAAATCTTGGTGCAAATGCAATTTTGGGTGTTTCCTTGGCAGTTTGTAAAGCAGGAGCAGC-AAAAAAAAAAAAACCATTATATAGATATATTGCAGATTTGGCAGGAAATACCAATATTATTTTACCAGTTCCAGCTTTTAATGTTATCAATGGTGGTTCACATGCTGGAAATAAATTAGCAATGCAAGAATTTATGATTTTACCTACAGGTGCTTCTAGTTTCTCAGATGCTATGAAAATGGGTACTGAAATTTATCACCATTTGAAAAATGGTATTAAATCAAGGTTTGGTCTTGATGCTACTTCTGTTGGTGATGAAGGTGGTTTTGCTCCAAATATTTTGGACAACAAAGAAGCTCTAAATTTGATCATAGATTCTATTAAAACTGCTGGATATGATGGAAAAGTCAAAATTGGTATGGATGTTGCTGCATCAGAATTTTACAAAAATGGAAAATATGATTTAAATTTTAAGAATGAAAAATCTGATCCAAGCACATATTTGGATTCAGACTCCTTAAAGAATTTATACCTACAATTTATTAAAGAATTCCCAATTGTTTCAATTGAAGATCCATTTGATCAAGATGATTGGAGTTCATGGACAACATTGACATCTTCTACTGATATTCAAATTGTGGGTGATGATGTTACTGTTACAAATCCTAATAGGATCAAAATGGCTATTGACAAGAAAGCTTGCAATTGTTTGTTATTGAAAGTCAACCAAATAGGTACTGTTACAGAATCAATCAACGCTCATAAACTTGCTAAGAGTGCTGGATGGGGCACAATGGTTTCTCATCGTTCAGGAGAAACAGAAGATACGTTTATTGCTGATTTAGTTGTTGGTTTATCGACTGGCCAAA]

[+] EMBL BI516785             [GAAGAGTGTTACATATTACGCTAGATTTCTAATAAGTAAATATAGTACTCGTAGTACTACTAGTTCTACTACTACTAGTTCTACTACCAGTTTTACTCGCACTTCTAGTAGAATGTCATCAATTAAATCCATAAAAGCACGTCAAATTTTTGACTCTCGTGGTAATCCTACTGTAGAGGTTGATCTTGTCACGGATGATGGACTTTTTAGATCTGAGGTACCATCAGGTGCTTCTACTGGTATTCATGAAGCTTTAGAACTTAGAGATAATGATAAATCTAAATATCATGGAAAGTCTGTTTTTAAAGCTATAAGTAATATTAATAATACTATTGGACCAGAATTAATAAAGTCAAACTTGGATGTTACTTCACAATCTGATATTGATAATTTTCTTTTAAAACTTGATGGTACACCAAATAAATCAAATCTTGGTGCAAATGCAATTTTGGGTNNNTCCTTGGCAGTTTGTAAAGCAGGAGCAGC AAAAAAAAAAAAACCATTATATAGATATATTGCAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BI504440             [                                                                                                         TAGTAGAATGTCATCAATTAAATCCATAAAAGCACGTCAAATTTTTGACTCTCGTGGTAATCCTACTGTAGAGGTTGATCTTGTCACGGATGATGGACTTTTTAGATCTGAGGTACCATCAGGTGCTTCTACTGGTATTCATGAAGCTTTAGAACTTAGAGATAATGATAAATCTAAATATCATGGAAAGTCTGTTTTTAAAGCTATAAGTAATATTAATAATACTATTGGACCAGAATTAATAAAGTCAAACTTGGATGTTACTTCACAATCTGATATTGATAATTTTCTTTTAAAACTTGATGGTACACCAAATAAATCAAATCTTGGTGCAAATGCAATTTTGGGTGTTTCCTTGGCAGTTTGTAAAGCAGGAGCAGC AAAAAAAAAAAAACCATTATATAGATATATTGCAGATTTGGCAGGAAATACCAATATTATTTTACCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BI504877             [                                                                                                                                                               TGGTAATCCTACTGTAGAGGTTGATCTTGTCACGGATGATGGACTTTTTAGATCTGAGTTACCATCAGGTGCTTCTACTGGTATTCATGAAGCTTTAGAACTTAGAGATAATGATAAATCTAAATATCATGGAAAGTCTGTTTTTAAAGCTATAAGTAATATTAATAATACTATTGGACCAGAATTAATAAAGTCAAACTTGGATGTTACTTCACAATCTGATATTGATAATTTTCTTTTAAAACTTGATGGTACACCAAATAAATCAAATCTTGGTGCAAATGCAATTTTGGGTGTTTCCTTGGCAGTTTGTAAAGCAGGAGCAGCAAAAAAAAAAAAAACCATTATATAGATATATTGCAGATTTGGCAGGAAATACCAATATTATTTTACCAGTTCCAGCTTTTAATGTTATCAATGGTGGTTCACATGCTGGAAATAAATTAGCAATGCAAGAATTTATGATTTTACCTACAGGTGCTTCTAGTTTCTCAGATGCTATGAAAATGGGTACTGAAATTTATCACCATTTGAAAAATGGTATTAAATCAAGGTTTGGTCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BI511389             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TATTTTACCAGTTCCAGCTTTTAATGTTATCAATGGTGGTTCACATGCTGGAAATAAATTAGCAATGCAAGAATTTATGATTTTACCTACAGGTGCTTCTAGTTTCTCAGATGCTATGAAAATGGGTACTGAAATTTATCACCATTTGAAAAATGGTATTAAATCAAGGTTTGGTCTTGATGCTACTTCTGTTGGTGATGAAGGTGGTTTTGCTCCAAATATTTTGGACAACAAAGAAGCTCTAAATTTGATCATAGATTCTATTAAAACTGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BI504105             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGTATTAAATCAAGGTTTGGTCTTGATGCTACTTCTGTTGGTGATGAAGGTGGTTTTGCTCCAAATATTTTGGACAACAAAGAAGCTCTAAATTTGATCATAGATTCTATTAAAACTGCTGGATATGATGGAAAAGTCAAAATTGGTATGGATGTTGCTGCATCAGAATTTTACAAAAATGGAAAATATGATTTAAATTTTAAGAATGAAAAATCTGATCCAAGCACATATTTGGATTCAGACTCCTTAAAGAATTTATACCTACAATTTATTAAAGAATTCCCAATTGTTTCAATTGAAGATCCATTTGATCAAGATGATTGGAGTTCATGGACAACATTGACATCTTCTACTGATATTCAAATTGTGGGTGATGATGTTACTGTTACAAATCCTAATAGGATCAAAATGGCTATTGACAAGAAAGCTTGCAATTGTTTGTTATTGAAAGTCAACCAAATAGGTACTGTTACAGAATCAATCAACGCTCATAAACTTGCTAAGAGTGCTGGATGGGGCACAATGGTTTCTCATCGTTCAGGAGAAACAGAAGATACGTTTATTGCTGATTTAGTTGTTGGTTTATCGACTGGCCAAA]
[+] EMBL BI513161             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGTATTAAATCAAGGTTTGGTCTTGATGCTACTTCTGTTGGTGATGAAGGTGGTTTTGCTCCAAATATTTTGGACAACAAAGAAGCTCTAAATTTGATCATAGATTCTATTAAAACTGCTGGATATGATGGAAAAGTCAAAATTGGTATGGATGTTGCTGCATCAGAATTTTACAAAAATGGAAAATATGATTTAAATTTTAAGAATGAAAAATCTGATCCAAGCACATATTTGGATTCAGACTCCTTAAAGAATTTATACCTACAATTTATTAAAGAATTCCCAATTGTTTCAATTGAAGATCCATTTGATCAAGATGATTGGAGTTCATGGACAACATTGACATCTTCTACTGATATTCAAATTGTGGGTGATGATGTTACTGTTACAAATCCTAATAGGATCAAAATGGCTATTGACAAGAAAGCTTGCAATTGTTTGTTATTGAAAGTCAACCAAATAGGTACTGTTACAGAATCAATCAACG                                                                                                               ]




>consensus_120#0
GAAGAGTGTTACATATTACGCTAGATTTCTAATAAGTAAATATAGTACTCGTAGTACTAC
TAGTTCTACTACTACTAGTTCTACTACCAGTTTTACTCGCACTTCTAGTAGAATGTCATC
AATTAAATCCATAAAAGCACGTCAAATTTTTGACTCTCGTGGTAATCCTACTGTAGAGGT
TGATCTTGTCACGGATGATGGACTTTTTAGATCTGAGGTACCATCAGGTGCTTCTACTGG
TATTCATGAAGCTTTAGAACTTAGAGATAATGATAAATCTAAATATCATGGAAAGTCTGT
TTTTAAAGCTATAAGTAATATTAATAATACTATTGGACCAGAATTAATAAAGTCAAACTT
GGATGTTACTTCACAATCTGATATTGATAATTTTCTTTTAAAACTTGATGGTACACCAAA
TAAATCAAATCTTGGTGCAAATGCAATTTTGGGTGTTTCCTTGGCAGTTTGTAAAGCAGG
AGCAGCAAAAAAAAAAAAACCATTATATAGATATATTGCAGATTTGGCAGGAAATACCAA
TATTATTTTACCAGTTCCAGCTTTTAATGTTATCAATGGTGGTTCACATGCTGGAAATAA
ATTAGCAATGCAAGAATTTATGATTTTACCTACAGGTGCTTCTAGTTTCTCAGATGCTAT
GAAAATGGGTACTGAAATTTATCACCATTTGAAAAATGGTATTAAATCAAGGTTTGGTCT
TGATGCTACTTCTGTTGGTGATGAAGGTGGTTTTGCTCCAAATATTTTGGACAACAAAGA
AGCTCTAAATTTGATCATAGATTCTATTAAAACTGCTGGATATGATGGAAAAGTCAAAAT
TGGTATGGATGTTGCTGCATCAGAATTTTACAAAAATGGAAAATATGATTTAAATTTTAA
GAATGAAAAATCTGATCCAAGCACATATTTGGATTCAGACTCCTTAAAGAATTTATACCT
ACAATTTATTAAAGAATTCCCAATTGTTTCAATTGAAGATCCATTTGATCAAGATGATTG
GAGTTCATGGACAACATTGACATCTTCTACTGATATTCAAATTGTGGGTGATGATGTTAC
TGTTACAAATCCTAATAGGATCAAAATGGCTATTGACAAGAAAGCTTGCAATTGTTTGTT
ATTGAAAGTCAACCAAATAGGTACTGTTACAGAATCAATCAACGCTCATAAACTTGCTAA
GAGTGCTGGATGGGGCACAATGGTTTCTCATCGTTCAGGAGAAACAGAAGATACGTTTAT
TGCTGATTTAGTTGTTGGTTTATCGACTGGCCAAA

consensusID : consensus_120#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 407
fasta sequence 
                              [TTTTTTTATTTTTCATATTTCTTTTAACAGAAATACTTTAATTTCATCATCTCTCTATTTCTATAATTGAAAAACTTTTTTTCTTTTGAATATAATAACAGTAATGGTTTTCAAAATTATTTCATCAATACAATGTTAATAATTATAAAAGTATATATTCAACTGATTTTGCAGTAAATATAACAACTAAAACTTCATTAATAAAAAGATATAATATATCTTAAGCCTGAGGATTACGGAATTTATTTCCTGCATATTTGGCAGACGAACCTAATTCTTCTTCAATACGAAGAATTTGATTGTACTTTGCTAAACGTTCTGAACGGCAAGGCGCACCCGTTTTAATTTGGCCAGTCGATAAACCAACAACTAAATCAGCAATAAACGTATCTTCTGTTTCTCCTGAA]

[+] EMBL BI510965             [TTTTTTTATTTTTCATATTTCTTTTAACAGAAATACTTTAATTTCATCATCTCTCTATTTCTATAATTGAAAAACTTTTTTTCTTTTGAATATAATAACAGTAATGGTTTTCAAAATTATTTCATCAATACAATGTTAATAATTATAAAAGTATATATTCAACTGATTTTGCAGTAAATATAACAACTAAAACTTCATTAATAAAAAGATATAATATATCTTAAGCCTGAGGATTACGGAATTTATTTCCTGCATATTTGGCAGACGAACCTAATTCTTCTTCAATACGAAGAATTTGATTGTACTTTGCTAAACGTTCTGAACGGCAAGGCGCACCCGTTTTAATTTGGCCAGTCGATAAACCAACAACTAAATCAGCAATAAACGTATCTTCTGTTTCTCCTGAA]




>consensus_120#1
TTTTTTTATTTTTCATATTTCTTTTAACAGAAATACTTTAATTTCATCATCTCTCTATTT
CTATAATTGAAAAACTTTTTTTCTTTTGAATATAATAACAGTAATGGTTTTCAAAATTAT
TTCATCAATACAATGTTAATAATTATAAAAGTATATATTCAACTGATTTTGCAGTAAATA
TAACAACTAAAACTTCATTAATAAAAAGATATAATATATCTTAAGCCTGAGGATTACGGA
ATTTATTTCCTGCATATTTGGCAGACGAACCTAATTCTTCTTCAATACGAAGAATTTGAT
TGTACTTTGCTAAACGTTCTGAACGGCAAGGCGCACCCGTTTTAATTTGGCCAGTCGATA
AACCAACAACTAAATCAGCAATAAACGTATCTTCTGTTTCTCCTGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_120#0      GAAGAGTGTTACATATTACGCTAGATTTCTAATAAGTAAATATAGTACTCGTAGTACTAC 60
consensus_120#1      ------------------------------------------------------------
                                                                                 

consensus_120#0      TAGTTCTACTACTACTAGTTCTACTACCAGTTTTACTCGCACTTCTAGTAGAATGTCATC 120
consensus_120#1      ------------------------------------------------------------
                                                                                 

consensus_120#0      AATTAAATCCATAAAAGCACGTCAAATTTTTGACTCTCGTGGTAATCCTACTGTAGAGGT 180
consensus_120#1      ------------------------------------------------------------
                                                                                 

consensus_120#0      TGATCTTGTCACGGATGATGGACTTTTTAGATCTGAGGTACCATCAGGTGCTTCTACTGG 240
consensus_120#1      ------------------------------------------------------------
                                                                                 

consensus_120#0      TATTCATGAAGCTTTAGAACTTAGAGATAATGATAAATCTAAATATCATGGAAAGTCTGT 300
consensus_120#1      ------------------------------------------------------------
                                                                                 

consensus_120#0      TTTTAAAGCTATAAGTAATATTAATAATACTATTGGACCAGAATTAATAAAGTCAAACTT 360
consensus_120#1      ------------------------------------------------------------
                                                                                 

consensus_120#0      GGATGTTACTTCACAATCTGATATTGATAATTTTCTTTTAAAACTTGATGGTACACCAAA 420
consensus_120#1      ------------------------------------------------------------
                                                                                 

consensus_120#0      TAAATCAAATCTTGGTGCAAATGCAATTTTGGGTGTTTCCTTGGCAGTTTGTAAAGCAGG 480
consensus_120#1      ------------------------------------------------------------
                                                                                 

consensus_120#0      AGCAGCAAAAAAAAAAAAACCATTATATAGATATATTGCAGATTTGGCAGGAAATACCAA 540
consensus_120#1      ------------------------------------------------------------
                                                                                 

consensus_120#0      TATTATTTTACCAGTTCCAGCTTTTAATGTTATCAATGGTGGTTCACATGCTGGAAATAA 600
consensus_120#1      ------------------------------------------------------------
                                                                                 

consensus_120#0      ATTAGCAATGCAAGAATTTATGATTTTACCTACAGGTGCTTCTAGTTTCTCAGATGCTAT 660
consensus_120#1      ------------------------------------------------------------
                                                                                 

consensus_120#0      GAAAATGGGTACTGAAATTTATCACCATTTGAAAAATGGTATTAAATCAAGGTTTGGTCT 720
consensus_120#1      ---------TTTTTTTATTTTTCATATTTCTTTTAACAGAAATACTTTAA--TTTCATCA 49
                              *  *   **** ***   **     **  * * **  * **  ***  ** 

consensus_120#0      TGATGCTACTTCTGTTGGTGATGAAGGTGGTTTTGCTCCAAATATTTTGGACAACAAAGA 780
consensus_120#1      TCTCTCTATTTCTATAATTGA-AAAACTTTTTTTCTTTTGAATATAATA-ACAGTAATGG 107
                     *    *** **** *   ***  **  *  ****  *   *****  *  ***  ** * 

consensus_120#0      AGCTCTAAATTTGATCATAGATTC--TATTAAAACTGCTGGATATGATGGAAAAGTCAAA 838
consensus_120#1      TTTTCAAAATTATTTCATCAATACAATGTTAATAATTATAAAAGTATATATTCAACTGAT 167
                        ** *****   ****  ** *  * **** * *  *  *  *        *    * 

consensus_120#0      ATTGGTATGGATGTTGCTGCATCAGAAT--TTTACAAAAATGGAAAATATGATTTAAATT 896
consensus_120#1      TTTGCAGTAAATATAACAACTAAAACTTCATTAATAAAAAGATATAATATATCTTAAGCC 227
                      ***   *  ** *  *  *   *   *  ** * *****   * *****   ****   

consensus_120#0      TTAAGAATGAAAAATCTGATCCAAGCACATATTTGGATTCAGACTCCTTAAAGAATTTAT 956
consensus_120#1      TGAGGATTACGGAATTTATTTCCTGCATAT-TTGGCAGACGAACCTAATTCTTCTTCAAT 286
                     * * ** *    *** *  * *  *** ** ** * *  *  **    *      *  **

consensus_120#0      ACCTACAATTTATTAAAGAATTCCCAATTGTTTCAATTG--AAGATCCATTTGATCAAGA 1014
consensus_120#1      ACGAAGAATTTGATTGTACTTTGCTAAACGTTCTGAACGGCAAGGCGCACCCGTTTTAAT 346
                     **  * *****  *      ** * **  ***   *  *  ***   **   * *  *  

consensus_120#0      TGATTGGAGTTCATGGAC-AACATTGACATCTTCTACTGATATTCAAATTGTGGGTGATG 1073
consensus_120#1      TTGGCC-AGTCGATAAACCAACAACTAAATCAGCAATAAACGTATCTTCTGTTTCTCCTG 405
                     *      ***  **  ** ****   * ***  * *   *  *      ***   *  **

consensus_120#0      ATGTTACTGTTACAAATCCTAATAGGATCAAAATGGCTATTGACAAGAAAGCTTGCAATT 1133
consensus_120#1      AA---------------------------------------------------------- 407
                     *                                                           

consensus_120#0      GTTTGTTATTGAAAGTCAACCAAATAGGTACTGTTACAGAATCAATCAACGCTCATAAAC 1193
consensus_120#1      ------------------------------------------------------------
                                                                                 

consensus_120#0      TTGCTAAGAGTGCTGGATGGGGCACAATGGTTTCTCATCGTTCAGGAGAAACAGAAGATA 1253
consensus_120#1      ------------------------------------------------------------
                                                                                 

consensus_120#0      CGTTTATTGCTGATTTAGTTGTTGGTTTATCGACTGGCCAAA 1295
consensus_120#1      ------------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)