cluster # 1207

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Apis mellifera
cluster # 1207 cluster # 1207 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1207#0 length = 645 sequences # 1

consensus_1207#1 length = 549 sequences # 1
consensus_1207#2 length = 430 sequences # 1

consensusID : consensus_1207#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 645
fasta sequence

                              [CTAATTCTATGTCGATGATATGTCGGCTTCAAACAATATTAAAATAATGCAAGCATACAGATTGGCCTATCTGGCCGTCTGACAAATATGAATTTATGGAATAATTTTATAACTTTAATAATCGATCATGGTCAAGGAAAAACCAAATTCAATCCGTATTTACGATTCAGAAGGTTATAGACGTAGAGCTGCATGTATCTGCGTTAAAAACGATCTTGAAGATGAGGTACTTTTGGTTACATCCAGTCGTAGACCTGATAGTTGGATAGTACCTGGTGGAGGTGTTGAACCGGAGGAAGAACCTGCAGTAACAGCATTGCGAGAAGTTCGAGAAGAGGCTGGTGTTTTAGGACAATTAGGCAGATGTCTTGGTATATTTGAGAATGTGGAACACAAACATAGAACACAAGTATGGGTTATGAGAGTAACCGAAGAATTGCCAGAATGGGAAGATTCACGCACTATTGGTCGAAAACGAAAATGGTTCTCTATTCCAGAAGCCTTGCTTCAGCTTGCTCAGCACAAGCCCGTCCAACGTTCTTATATACACAGCCTCCACAATACTAATCCTCGACATAATCCTAATATTTCACCATCTCACCATTCACATACCACTGTAACATCTATTCAATTAATGAATAATTC]

[+] EMBL BI506619             [CTAATTCTATGTCGATGATATGTCGGCTTCAAACAATATTAAAATAATGCAAGCATACAGATTGGCCTATCTGGCCGTCTGACAAATATGAATTTATGGAATAATTTTATAACTTTAATAATCGATCATGGTCAAGGAAAAACCAAATTCAATCCGTATTTACGATTCAGAAGGTTATAGACGTAGAGCTGCATGTATCTGCGTTAAAAACGATCTTGAAGATGAGGTACTTTTGGTTACATCCAGTCGTAGACCTGATAGTTGGATAGTACCTGGTGGAGGTGTTGAACCGGAGGAAGAACCTGCAGTAACAGCATTGCGAGAAGTTCGAGAAGAGGCTGGTGTTTTAGGACAATTAGGCAGATGTCTTGGTATATTTGAGAATGTGGAACACAAACATAGAACACAAGTATGGGTTATGAGAGTAACCGAAGAATTGCCAGAATGGGAAGATTCACGCACTATTGGTCGAAAACGAAAATGGTTCTCTATTCCAGAAGCCTTGCTTCAGCTTGCTCAGCACAAGCCCGTCCAACGTTCTTATATACACAGCCTCCACAATACTAATCCTCGACATAATCCTAATATTTCACCATCTCACCATTCACATACCACTGTAACATCTATTCAATTAATGAATAATTC]




>consensus_1207#0
CTAATTCTATGTCGATGATATGTCGGCTTCAAACAATATTAAAATAATGCAAGCATACAG
ATTGGCCTATCTGGCCGTCTGACAAATATGAATTTATGGAATAATTTTATAACTTTAATA
ATCGATCATGGTCAAGGAAAAACCAAATTCAATCCGTATTTACGATTCAGAAGGTTATAG
ACGTAGAGCTGCATGTATCTGCGTTAAAAACGATCTTGAAGATGAGGTACTTTTGGTTAC
ATCCAGTCGTAGACCTGATAGTTGGATAGTACCTGGTGGAGGTGTTGAACCGGAGGAAGA
ACCTGCAGTAACAGCATTGCGAGAAGTTCGAGAAGAGGCTGGTGTTTTAGGACAATTAGG
CAGATGTCTTGGTATATTTGAGAATGTGGAACACAAACATAGAACACAAGTATGGGTTAT
GAGAGTAACCGAAGAATTGCCAGAATGGGAAGATTCACGCACTATTGGTCGAAAACGAAA
ATGGTTCTCTATTCCAGAAGCCTTGCTTCAGCTTGCTCAGCACAAGCCCGTCCAACGTTC
TTATATACACAGCCTCCACAATACTAATCCTCGACATAATCCTAATATTTCACCATCTCA
CCATTCACATACCACTGTAACATCTATTCAATTAATGAATAATTC

consensusID : consensus_1207#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 549
fasta sequence

                              [TCCACAATACTAATCCTCGACATAATCCTAATATTTCACCATCTCACCATTCACATACCACTGTAACATCTATTCAATTAATGAATAATTCTAGTAACAATCCTCATTTAAACAAACATAGCTAATATTAAATACCATCCATTTGCGTGAACAATTGCTATTGTGTTAGATATTTGTTACTGCTCCTTTTCTTTCATATAGTTATAACAATTAAAAAAGTTATATTTTATATTTAAAATGTACATTCTCTTTTTCTTATTTTTCTTTCCATTCTTTAATCTTTTTTATTTATAGTAAAAAAGAAAAGAAAACTCGAAAAAGAAAATGAACCAAAATCGAAGCGGAACACCGTATTTGTCCAGCTATATTGTTGATATCGCGATTTTCCAATATCGTTGATGGTATTACACAGTGAACTGCACTTGGGCGGGGAACGATACATTCGATACTGTGGGACTATTGCACACCTCTTCGCTGTATCATAGGCTAACCACACGGATGTTATCAGGAATAAATTGGAAATTAGATAATACCACGTTGCGTAATATA]

[+] EMBL BI506270             [TCCACAATACTAATCCTCGACATAATCCTAATATTTCACCATCTCACCATTCACATACCACTGTAACATCTATTCAATTAATGAATAATTCTAGTAACAATCCTCATTTAAACAAACATAGCTAATATTAAATACCATCCATTTGCGTGAACAATTGCTATTGTGTTAGATATTTGTTACTGCTCCTTTTCTTTCATATAGTTATAACAATTAAAAAAGTTATATTTTATATTTAAAATGTACATTCTCTTTTTCTTATTTTTCTTTCCATTCTTTAATCTTTTTTATTTATAGTAAAAAAGAAAAGAAAACTCGAAAAAGAAAATGAACCAAAATCGAAGCGGAACACCGTATTTGTCCAGCTATATTGTTGATATCGCGATTTTCCAATATCGTTGATGGTATTACACAGTGAACTGCACTTGGGCGGGGAACGATACATTCGATACTGTGGGACTATTGCACACCTCTTCGCTGTATCATAGGCTAACCACACGGATGTTATCAGGAATAAATTGGAAATTAGATAATACCACGTTGCGTAATATA]




>consensus_1207#1
TCCACAATACTAATCCTCGACATAATCCTAATATTTCACCATCTCACCATTCACATACCA
CTGTAACATCTATTCAATTAATGAATAATTCTAGTAACAATCCTCATTTAAACAAACATA
GCTAATATTAAATACCATCCATTTGCGTGAACAATTGCTATTGTGTTAGATATTTGTTAC
TGCTCCTTTTCTTTCATATAGTTATAACAATTAAAAAAGTTATATTTTATATTTAAAATG
TACATTCTCTTTTTCTTATTTTTCTTTCCATTCTTTAATCTTTTTTATTTATAGTAAAAA
AGAAAAGAAAACTCGAAAAAGAAAATGAACCAAAATCGAAGCGGAACACCGTATTTGTCC
AGCTATATTGTTGATATCGCGATTTTCCAATATCGTTGATGGTATTACACAGTGAACTGC
ACTTGGGCGGGGAACGATACATTCGATACTGTGGGACTATTGCACACCTCTTCGCTGTAT
CATAGGCTAACCACACGGATGTTATCAGGAATAAATTGGAAATTAGATAATACCACGTTG
CGTAATATA

consensusID : consensus_1207#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 430
fasta sequence

                              [GAGACAGAGAGAGAGTTTGAGAAGAAGAATTCGAAGAAAATTTCAATTCGAAGAAAACTTTCGACGATTCTTTATATATAGCGAAATTAGTAGGTCAGTTAGGATCGAAGCATTGATGATTCCGCTTGTCTCTTGACGTAGTAAAATTAACAGGAGAAAAAAAAAAAAGAAAAAGAAAAGAAAAGAAAACTCGAAAAAGAAAATGAACCAAAATCGAAGCGGAACACCGTATTTGTAACAGCTATATTGTTGATATCGCGATTTTCCAATATCGTTGATGGTATTACACAGTGAACCGCACTTGGGCGGGGAACGATACATTCGATACTNNGGGACTATTGCACACCTCTTCGCTGTATCATAGGCTAACCACACGGATGTTATCAGGAATAAATTGGAAATTAGATAATACCACGTTGCGTAATATACT]

[+] EMBL BI516455             [GAGACAGAGAGAGAGTTTGAGAAGAAGAATTCGAAGAAAATTTCAATTCGAAGAAAACTTTCGACGATTCTTTATATATAGCGAAATTAGTAGGTCAGTTAGGATCGAAGCATTGATGATTCCGCTTGTCTCTTGACGTAGTAAAATTAACAGGAGAAAAAAAAAAAAGAAAAAGAAAAGAAAAGAAAACTCGAAAAAGAAAATGAACCAAAATCGAAGCGGAACACCGTATTTGTAACAGCTATATTGTTGATATCGCGATTTTCCAATATCGTTGATGGTATTACACAGTGAACCGCACTTGGGCGGGGAACGATACATTCGATACTNNGGGACTATTGCACACCTCTTCGCTGTATCATAGGCTAACCACACGGATGTTATCAGGAATAAATTGGAAATTAGATAATACCACGTTGCGTAATATACT]




>consensus_1207#2
GAGACAGAGAGAGAGTTTGAGAAGAAGAATTCGAAGAAAATTTCAATTCGAAGAAAACTT
TCGACGATTCTTTATATATAGCGAAATTAGTAGGTCAGTTAGGATCGAAGCATTGATGAT
TCCGCTTGTCTCTTGACGTAGTAAAATTAACAGGAGAAAAAAAAAAAAGAAAAAGAAAAG
AAAAGAAAACTCGAAAAAGAAAATGAACCAAAATCGAAGCGGAACACCGTATTTGTAACA
GCTATATTGTTGATATCGCGATTTTCCAATATCGTTGATGGTATTACACAGTGAACCGCA
CTTGGGCGGGGAACGATACATTCGATACTNNGGGACTATTGCACACCTCTTCGCTGTATC
ATAGGCTAACCACACGGATGTTATCAGGAATAAATTGGAAATTAGATAATACCACGTTGC
GTAATATACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1207#1      -------------------------------------------------------TCCAC 5
consensus_1207#2      ------------------------------------------------------------
consensus_1207#0      CTAATTCTATGTCGATGATATGTCGGCTTCAAACAATATTAAAATAATGCAAGCATACAG 60
                                                                                  

consensus_1207#1      AATACTAATCCTCGACATAATCCTAATATTTCACCATCTCACCATTCACATACCACTGTA 65
consensus_1207#2      ------------------------------------------------------------
consensus_1207#0      ATTGGCCTATCTGGCCGTCTGACAAATATGAATTTATGGAATAATTT---TATAACTTTA 117
                                                                                  

consensus_1207#1      ACATCTATTCAATTAATGAATAATTCTAGTAACAATCCTCATTTA-AACAAACATAGCTA 124
consensus_1207#2      ------------------------------------------------GAGACAGAGAGA 12
consensus_1207#0      ATAATCGATCATGGTCAAGGAAAAACCAAATTCAATCCGTATTTACGATTCAGAAGGTTA 177
                                                                         * *  *  *

consensus_1207#1      ---ATATTAAATACCATCCATTTGCGTGAACAATTGCTATTGTGTT-AGATATTTGTTAC 180
consensus_1207#2      ---GAGTTTGAGAAGAAGAATT--CGAAGAAAATTTCAATT-CGAA-GAAAACTTTCGAC 65
consensus_1207#0      TAGACGTAGAGCTGCATGTATCTGCGTTAAAAACGATCTTGAAGATGAGGTACTTTTGGT 237
                            *        *   **   **   * **      *   *       * **     

consensus_1207#1      TGCTCCTTTTCTTTCATATAGTTATAACAATTAAAAAAGTTATATTTTATATTTAAAATG 240
consensus_1207#2      GATTCTTTAT-----ATATAGCGA-AATTAGTAGGTCAGTTAGGATCGAAGCAT----TG 115
consensus_1207#0      TACATCCAGTCGTAGACCTGATAGTTG-GATAGTACCTGGTGGAGGTGTTGAACCGGAGG 296
                               *     *  *          *        * *                  *

consensus_1207#1      TACATTCTCTTTTTCTTATTTTTCTTTCCATTCTTTAATCTTTTTTATTTATAGTAAAA- 299
consensus_1207#2      ATGATTCCGCTTGTCTCTTGACGTAGTAAAATTAACAGGAGAAAAAAAAAAAAGAAAAAG 175
consensus_1207#0      AAGAACCTGCAGTAACAGCATTGCGAGAAGTTCGAGAAGAGGCTGGTGTTTTAGGACAAT 356
                         *  *                        *    *               ** * ** 

consensus_1207#1      --AAGAAA------AGAAAACTCGAAAA---AGAAAATGAACCAAAATCGAAGCGGAACA 348
consensus_1207#2      AAAAGAAA------AGAAAACTCGAAAA---AGAAAATGAACCAAAATCGAAGCGGAACA 226
consensus_1207#0      TAGGCAGATGTCTTGGTATATTTGAGAATGTGGAACACAAACATAGAACACAAGTATGGG 416
                           * *       * * * * ** **    *** *  ***  * * *  *        

consensus_1207#1      CCGTATTTGTC-CAGCTATATTGTTGATATCGCGATTTTCCAATATCGTTGATGGTATTA 407
consensus_1207#2      CCGTATTTGTAACAGCTATATTGTTGATATCGCGATTTTCCAATATCGTTGATGGTATTA 286
consensus_1207#0      TTATGAGAGTAACCGAAGAATTGCCAGAATGGGAAGATTCACGCACTATTGGTCGAAAAC 476
                         *    **  * *    ****     ** *  *  ***    *   *** * * *   

consensus_1207#1      CACAGTGAACTGCACTTGGGCGGGGAACGATACATTCGATACTGTGGGACTATTGCACAC 467
consensus_1207#2      CACAGTGAACCGCACTTGGGCGGGGAACGATACATTCGATACTNNGGGACTATTGCACAC 346
consensus_1207#0      GAAAATGGTTCTCTATT---CCAGAAGCCTTGCTTCAGCTTGCTCAGCACAAGCCCGTCC 533
                       * * **     *  **   *  * * *  * * *  * *      * ** *   *   *

consensus_1207#1      CTCTTCGCTGTAT-CATAGGCTAACCACACGGATGTTATCAGGAATAAATTGGAAATTAG 526
consensus_1207#2      CTCTTCGCTGTAT-CATAGGCTAACCACACGGATGTTATCAGGAATAAATTGGAAATTAG 405
consensus_1207#0      AACGTTCTTATATACACAGCCT--CCACAATACTAATCCTCGACATAATCCTAATATTTC 591
                        * *   * *** ** ** **  *****    *  *    *  ****     * ***  

consensus_1207#1      ATAATACCACGTTGCGTAATATA------------------------------- 549
consensus_1207#2      ATAATACCACGTTGCGTAATATACT----------------------------- 430
consensus_1207#0      ACCATCTCACCATTCACATACCACTGTAACATCTATTCAATTAATGAATAATTC 645
                      *  **  ***  * *  *    *

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)