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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_121#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 694 fasta sequence
[TAACGATGGTTTAATTAATGTTTTTATTTAGATCACTATTTATATATCAAAGAATTATATTTTCCTTCCCACTTTCTCTTTATTACAATAAAATCATTTGTTTTATTATGTTAATTTTGCTAAAATAAATTAAACGAATGCGCAAACCGAGGACATTGAACAATAATCCTTGGATTCCTAAGCGCACGTGAAGCAGCTGCCTTCCTATTTAGCGAGCATAGTAGTAGACTGTCTCACGCAACTCCGGTGGAAGAACGAGCCAACGAGAAAAGTATATACACAGGCACACACATTCGCGCATCGCTGAGTGTTAAAAATATTATTTTAGATATATTAAAATGATAGCAATTAACCATATGTCTATGAGAGATACAACAAAAGCATAGCATCGATGCGTTAATAATAATATAAATATC--TATATATATATATATATATAAATATATATGTTCATGTGTGTATGTGTGTGTGTGTGTGTGTAATATATGAACAATATATATACATAGATATATATATACATATGCATATACATGTACACCTATCAAATTAACTATACATTATGTACCTATAGCATATAGTCGTTAAATGAGAAGAAGAAAAAAAAAACATTGACACGTCGCGTAAT-AAAAAAAAAAAAAAATTTGACTTGATACGGATTCACAGATGTTGATGAAGAAAACATGTTGTTGTCTCTAGA]
[-] EMBL BI504143 [TAACGATGGTTTAATTAATGTTTTTATTTAGATCACTATTTATATATCAAAGAATTATATTTTCCTTCCCACTTTCTCTTTATTACAATAAAATCATTTGTTTTATTATGTTAATTTTGCTAAAATAAATTAAACGAATGCGCAAACCGAGGACATTGAACAATAATCCTTGGATTNNNAAGCGCACGTGAAGCAGCTGCCTTNNNATTTAGCGAGCATAGTAGTAGACTGTCTCACGCAACTCCGGTGGAAGAACGAGCCAACGAGAAAAGTATATACACAGGCACACACATTCGCGCATCGCTGAGTGTTAAAAATATTATTTTAGATATATTAAAATGATAGCAATTAACCATATGTCTATGAGAGATACAACAAAAGCATAGCATCGATGCGTTAATAATAATATAAATATC TATATATATATATATATAAATATATATGTTCATGTGTGTATGTGTGTGTGTGTGTGTGTAATATATGAACAATATATATACATAGATATATATATACATATGCATATACATGTACACCTATCAAATTAACTATACATTATGTACCTATAGCATATAGTCGTT ]
[-] EMBL BI514667 [ CATTTGTTTTATTATGTTAATTTTGCTAAAATAAATTAAACGAATGCGCAAACCGAGGACATTGAACAATAATCCTTGGATTCCTAAGCGCACGTGAAGCAGCTGCCTTCCTATTTAGCGAGCATAGTAGTAGACTGTCTCACGCAACTCCGGTGGAAGAACGAGCCAACGAGAAAAGTATATACACAGGCACACACATTCGCGCATCGCTGAGTGTTAAAAATATTATTTTAGATATATTAAAATGATAGCAATTAACCATATGTCTATGAGAGATACAACAAAAGCATAGCATCGATGCGTTAATAATAATATAAATATCTATATATATATATATATATATAAATATATATGTTCATGTGTGTATGTGTGTGTGTGTGTGTGTAATATATGAACAATATATATACATAGATATATATATACATATGCATATACATGTACACCTATCAAATTAACTATACATTATGTACCTATAGCATATAGTCGTTAAATGAGAAGAAGAAAAAAAAAACATTGACACGTCGC ]
[+] EMBL BI507345 [ TTTTTTATTATGTTAATTTTGCTAAAATAAATTAAACGAATGCGCAAACCGAGGACATTGAACAATAATCCTTGGATTCCTAAGCGCACGTGAAGCAGCTGCCTTCCTATTTAGCGAGCATAGTAGTAGACTGTCTCACGCAACTCCGGTGGAAGAACGAGCCAACGAGAAAAGTATATACACAGGCACACACATTCGCGCATCGCTGAGTGTTAAAAATATTATTTTAGATATATTAAAATGATAGCAATTAACCATATGTCTATGAGAGATACAACAAAAGCATAGCATCGATGCGTTAATAATAATATAAATATC TATATATATATATATATATAAATATATATGTTCATGTGTGTATGTGTGTGTGTGTGTGTGTAATATATGAACAATATATATACATAGATATATATATACATATGCATATACATGTACACCTATCAAATTAACTATACATTATGTACCTATAGCATATAGTCGTTAAATGAAAAAAAa ]
[-] EMBL BI505144 [ GTAGTAGACTGTCTCACGCAACTCCGGTGGAAGAACGAGCCAACGAGAAAAGTATATACACAGGCACACACATTCGCGCATCGCTGAGTGTTAAAAATATTATTTTAGATATATTAAAATGATAGCAATTANNCATATGTCTATGAGAGATACAACAAAAGCATAGCATCGATGCGTTAATAATAATATAAATATC TATATATATATATATATATAAATATATATGTTCATGTGTGTATGTGTGTGTGTGTGTGTGTAATATATGACNAATATATATACATAGATATATATATACATATGCATATACATGTACACCTATCAAATTAACTATACATTATGTACCTATAGCATATAGTCGTTAAATGAGAAGAAGAAAAAAAAAACATTGACACGTCGCGTAAT AAAAAAAAAAAAAAATTTGACTTGATACGGATTCACAGATGTTGATGAAGAAAACATGTTGTTGTCTCTAGA]
[-] EMBL BI509363 [ AAAAGTATATACACAGGCACACACATTCGCGCATCGCTGAGTGTTAAAAATATTATTTTAGATATATTAAAATGATAGCAATTNNNCATATGTCTATGAGAGATACAACAAAAGCATAGCATCGATGCGTTAATAATAATATAAATATC TATATATATATATATATATAAATATATATGTTCATGTGTGTATGTGTGTGTGTGTGTGTGTAATATATGACCAATATATATACATAGATATATATATACATATGCATATACATGTACACCTATCAAATTAACTATACATTATGTACCTATAGCATATAGTCGTTAAATGAGAAGAAGAAAAAAAAAACATTGACACGTCGCGTAATAAAAAAAAAAAAAAAATTTGACTTGATACGGATTCACAGATGTTGATGAAGAAAA ]
consensusID : consensus_121#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence
[GTAGGTATATTATACATTAAAGACTCGATACTTAACACTTGATGAACACTTTAATGATACATGTACACACGTACACACACGTATATAATATATATATAATATAATACGTACATATATTACAGAGAAACGCAATATAAATACGAATACATACACGACAAAAGATTACATAATAACACATACACACACACACATACGTACAGAAACACGCCACCAGGTGGATACACTATGTATGGTCATTAATTTATTCTGACCGTAGTGCTAATTGTACTTAGCATTTACGTAGATGACACTAATTGCCTAGGTCGACCAGCTCGTCCGGGGTTCCTGTTGCCGTGCGCCGTGTTACACCCTCTCCTCCTCTGACACAACTCCTCTCCCTCCTTCCATCCACCGCGTTCGTTTCCTTCCCGCGGCGAGGAAGCCATGATGATATCGCCGTCGCGGTATAAATTTCCTAGCGCGTGGTGCCGCCGAACGGCAAGGGCGAGAACCCTGGTCGATCAAATTTCGCCTAATAATGAAAACGACAAAAGGAAAAAAA]
[+] EMBL BI507849 [GTAGGTATATTATACATTAAAGACTCGATACTTAACACTTGATGAACACTTTAATGATACATGTACACACGTACACACACGTATATAATATATATATAATATAATACGTACATATATTACAGAGAAACGCAATATAAATACGAATACATACACGACAAAAGATTACATAATAACACATACACACACACACATACGTACAGAAACACGCCACCAGGTGGATACACTATGTATGGTCATTAATTTATTCTGACCGTAGTGCTAATTGTACTTAGCATTTACGTAGATGACACTAATTGCCTAGGTCGACCAGCTCGTCCGGGGTTCCTGTTGCCGTGCGCCGTGTTACACCCTCTCCTCCTCTGACACAACTCCTCTCCCTCCTTCCATCCACCGCGTTCGTTTCCTTCCCGCGGCGAGGAAGCCATGATGATATCGCCGTCGCGGTATAAATTTCCTAGCGCGTGGTGCCGCCGAACGGCAAGGGCGAGAACCCTGGTCGATCAAATTTCGCCTAATAATGAAAACGACAAAAGGAAAAAAA]
consensusID : consensus_121#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence
[TCTCGCCCTTGCCGTTCGGCGGCACCACGCGCTAGGAAATTTATACCGCGACGGCGATATCATCATGGCTTCCTACCGCGGGAAGGAAACGAACGCGGTGGAAGGAAGGAAGGAGGGAGAGGAGTTGTGTCAGAGGAGGAGAGGGTGTAACACGGCGCACGGCAACAGGAACCCCGGACGAGCTGGTCGACCTAGGCAATTAGTGTCATCTACGTAAATGCTAAGTACAATTAGCACTACGGTCAGAATAAATTAATGACCATACATAGTGTATCCACCTGGTGGCGTGTTTCATGTGTGTATGTGTGTGTGTGTGTGTGTAATATATGAACAATATATATACATAGATATATATATACATATGCATATACATGTACACCTATCAAATTAACTATACATTATGTACCTATAGCATATAGTCGTTAAATGAGAAGAAGAAAAAAAAAACATTGACACGTCGCGTAATAAAAAAAA]
[+] EMBL BI516623 [TCTCGCCCTTGCCGTTCGGCGGCACCACGCGCTAGGAAATTTATACCGCGACGGCGATATCATCATGGCTTCCTACCGCGGGAAGGAAACGAACGCGGTGGAAGGAAGGAAGGAGGGAGAGGAGTTGTGTCAGAGGAGGAGAGGGTGTAACACGGCGCACGGCAACAGGAACCCCGGACGAGCTGGTCGACCTAGGCAATTAGTGTCATCTACGTAAATGCTAAGTACAATTAGCACTACGGTCAGAATAAATTAATGACCATACATAGTGTATCCACCTGGTGGCGTGTTTCATGTGTGTATGTGTGTGTGTGTGTGTGTAATATATGAACAATATATATACATAGATATATATATACATATGCATATACATGTACACCTATCAAATTAACTATACATTATGTACCTATAGCATATAGTCGTTAAATGAGAAGAAGAAAAAAAAAACATTGACACGTCGCGTAATAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_121#0 TAACGATGGTTTAATTAATGTTTTTATTTAGATCACTATTTATATATCAAAGAATTATAT 60
consensus_121#2 ------------------------------------------------------------
consensus_121#1 ------------------------------------------------------------
consensus_121#0 TTTCCTTCCCACTTTCTCTTTATTACAATAAAATCATTTGTTTTATTATGTTAATTTTGC 120
consensus_121#2 ------------------------------------------------------------
consensus_121#1 -------------------------------------------------------GTAGG 5
consensus_121#0 TAAAATAAATTAAACGAATGCGCAAACCGAGGACATTGAACAATAATCCTTGGATTCCTA 180
consensus_121#2 -----------TCTCGCCCTTGCCGTTCGGCGGCACCACGCGCTA------GGAAATTTA 43
consensus_121#1 TATATTATACATTAAAGACTCGATACTTAACA--CTTGATGAACACTTTAATGATACATG 63
* * ** *
consensus_121#0 AGCGCACGTGAAGCAGCTGCCTTCCTATTTAGCGAGCATAGTAGTAGACTGTCTCAC--- 237
consensus_121#2 TAC---CGCGACGGCGATATCATCATGGCTTCCTACCGCGGGAAGGAAACG--------- 91
consensus_121#1 TACACACGTACACACACGTATATAATATATATATAATATAATACGTACATATATTACAGA 123
* ** * * * * *
consensus_121#0 GCAACTCCGGTGGAAGAACGAGCCA-ACGAGAAAAGTATATACACAGGCACACACATTCG 296
consensus_121#2 --AACGCGGTGGAAGGAAGGAAGGA-GGGAGAGGAGTTGTGTCAGAGGAGGAGAGG---G 145
consensus_121#1 GAAACGCAATATAAATACGAATACATACACGACAAAAGATTACATAATAACACATACACA 183
*** * * * * * ** * ** * * *
consensus_121#0 CGCATCGCTGAGTGTTAAAAATATTATTTTAGATATATTAA--AATGATAGCAATTAACC 354
consensus_121#2 TGTAACACGGCGCACGGCAACAGGAACCCCGGACGAGCTGGTCGACCTAGGCAATTAGTG 205
consensus_121#1 CACACACATACGTACAGAAACACGC-CACCAGGTGGATACACTATGTATGGTCATTAATT 242
* * ** * * ****
consensus_121#0 ATATGTCTATG-AGAGATACAACAAAAGCATAGCATCGATGCGTTAATAATAATATAAAT 413
consensus_121#2 TCATCTACGTA-AATGCTA-AGTACAAT--TAGCAC---TACGGTCAGAATAA-ATTAAT 257
consensus_121#1 TATTCTGACCGTAGTGCTA-ATTGTACT--TAGCATT--TACGTAGATGACAC--TAATT 295
* * * * ** * * ***** * ** * * * * * *
consensus_121#0 ATCTATATATA-TATATATATATAAATATATATGTTCATGTGTGTATGTGTGTGTGTGTG 472
consensus_121#2 GACCATACATAGTGTATCCACCTGGTGGCGTGT-TTCATGTGTGTATGTGTGTGTGTGTG 316
consensus_121#1 GCCTAGGTCGACCAGCTCGTCCGGGGTTCCTGTTGCCGTGCGC-CGTGTTACACCCTCTC 354
* * * * * * * ** * *** * *
consensus_121#0 TGTGTAATATATGAACAATATATATACATAGATATAT-ATATACATATGCATAT----AC 527
consensus_121#2 TGTGTAATATATGAACAATATATATACATAGATATAT-ATATACATATGCATAT----AC 371
consensus_121#1 CTCCTCTGACACAACTCCTCTCCCTCCTTCCATCCACCGCGTTCGTTTCCTTCCCGCGGC 414
* * * * * * * * * ** * * * * * * * *
consensus_121#0 ATGTACACCT--ATCAAATTAACTATACATTATGTA---CCTATAGCATATAGTCGTTAA 582
consensus_121#2 ATGTACACCT--ATCAAATTAACTATACATTATGTA---CCTATAGCATATAGTCGTTAA 426
consensus_121#1 GAGGAAGCCATGATGATATCGCCGTCGCGGTATAAATTTCCTAGCGCGTGGTGCCGCCGA 474
* * ** ** * ** * * *** * **** ** * * ** *
consensus_121#0 ATGAGAAGAAGAAAAAAA--AAACATTGACACGTCGCGTAATAAAAAAAAAAAAAAATTT 640
consensus_121#2 ATGAGAAGAAGAAAAAAA--AAACATTGACACGTCGCGTAATAAAAAAAA---------- 474
consensus_121#1 ACGGCAAGGGCGAGAACCCTGGTCGATCAAATTTCGCCTAATAATGAAAACGACAAAAGG 534
* * *** * ** * * * * **** ****** ****
consensus_121#0 GACTTGATACGGATTCACAGATGTTGATGAAGAAAACATGTTGTTGTCTCTAGA 694
consensus_121#2 ------------------------------------------------------
consensus_121#1 AAAAAAA----------------------------------------------- 541
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |