|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1225#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1009 fasta sequence
[AATTCAGTGCTCCTATTTCATGTATTTCCAGTTTCTTCGATTTTGCACGCATGATTGAACATGTTCTAGCCAAAGATCTTAAACAGGAACATGTATATGGAGTTAATGGCATTTGCAGAACAACTAGCAATGCATATATCCATTGACCCAATTCATATTCTATCTTTTCCAGTGTTTCAATGTGTTCCACTAAATATTCTAATATTTGTTCTACTTCTGGATGATTTAAACAAAAAATGATATCCAATGTTGGAGCAATTCTTGTTTTTTCCTTATCATTACTTGAACAAAATTTGATCCAACCTTTTTCATCATCAATACTTGGCATATCAATCTTTGGACGTTTCCATTTACGTTTTAATGATTGAATTTCGTTTTTCAATTGACTTATATATAATCTGATATTTGAAAAGTCTGATACTTGATACAACTGCCAATCAAGCGAAGGGCCAAGCCATGGTGGTGCCTCCATACAGCCTGATAACTTATAACGTTGCGTTTACATAATTATTATATATGTTGTTTACATTCTAACAAGTTAGAATTCTAATTTCTTGTATAAACGATTGTAAAACATCGTTTGCAAACTTACAGGTTCGACATCAATTGTAGGTTTCCCAAAATGTTTCCGATCAATGTCGGCTACTACAATATCAGCACATTTCTGTGCTTCTATTACTACTCTTTTAATGTATTCTTCTCCGGAAGTTGGAGGCAAAGACAGGTTAAGATCCTCATCAATTTCTCCAACAACGAAAGCAGGTTTTGCTAAATAATCTGTCATTTTTCTTAGTATTTTTAAATAATTATTAAATATTATTTATTTCAATCTATAAATAGGTTATATTATTTCTTTCAGATGAAGTTATTTATGGTCACCCCCTCTATGTAAATTTAGTACAAAGTTTTTCTTTTCATATTCCTATGATGCAAAGTATTAATTACGAAAAAAATATTCAAAAAAGATATATTGAATTTATGCATCTGAATAAAATAAATAATAAAGTAA]
[-] EMBL BI506926 [AATTCAGTGCTCCTATTTCATGTATTTCCAGTTTCTTCGATTTTGCACGCATGATTGAACATGTTCTAGCCAAAGATCTTAAACAGGAACATGTATATGGAGTTAATGGCATTTGCAGAACAACTAGCAATGCATATATCCATTGACCCAATTCATATTCTATCTTTTCCAGTGTTTCAATGTGTTCCACTAAATATTCTAATATTTGTTCTACTTCTGGATGATTTAAACAAAAAATGATATCCAATGTTGGAGCAATTCTTGTTTTTTCCTTATCATTACTTGAACAAAATTTGATCCAACCTTTTTCATCATCAATACTTGGCATATCAATCTTTGGACGTTTCCATTTACGTTTTAATGATTGAATTTCGTTTTTCAATTGACTTATATATAATCTGATATTTGAAAAGTCTGATACTTGATACAACTGCCAATCAAGCGAAGGGCCAAGCCATGGTGGTGCCTCCATACAGCCTGATAACTTATAACGTTGCGTTTACATAATTATTATATATGTTGTTTACATTCTAACAAGTTAGAATTCTAATTTCTTGTATAAACGATTGTAAAACATCGTT ]
[+] EMBL BI506673 [ ATTGACTTATATATAATCTGATATTTGAAAAGTCTGATACTTGATACAACTGCCAATCAAGCGAAGGGCCAAGCCATGGTGGTGCCTCCATACAGCCTGATAACTTATAACGTTGCGTTTACATAATTATTATATATGTTGTTTACATTCTAACAAGTTAGAATTCTAATTTCTTGTATAAACGATTGTAAAACATCGTTTGCAAACTTACAGGTTCGACATCAATTGTAGGTTTCCCAAAATGTTTCCGATCAATGTCGGCTACTACAATATCAGCACATTTCTGTGCTTCTATTACTACTCTTTTAATGTATTCTTCTCCGGAAGTTGGAGGCAAAGACAGGTTAAGATCCTCATCAATTTCTCCAACAACGAAAGCAGGTTTTGCTAAATAATCTGTCATTTTTCTTAGTATTTTTAAATAATTATTAAATATTATTTATTTCAATCTATAAATAGGTTATATTATTTCTTTCAGATGAAGTTATTTATGGTCACCCCCTCTATGTAAATTTAGTACAAAGTTTTTCTTTTCATATTCCTATGATGCAAAGTATTAATTACGAAAAAAATATTCAAAAAAGATATATTGAATTTATGCATCTGAATAAAATAAATAATAAAGTAA]
consensusID : consensus_1225#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence
[TTTTTTTTTGGCTTTTCTAATATTCTTTATTACCGATTTTGCACGCATGATTGAACATGTTCTAGCCAAAGATCTTAAACAGGAACATGTATCTGGAGTTAATGGCATTTGCAGAACAACTAGCAATGCATATATCCATTGACCCAATTCATATTCTATCTTTTCCAGTGTTTCAATGTGTTCCACTAAATATTCTAATATTTGTTCTACTTCTGGATGATTTAAACAAAAAATGATATCCAATGTTGGAGCAATTCTTGTTTTTTCCTTATCATTACTTGAACAAAATTTGATCCAACCTTTTTCATCATCAATACTTGGCATATCAATCTTTGGACGTTTCCATTTACGTTTTAATGATTGAATTTCGTTTTTCAATTGACTTATATATAATCTGATATTTGAAAAGTCTGATACTTGATACAACTG]
[+] EMBL BI511841 [TTTTTTTTTGGCTTTTCTAATATTCTTTATTACCGATTTTGCACGCATGATTGAACATGTTCTAGCCAAAGATCTTAAACAGGAACATGTATCTGGAGTTAATGGCATTTGCAGAACAACTAGCAATGCATATATCCATTGACCCAATTCATATTCTATCTTTTCCAGTGTTTCAATGTGTTCCACTAAATATTCTAATATTTGTTCTACTTCTGGATGATTTAAACAAAAAATGATATCCAATGTTGGAGCAATTCTTGTTTTTTCCTTATCATTACTTGAACAAAATTTGATCCAACCTTTTTCATCATCAATACTTGGCATATCAATCTTTGGACGTTTCCATTTACGTTTTAATGATTGAATTTCGTTTTTCAATTGACTTATATATAATCTGATATTTGAAAAGTCTGATACTTGATACAACTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1225#0 AATTCAGTGCTCCTATTTCATGTATTTCCAGTTTCTTCGATTTTGCACGCATGATTGAAC 60
consensus_1225#1 --TTTTTTTTTGGCTTTTCTAATATTCTTTATTAC--CGATTTTGCACGCATGATTGAAC 56
** * * **** **** ** * ***********************
consensus_1225#0 ATGTTCTAGCCAAAGATCTTAAACAGGAACATGTATATGGAGTTAATGGCATTTGCAGAA 120
consensus_1225#1 ATGTTCTAGCCAAAGATCTTAAACAGGAACATGTATCTGGAGTTAATGGCATTTGCAGAA 116
************************************ ***********************
consensus_1225#0 CAACTAGCAATGCATATATCCATTGACCCAATTCATATTCTATCTTTTCCAGTGTTTCAA 180
consensus_1225#1 CAACTAGCAATGCATATATCCATTGACCCAATTCATATTCTATCTTTTCCAGTGTTTCAA 176
************************************************************
consensus_1225#0 TGTGTTCCACTAAATATTCTAATATTTGTTCTACTTCTGGATGATTTAAACAAAAAATGA 240
consensus_1225#1 TGTGTTCCACTAAATATTCTAATATTTGTTCTACTTCTGGATGATTTAAACAAAAAATGA 236
************************************************************
consensus_1225#0 TATCCAATGTTGGAGCAATTCTTGTTTTTTCCTTATCATTACTTGAACAAAATTTGATCC 300
consensus_1225#1 TATCCAATGTTGGAGCAATTCTTGTTTTTTCCTTATCATTACTTGAACAAAATTTGATCC 296
************************************************************
consensus_1225#0 AACCTTTTTCATCATCAATACTTGGCATATCAATCTTTGGACGTTTCCATTTACGTTTTA 360
consensus_1225#1 AACCTTTTTCATCATCAATACTTGGCATATCAATCTTTGGACGTTTCCATTTACGTTTTA 356
************************************************************
consensus_1225#0 ATGATTGAATTTCGTTTTTCAATTGACTTATATATAATCTGATATTTGAAAAGTCTGATA 420
consensus_1225#1 ATGATTGAATTTCGTTTTTCAATTGACTTATATATAATCTGATATTTGAAAAGTCTGATA 416
************************************************************
consensus_1225#0 CTTGATACAACTGCCAATCAAGCGAAGGGCCAAGCCATGGTGGTGCCTCCATACAGCCTG 480
consensus_1225#1 CTTGATACAACTG----------------------------------------------- 429
*************
consensus_1225#0 ATAACTTATAACGTTGCGTTTACATAATTATTATATATGTTGTTTACATTCTAACAAGTT 540
consensus_1225#1 ------------------------------------------------------------
consensus_1225#0 AGAATTCTAATTTCTTGTATAAACGATTGTAAAACATCGTTTGCAAACTTACAGGTTCGA 600
consensus_1225#1 ------------------------------------------------------------
consensus_1225#0 CATCAATTGTAGGTTTCCCAAAATGTTTCCGATCAATGTCGGCTACTACAATATCAGCAC 660
consensus_1225#1 ------------------------------------------------------------
consensus_1225#0 ATTTCTGTGCTTCTATTACTACTCTTTTAATGTATTCTTCTCCGGAAGTTGGAGGCAAAG 720
consensus_1225#1 ------------------------------------------------------------
consensus_1225#0 ACAGGTTAAGATCCTCATCAATTTCTCCAACAACGAAAGCAGGTTTTGCTAAATAATCTG 780
consensus_1225#1 ------------------------------------------------------------
consensus_1225#0 TCATTTTTCTTAGTATTTTTAAATAATTATTAAATATTATTTATTTCAATCTATAAATAG 840
consensus_1225#1 ------------------------------------------------------------
consensus_1225#0 GTTATATTATTTCTTTCAGATGAAGTTATTTATGGTCACCCCCTCTATGTAAATTTAGTA 900
consensus_1225#1 ------------------------------------------------------------
consensus_1225#0 CAAAGTTTTTCTTTTCATATTCCTATGATGCAAAGTATTAATTACGAAAAAAATATTCAA 960
consensus_1225#1 ------------------------------------------------------------
consensus_1225#0 AAAAGATATATTGAATTTATGCATCTGAATAAAATAAATAATAAAGTAA 1009
consensus_1225#1 -------------------------------------------------
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |