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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1231#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence
[TTATGATTCTCGTGGGGGTGGGTATAGGGGCCCAGGAGGAGTCAGCGCAAAAAATTAAGGCCCCAGGGCTCTTTTTTCCTCTCATTCTTTCTTTTTTTTTCCCTCACACTCGCATGTAATATAATCTTAATACCTCTCTTATCGCTCTCTGATTCTGTAATAATAATTTTCTTTGGTTTGTTCTCTGTGTACATACTCATCTCGTTGAGCTGGCTCCGCGAATGGGGGATTTATCCTGTGCGTACCTTCATCGACAAGGAAGGACATTCGATTATCAACCCGCCCATCGTTTTACGGAATTCCTGTTGGAAAAAATTTTCTCGTGAAAGTTTTCGTTGGCGTCATCCACCATCATCATTCTCTCTCTTCCTCTCTCTCTCTCTTTCTCTCTCTTTCATGCAACAATTCAACTCACAACTTTGCATAAACTGATCTAGAAAGAAAATTCTGTAAAACGAGGGGGAACGGAATAAAGCCACTTTTACTCGATACAACGATCTCTTTCTAGAACAAGATGTATCTACGNNGTGTCTACGAGTATATAATATACGAGTATAGAAACGATATAATTACGAAATCAATCAAGNCTTTTCTTTTTTTAATCGAGATAAGA]
[+] EMBL BI513276 [TTATGATTCTCGTGGGGGTGGGTATAGGGGCCCAGGAGGAGTCAGCGCAAAAAATTAAGGCCCCAGGGCTCTTTTTTCCTCTCATTCTTTCTTTTTTTTTCCCTCACACTCGCATGTAATATAATCTTAATACCTCTCTTATCGCTCTCTGATTCTGTAATAATAATTTTCTTTGGTTTGTTCTCTGTGTACATACTCATCTCGTTGAGCTGGCTCCGCGAATGGGGGATTTATCCTGTGCGTACCTTCATCGACAAGGAAGGACATTCGATTATCAACCCGCCCATCGTTTTACGGAATTCCTGTTGGAAAAAATTTTCTCGTGAAAGTTTTCGTTGGCGTCATCCACCATCATCATTCTCTCTCTTCCTCTCTCTCTCTCTTTCTCTCTCTTTCATGCAACAATTCAACTCACAACTTTGCATAAACTGATCTAGAAAGAAAATTCTGTAAAACGAGGGGGAACGGAATAAAGCCACTTTTACTCGATACAACGATCTCTTTCTAGAACAAGATGTATCTACGNNGTGTCTACGAGTATATAATATACGAGTATAGAAACGATATAATTACGAAATCAATCAAGNCTTTTCTTTTTTTAATCGAGATAAGA]
consensusID : consensus_1231#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 476 fasta sequence
[CTTTTTTTTTCCCTCACACTCGCATGTAATATATAATCTTAATACCTCTCTTATCGCTCTCTGATTCTGTAATAATAATNNTCTTTGNNTTGTTCTCTGTGTACATACTCATCTCGTTGAGCTGGCTCCGCGAATGGGGGATTTATCCTGTGCGTACCTTCATCGACAAGGAAGGACATTCGATTATCAACCCGCCCATCGTTTTACGGAATTCCAGGTGGCGACCCCCACTAAAGAGCAGTGGTGCGCAGGTGGGGACAGCGCTGTAGCGACAGGCCCCGGGGCCCCAGCTCCTAAATGGCGTTCAATGCGCGCGGGTCTTGCTGCTGGCGACGCCTAGATGCGCTCCCGTAATCGACGCCACTGACGTACGATTCCTCCTCGTTGCCGTAGTCGTGTTCACCACGATCGCCCCGATCACGATCCATCCTCTCCAGCCTCGACTTCCGGCTCCCCTCGCTCACGTGTCCACCGCT]
[+] EMBL BI511846 [CTTTTTTTTTCCCTCACACTCGCATGTA ATATAATCTTAATACCTCTCTTATCGCTCTCTGATTCTGTAATAATAATNNTCTTTGNNTTGTTCTCTGTGTACATACTCATCTCGTTGAGCTGGCTCCGCGAATGGGGGATTTATCCTGTGCGTACCTTCATCGACAAGGAAG ]
[+] EMBL BI517257 [ CGCATGTAATATATAATCTTAATACCTCTCTTATCGCTCTCTGATTCTGTAATAATAATTTTCTTTGGTTTGTTCTCTGTGTACATACTCATCTCGTTGAGCTGGCTCCGCGAATGGGGGATTTATCCTGTGCGTACCTTCATCGACAAGGAAGGACATTCGATTATCAACCCGCCCATCGTTTTACGGAATTCCAGGTGGCGACCCCCACTAAAGAGCAGTGGTGCGCAGGTGGGGACAGCGCTGTAGCGACAGGCCCCGGGGCCCCAGCTCCTAAATGGCGTTCAATGCGCGCGGGTCTTGCTGCTGGCGACGCCTAGATGCGCTCCCGTAATCGACGCCACTGACGTACGATTCCTCCTCGTTGCCGTAGTCGTGTTCACCACGATCGCCCCGATCACGATCCATCCTCTCCAGCCTCGACTTCCGGCTCCCCTCGCTCACGTGTCCACCGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1231#0 TTATGATTCTCGTGGGGGTGGGTATAGGGGCCCAGGAGGAGTCAGCGCAAAAAATTAAGG 60
consensus_1231#1 ------------------------------------------------------------
consensus_1231#0 CCCCAGGGCTCTTTTTTCCTCTCATTCTTTCTTTTTTTTTCCCTCACACTCGCATGTAAT 120
consensus_1231#1 ------------------------------CTTTTTTTTTCCCTCACACTCGCATGTAAT 30
******************************
consensus_1231#0 ATA--ATCTTAATACCTCTCTTATCGCTCTCTGATTCTGTAATAATAATTTTCTTTGGTT 178
consensus_1231#1 ATATAATCTTAATACCTCTCTTATCGCTCTCTGATTCTGTAATAATAATNNTCTTTGNNT 90
*** ******************************************** ****** *
consensus_1231#0 TGTTCTCTGTGTACATACTCATCTCGTTGAGCTGGCTCCGCGAATGGGGGATTTATCCTG 238
consensus_1231#1 TGTTCTCTGTGTACATACTCATCTCGTTGAGCTGGCTCCGCGAATGGGGGATTTATCCTG 150
************************************************************
consensus_1231#0 TGCGTACCTTCATCGACAAGGAAGGACATTCGATTATCAACCCGCCCATCGTTTTACGGA 298
consensus_1231#1 TGCGTACCTTCATCGACAAGGAAGGACATTCGATTATCAACCCGCCCATCGTTTTACGGA 210
************************************************************
consensus_1231#0 ATTCCTGTTGGAAAAAATTTTCTCGTGAAAGTTTT-CGTTGGCGTCATC--CACCATCAT 355
consensus_1231#1 ATTCCAGGTGGCGACCCCCACTAAAGAGCAGTGGTGCGCAGGTGGGGACAGCGCTGTAGC 270
***** * *** * *** * ** ** * * * * *
consensus_1231#0 CATTCTCTCTCTTCCTCTCTCTCTCTCTTTCTCTCTCTTTCATGCAACAATTCAACTCAC 415
consensus_1231#1 GACAGGCCCCGGGGCCCCAGCTCCTAAATGGCGTTCAATGCGCGCG--GGTCTTGCTGCT 328
* * * * * *** * * * * ** * **
consensus_1231#0 AACTTTGCATAAAC-TGATCTAGAAAGAAAATTCTGTAAAACGAGGGGGAACGGAATAAA 474
consensus_1231#1 GGCGACGCCTAGATGCGCTCCCGTAATCGACGCCACTGACGTACGATTCCTCCTCGTTGC 388
* ** ** * * ** * ** * * * * * * *
consensus_1231#0 GCCACTTTTACTCGATACAACGATCTCTTTCTAGAACAAGATGTATCTACGNNGTGTCTA 534
consensus_1231#1 CGTAGTCGTGTTCACCACGATCGCCCCGATCACGATCCATCCTCTCCAGCCTCGACTTCC 448
* * * ** ** * * * ** ** * * * * * *
consensus_1231#0 CGAGTATATAATATACGAGTATAGAAACGATATAATTACGAAATCAATCAAGNCTTTTCT 594
consensus_1231#1 GGCTCCCCTCGCTCACGTGTCCACCGCT-------------------------------- 476
* * *** ** *
consensus_1231#0 TTTTTTAATCGAGATAAGA 613
consensus_1231#1 -------------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |