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These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 1242 cluster # 1242       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1242#0 length = 437 sequences # 1  
 consensus_1242#1 length = 330 sequences # 1  
consensusID : consensus_1242#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence 
                              [TCTCAGATTATCATTGCAACAGGGAACCNNTTCGTCTGTATTTCGTAGGAATATGGTCGAACGTAATATGACCAAATCGGCGTATATCCTTGCGACTGTTGGCCTGTCTATGAGTATATTTTCTGTGAGAAAAATGTTAACCTCTAAACACGGACGTCATTTGTAACAAGTTTATTAAAATCAGCAGCAACAAATACAGTTCTAAAAAGAAAAGAAACGAAAAGAAAATAGATAAAAAAGAAAGAAGAAAAAAATAGGATTCATCATATCTGAATCAATTATTATTTTCTTCTTTCTTTTTTCCCTCTCTCTCTCTCCCTTTCATTTCACCGNTTGTCATCGTTTGAAAAATGAAACGCGATTGGAAATCTTACGATCCGTCTTACTCCGCTTCTAATACTCGTCATCATCATCATCATCACCATCATTATCATCAT]

[+] EMBL BI516971             [TCTCAGATTATCATTGCAACAGGGAACCNNTTCGTCTGTATTTCGTAGGAATATGGTCGAACGTAATATGACCAAATCGGCGTATATCCTTGCGACTGTTGGCCTGTCTATGAGTATATTTTCTGTGAGAAAAATGTTAACCTCTAAACACGGACGTCATTTGTAACAAGTTTATTAAAATCAGCAGCAACAAATACAGTTCTAAAAAGAAAAGAAACGAAAAGAAAATAGATAAAAAAGAAAGAAGAAAAAAATAGGATTCATCATATCTGAATCAATTATTATTTTCTTCTTTCTTTTTTCCCTCTCTCTCTCTCCCTTTCATTTCACCGNTTGTCATCGTTTGAAAAATGAAACGCGATTGGAAATCTTACGATCCGTCTTACTCCGCTTCTAATACTCGTCATCATCATCATCATCACCATCATTATCATCAT]




>consensus_1242#0
TCTCAGATTATCATTGCAACAGGGAACCNNTTCGTCTGTATTTCGTAGGAATATGGTCGA
ACGTAATATGACCAAATCGGCGTATATCCTTGCGACTGTTGGCCTGTCTATGAGTATATT
TTCTGTGAGAAAAATGTTAACCTCTAAACACGGACGTCATTTGTAACAAGTTTATTAAAA
TCAGCAGCAACAAATACAGTTCTAAAAAGAAAAGAAACGAAAAGAAAATAGATAAAAAAG
AAAGAAGAAAAAAATAGGATTCATCATATCTGAATCAATTATTATTTTCTTCTTTCTTTT
TTCCCTCTCTCTCTCTCCCTTTCATTTCACCGNTTGTCATCGTTTGAAAAATGAAACGCG
ATTGGAAATCTTACGATCCGTCTTACTCCGCTTCTAATACTCGTCATCATCATCATCATC
ACCATCATTATCATCAT

consensusID : consensus_1242#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 330
fasta sequence 
                              [GCCACTCTTTATGCTCTCAGATTATCATTGCAACAGGGAACCGTTTCGTCTGTATTTCGTAGGAATATGGTCGAACGTAATATGACCAAATCGGCGTATATCCTTGCGACTGTTGGCCTGTCTATGAGTATATTTTCTGTGAGAAAAATGTTAACCTCTAAACACGGACGTCATTTGTAACAAGTTTATTAAAATCAGCAGCAACAAATACAGTTCTAAAAAGAAAAGAAACGAAAAGAAAATAGATAAAAAAGAAAGAAGAAAAAAATAGGATTCATCATATCTGAATCAATTATTATTGGCAAAGGAAATTTTTCATCGAATTTTAGC]

[+] EMBL BI507888             [GCCACTCTTTATGCTCTCAGATTATCATTGCAACAGGGAACCGTTTCGTCTGTATTTCGTAGGAATATGGTCGAACGTAATATGACCAAATCGGCGTATATCCTTGCGACTGTTGGCCTGTCTATGAGTATATTTTCTGTGAGAAAAATGTTAACCTCTAAACACGGACGTCATTTGTAACAAGTTTATTAAAATCAGCAGCAACAAATACAGTTCTAAAAAGAAAAGAAACGAAAAGAAAATAGATAAAAAAGAAAGAAGAAAAAAATAGGATTCATCATATCTGAATCAATTATTATTGGCAAAGGAAATTTTTCATCGAATTTTAGC]




>consensus_1242#1
GCCACTCTTTATGCTCTCAGATTATCATTGCAACAGGGAACCGTTTCGTCTGTATTTCGT
AGGAATATGGTCGAACGTAATATGACCAAATCGGCGTATATCCTTGCGACTGTTGGCCTG
TCTATGAGTATATTTTCTGTGAGAAAAATGTTAACCTCTAAACACGGACGTCATTTGTAA
CAAGTTTATTAAAATCAGCAGCAACAAATACAGTTCTAAAAAGAAAAGAAACGAAAAGAA
AATAGATAAAAAAGAAAGAAGAAAAAAATAGGATTCATCATATCTGAATCAATTATTATT
GGCAAAGGAAATTTTTCATCGAATTTTAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1242#0      --------------TCTCAGATTATCATTGCAACAGGGAACCNNTTCGTCTGTATTTCGT 46
consensus_1242#1      GCCACTCTTTATGCTCTCAGATTATCATTGCAACAGGGAACCGTTTCGTCTGTATTTCGT 60
                                    ****************************  ****************

consensus_1242#0      AGGAATATGGTCGAACGTAATATGACCAAATCGGCGTATATCCTTGCGACTGTTGGCCTG 106
consensus_1242#1      AGGAATATGGTCGAACGTAATATGACCAAATCGGCGTATATCCTTGCGACTGTTGGCCTG 120
                      ************************************************************

consensus_1242#0      TCTATGAGTATATTTTCTGTGAGAAAAATGTTAACCTCTAAACACGGACGTCATTTGTAA 166
consensus_1242#1      TCTATGAGTATATTTTCTGTGAGAAAAATGTTAACCTCTAAACACGGACGTCATTTGTAA 180
                      ************************************************************

consensus_1242#0      CAAGTTTATTAAAATCAGCAGCAACAAATACAGTTCTAAAAAGAAAAGAAACGAAAAGAA 226
consensus_1242#1      CAAGTTTATTAAAATCAGCAGCAACAAATACAGTTCTAAAAAGAAAAGAAACGAAAAGAA 240
                      ************************************************************

consensus_1242#0      AATAGATAAAAAAGAAAGAAGAAAAAAATAGGATTCATCATATCTGAATCAATTATTATT 286
consensus_1242#1      AATAGATAAAAAAGAAAGAAGAAAAAAATAGGATTCATCATATCTGAATCAATTATTATT 300
                      ************************************************************

consensus_1242#0      TTCTTCTTTCTTTTTTCCCTCTCTCTCTCTCCCTTTCATTTCACCGNTTGTCATCGTTTG 346
consensus_1242#1      GGCAAAGGAAATTTTTCATCGAATTTTAGC------------------------------ 330
                        *        ******      * *                                  

consensus_1242#0      AAAAATGAAACGCGATTGGAAATCTTACGATCCGTCTTACTCCGCTTCTAATACTCGTCA 406
consensus_1242#1      ------------------------------------------------------------
                                                                                  

consensus_1242#0      TCATCATCATCATCACCATCATTATCATCAT 437
consensus_1242#1      -------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)