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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1244#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence
[ATCTTAAATCATATTATTATTATCATGATCATATATTTATTTATCTATATTACTTTATATTAGTCATTTGCAGAATGTAAGGGTATTATGCTCCATAGAGGCAAAATGTTTTATGAGAAATTAGTAGCTGCCAGAGGAAAAGTAGCAAAAGTTGCAGCACATTTCATTAAGGATGGCTCTGTAATTTTCATTTATTTTGAAATTTTTTCATTTATTTGAAAATTTTTTTTGGTTTTCTATTTTTTTATTATATTTATTACAGAAAATACTTACTCATTCAAAATCTAGAGTTGTATTGCAAGCAATGAAAGAAGCTGTTGAAAGTAATAAAATATTTGAAGTATATGTAACATGTTCTTCTCCAGATAATAGTGGGGAAGAAATGTATGAAAATTTAACAAAATTAGGTTTATCTTGTACATTGATATTAGATTCTGCAATGGGATATGTCATGGAACAAGTTGATATGGTCATGGTAGGAGCAGAAGGGGTTGCNGAAAGTGGAGGTGTTATTAACAAGNNNGGCACATATACAATGGCAATGTGTGCTAAAGAGNTNANGAAACCATTTTATGTCTTAACAGAGAGTTTCAAATTTTCAAGAATATATCCCTTAAATCAAGTAGATCTTCCAAATGAGTTTAAATATACAGCAAGTA]
[+] EMBL BI507884 [ATCTTAAATCATATTATTATTATCATGATCATATATTTATTTATCTATATTACTTTATATTAGTCATTTGCAGAATGTAAGGGTATTATGCTCCATAGAGGCAAAATGTTTTATGAGAAATTAGTAGCTGCCAGAGGAAAAGTAGCAAAAGTTGCAGCACATTTCATTAAGGATGGCTCTGTAATTTTCATTTATTTTGAAATTTTTTCATTTATTTGAAAATTTTTTTTGGTTTTCTATTTTTTTATTATATTTATTACAGAAAATACTTACTCATTCAAAATCTAGAGTTGTATTGCAAGCAATGAAAGAAGCTGTTGAAAGTAATAAAATATTTGAAGTATATGTAACATGTTCTTCTCCAGATAATAGTGGGGAAGAAATGTATGAAAATTTAACAAAATTAGGTTTATCTTGTACATTGATATTAGATTCTGCAATGGGATATGTCATGGAACAAGTTGATATGGTCATGGTAGGAGCAGAAGGGGTTGCNGAAAGTGGAGGTGTTATTAACAAGNNNGGCACATATACAATGGCAATGTGTGCTAAAGAGNTNANGAAACCATTTTATGTCTTAACAGAGAGTTTCAAATTTTCAAGAATATATCCCTTAAATCAAGTAGATCTTCCAAATGAGTTTAAATATACAGCAAGTA]
consensusID : consensus_1244#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence
[TCTGTCAATACTTTAATGATATTATCAAAGATGAAAAAGATGTTTCTGCTGGAATGGCTGCTATACGTACACTATTAAAAGTTTTGGAGTATTCAAAGTCTGAAACGGTTCAAGAACTCAGGTACTGTTTACAGAATGCAATAGATGCAATGAGATCTACTGAAAATCCTGTAACTGCCATTGCATCTGGAAGTGAATTATTTCTTCGTTTTATAACTTTGGCTACATTAGATACTCCTTCATTTGCAGAATGTAAGGGTATTATGCTCCATAGAGGCAAAATGTTTTATGAGAAATTAGTAGCTGCCAGAGGAAAAGTAGCAAAAGTTGCAGCACATTTCATTAAGGATGGCTCTGTAATTTTCATTTATTTTGAAATTTTTTCATTTATTTGAAAATTTTTTTTGGTTTTCTATTTTTTTATTATATTTATTACAGAAAATACTTACTCATTCAAAATCTAGAGTTGTATTGCAAGCAATGAAAGAAGCTGTTGAAAGTAATAAAATATTTGAAGTATATGTAACATGTTCTTCTCCAGATAATAGTGGATTCTGCAATGGGATATGTCATGGAACAA]
[+] EMBL BI508947 [TCTGTCAATACTTTAATGATATTATCAAAGATGAAAAAGATGTTTCTGCTGGAATGGCTGCTATACGTACACTATTAAAAGTTTTGGAGTATTCAAAGTCTGAAACGGTTCAAGAACTCAGGTACTGTTTACAGAATGCAATAGATGCAATGAGATCTACTGAAAATCCTGTAACTGCCATTGCATCTGGAAGTGAATTATTTCTTCGTTTTATAACTTTGGCTACATTAGATACTCCTTCATTTGCAGAATGTAAGGGTATTATGCTCCATAGAGGCAAAATGTTTTATGAGAAATTAGTAGCTGCCAGAGGAAAAGTAGCAAAAGTTGCAGCACATTTCATTAAGGATGGCTCTGTAATTTTCATTTATTTTGAAATTTTTTCATTTATTTGAAAATTTTTTTTGGTTTTCTATTTTTTTATTATATTTATTACAGAAAATACTTACTCATTCAAAATCTAGAGTTGTATTGCAAGCAATGAAAGAAGCTGTTGAAAGTAATAAAATATTTGAAGTATATGTAACATGTTCTTCTCCAGATAATAGTGGATTCTGCAATGGGATATGTCATGGAACAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1244#0 ------------------------------------------------------------
consensus_1244#1 TCTGTCAATACTTTAATGATATTATCAAAGATGAAAAAGATGTTTCTGCTGGAATGGCTG 60
consensus_1244#0 ------------------------------------------------------------
consensus_1244#1 CTATACGTACACTATTAAAAGTTTTGGAGTATTCAAAGTCTGAAACGGTTCAAGAACTCA 120
consensus_1244#0 --------------------------------------ATCTTAAATCATATTATTATTA 22
consensus_1244#1 GGTACTGTTTACAGAATGCAATAGATGCAATGAGATCTACTGAAAATCCTGTAACTGCCA 180
* ***** * * * * *
consensus_1244#0 TCATGATCATATAT---TTATTTATCTATATTA---CTTT----ATATTAG--------T 64
consensus_1244#1 TTGCATCTGGAAGTGAATTATTTCTTCGTTTTATAACTTTGGCTACATTAGATACTCCTT 240
* * * ****** * * *** **** * ***** *
consensus_1244#0 CATTTGCAGAATGTAAGGGTATTATGCTCCATAGAGGCAAAATGTTTTATGAGAAATTAG 124
consensus_1244#1 CATTTGCAGAATGTAAGGGTATTATGCTCCATAGAGGCAAAATGTTTTATGAGAAATTAG 300
************************************************************
consensus_1244#0 TAGCTGCCAGAGGAAAAGTAGCAAAAGTTGCAGCACATTTCATTAAGGATGGCTCTGTAA 184
consensus_1244#1 TAGCTGCCAGAGGAAAAGTAGCAAAAGTTGCAGCACATTTCATTAAGGATGGCTCTGTAA 360
************************************************************
consensus_1244#0 TTTTCATTTATTTTGAAATTTTTTCATTTATTTGAAAATTTTTTTTGGTTTTCTATTTTT 244
consensus_1244#1 TTTTCATTTATTTTGAAATTTTTTCATTTATTTGAAAATTTTTTTTGGTTTTCTATTTTT 420
************************************************************
consensus_1244#0 TTATTATATTTATTACAGAAAATACTTACTCATTCAAAATCTAGAGTTGTATTGCAAGCA 304
consensus_1244#1 TTATTATATTTATTACAGAAAATACTTACTCATTCAAAATCTAGAGTTGTATTGCAAGCA 480
************************************************************
consensus_1244#0 ATGAAAGAAGCTGTTGAAAGTAATAAAATATTTGAAGTATATGTAACATGTTCTTCTCCA 364
consensus_1244#1 ATGAAAGAAGCTGTTGAAAGTAATAAAATATTTGAAGTATATGTAACATGTTCTTCTCCA 540
************************************************************
consensus_1244#0 GATAATAGTGGGGAA-GAAATGTATGAAAATTTAACAAAATTAGGTTTATCTTGTACATT 423
consensus_1244#1 GATAATAGTGGATTCTGCAATG---GGATATGTCATGGAACAA----------------- 580
*********** * **** * * ** * * ** *
consensus_1244#0 GATATTAGATTCTGCAATGGGATATGTCATGGAACAAGTTGATATGGTCATGGTAGGAGC 483
consensus_1244#1 ------------------------------------------------------------
consensus_1244#0 AGAAGGGGTTGCNGAAAGTGGAGGTGTTATTAACAAGNNNGGCACATATACAATGGCAAT 543
consensus_1244#1 ------------------------------------------------------------
consensus_1244#0 GTGTGCTAAAGAGNTNANGAAACCATTTTATGTCTTAACAGAGAGTTTCAAATTTTCAAG 603
consensus_1244#1 ------------------------------------------------------------
consensus_1244#0 AATATATCCCTTAAATCAAGTAGATCTTCCAAATGAGTTTAAATATACAGCAAGTA 659
consensus_1244#1 --------------------------------------------------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |