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Apis mellifera
cluster # 1267 cluster # 1267       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1267#0 length = 464 sequences # 1  
 consensus_1267#1 length = 310 sequences # 1  
consensusID : consensus_1267#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 464
fasta sequence 
                              [TATCGTAATCGCGGGTCGTACCATTGTTGTTGCAGCAAGAACTCCACCTCGTATTTCAAACTGGACTCGTCTGGGGAAGCCAAACTTAGCAACAGCACGCTCACGTTCACGGTCAAGGTTCCGCGAAGGTGGGTGCGAAGGTGTTGGTGCGACGTGTAGTGGTTATTGTTCTGGTTCTTGTACTGGTTCTTGGGGTCGTTAGAGGAGGTCGACGACCGGTTCGACAGGCCGGTGGCGTCACCTGGCCATCGCATTCCGCAGCAGAAATCCGCATCTTGGACCGGGGGTAGAAGCCGCTTGTCGTAACGGGTCGACAGCAGCAGGTTGTCCAGGATCTCCTTGTCCGACTTGCCGTCCTCGAAGATGTCCTCGGCACGCACGAGAGTGACAAGAGTGAGGGCAAGTGTGAGGATACAGAGGATGGTGAAGATGAGGGAGCTTGCGAGGGAGGTGAGAGACAGCGA]

[+] EMBL BI507717             [TATCGTAATCGCGGGTCGTACCATTGTTGTTGCAGCAAGAACTCCACCTCGTATTTCAAACTGGACTCGTCTGGGGAAGCCAAACTTAGCAACAGCACGCTCACGTTCACGGTCAAGGTTCCGCGAAGGTGGGTGCGAAGGTGTTGGTGCGACGTGTAGTGGTTATTGTTCTGGTTCTTGTACTGGTTCTTGGGGTCGTTAGAGGAGGTCGACGACCGGTTCGACAGGCCGGTGGCGTCACCTGGCCATCGCATTCCGCAGCAGAAATCCGCATCTTGGACCGGGGGTAGAAGCCGCTTGTCGTAACGGGTCGACAGCAGCAGGTTGTCCAGGATCTCCTTGTCCGACTTGCCGTCCTCGAAGATGTCCTCGGCACGCACGAGAGTGACAAGAGTGAGGGCAAGTGTGAGGATACAGAGGATGGTGAAGATGAGGGAGCTTGCGAGGGAGGTGAGAGACAGCGA]




>consensus_1267#0
TATCGTAATCGCGGGTCGTACCATTGTTGTTGCAGCAAGAACTCCACCTCGTATTTCAAA
CTGGACTCGTCTGGGGAAGCCAAACTTAGCAACAGCACGCTCACGTTCACGGTCAAGGTT
CCGCGAAGGTGGGTGCGAAGGTGTTGGTGCGACGTGTAGTGGTTATTGTTCTGGTTCTTG
TACTGGTTCTTGGGGTCGTTAGAGGAGGTCGACGACCGGTTCGACAGGCCGGTGGCGTCA
CCTGGCCATCGCATTCCGCAGCAGAAATCCGCATCTTGGACCGGGGGTAGAAGCCGCTTG
TCGTAACGGGTCGACAGCAGCAGGTTGTCCAGGATCTCCTTGTCCGACTTGCCGTCCTCG
AAGATGTCCTCGGCACGCACGAGAGTGACAAGAGTGAGGGCAAGTGTGAGGATACAGAGG
ATGGTGAAGATGAGGGAGCTTGCGAGGGAGGTGAGAGACAGCGA

consensusID : consensus_1267#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 310
fasta sequence 
                              [ATCGTAATCGCGGGTCGTACCATTGTTGTTGCAGCAAGAACTCCACCTCGTATTTCAAACTGGACTCGTCTGGGGAAGCCAAACTTAGCAACAGCACGCTCACGTTCACGGTCAAGGTTCCTTGGACCGGGGGTAGAAGCCGCTTGTCGTAACGGGTCGACAGCAGCAGGTTGTCCAGGATCTCCTTGTCCGACTTGCCGTCCTCGAAGATGTCCTCGGCACGCACGAGAGTGACAAGAGTGAGGGCAAGTGTGAGGATACAGAGGATGGTGAAGATGAGGGAGCTTGCGAGGGAGGTAAGAGACAGCGA]

[+] EMBL BI508873             [ATCGTAATCGCGGGTCGTACCATTGTTGTTGCAGCAAGAACTCCACCTCGTATTTCAAACTGGACTCGTCTGGGGAAGCCAAACTTAGCAACAGCACGCTCACGTTCACGGTCAAGGTTCCTTGGACCGGGGGTAGAAGCCGCTTGTCGTAACGGGTCGACAGCAGCAGGTTGTCCAGGATCTCCTTGTCCGACTTGCCGTCCTCGAAGATGTCCTCGGCACGCACGAGAGTGACAAGAGTGAGGGCAAGTGTGAGGATACAGAGGATGGTGAAGATGAGGGAGCTTGCGAGGGAGGTAAGAGACAGCGA]




>consensus_1267#1
ATCGTAATCGCGGGTCGTACCATTGTTGTTGCAGCAAGAACTCCACCTCGTATTTCAAAC
TGGACTCGTCTGGGGAAGCCAAACTTAGCAACAGCACGCTCACGTTCACGGTCAAGGTTC
CTTGGACCGGGGGTAGAAGCCGCTTGTCGTAACGGGTCGACAGCAGCAGGTTGTCCAGGA
TCTCCTTGTCCGACTTGCCGTCCTCGAAGATGTCCTCGGCACGCACGAGAGTGACAAGAG
TGAGGGCAAGTGTGAGGATACAGAGGATGGTGAAGATGAGGGAGCTTGCGAGGGAGGTAA
GAGACAGCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1267#0      TATCGTAATCGCGGGTCGTACCATTGTTGTTGCAGCAAGAACTCCACCTCGTATTTCAAA 60
consensus_1267#1      -ATCGTAATCGCGGGTCGTACCATTGTTGTTGCAGCAAGAACTCCACCTCGTATTTCAAA 59
                       ***********************************************************

consensus_1267#0      CTGGACTCGTCTGGGGAAGCCAAACTTAGCAACAGCACGCTCACGTTCACGGTCAAGGTT 120
consensus_1267#1      CTGGACTCGTCTGGGGAAGCCAAACTTAGCAACAGCACGCTCACGTTCACGGTCAAGGTT 119
                      ************************************************************

consensus_1267#0      CCGCGAAGGTGGGTGCGAAGGTGTTGGTGCGACGTGTAGTGGTTATTGTTCTGGTTCTTG 180
consensus_1267#1      CC---------------------------------------------------------- 121
                      **                                                          

consensus_1267#0      TACTGGTTCTTGGGGTCGTTAGAGGAGGTCGACGACCGGTTCGACAGGCCGGTGGCGTCA 240
consensus_1267#1      ------------------------------------------------------------
                                                                                  

consensus_1267#0      CCTGGCCATCGCATTCCGCAGCAGAAATCCGCATCTTGGACCGGGGGTAGAAGCCGCTTG 300
consensus_1267#1      -----------------------------------TTGGACCGGGGGTAGAAGCCGCTTG 146
                                                         *************************

consensus_1267#0      TCGTAACGGGTCGACAGCAGCAGGTTGTCCAGGATCTCCTTGTCCGACTTGCCGTCCTCG 360
consensus_1267#1      TCGTAACGGGTCGACAGCAGCAGGTTGTCCAGGATCTCCTTGTCCGACTTGCCGTCCTCG 206
                      ************************************************************

consensus_1267#0      AAGATGTCCTCGGCACGCACGAGAGTGACAAGAGTGAGGGCAAGTGTGAGGATACAGAGG 420
consensus_1267#1      AAGATGTCCTCGGCACGCACGAGAGTGACAAGAGTGAGGGCAAGTGTGAGGATACAGAGG 266
                      ************************************************************

consensus_1267#0      ATGGTGAAGATGAGGGAGCTTGCGAGGGAGGTGAGAGACAGCGA 464
consensus_1267#1      ATGGTGAAGATGAGGGAGCTTGCGAGGGAGGTAAGAGACAGCGA 310
                      ******************************** ***********


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)