cluster # 1292

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 1292 cluster # 1292 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1292#0 length = 449 sequences # 1

consensus_1292#1 length = 379 sequences # 1

consensusID : consensus_1292#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence

                              [TACGAAGTATATCGAAGTATATTGATCACATCGAGAAACAACAACGACACACGACATTAATCAGCGATAACAATAGCGTAAGACTTCTTTTTTTTTTTTCTTTTCTTTTCTTTTCTTTTTTAATTATTTTTTATTTTATTTATCGTTCGCTTTTACGCGTGACGCATGCATTAAAAGTAGTCGGGACTTTAAAGAGCATACAGCGTTANNGGACACATCGAGCGAGAAGGCATATATATATATATATACGAGACGACAGGCAGAGAGAAAAAAAGTTTGTTTACCTTTAGGAGGAAAGGACGAGTGAGAGAAGAGGAAGAGAGAAAGAGAGAGAGGAAAGAAAAGAAATGACGAAAATAAAATCGAATCTACGCGCACAATCTACGCGAGAGTTTTTTTTTTACGCTCGTCGGTGAAAGTTCTCCGGCAATCCAGCTGGTCGAAGGGCT]

[+] EMBL BI514866             [TACGAAGTATATCGAAGTATATTGATCACATCGAGAAACAACAACGACACACGACATTAATCAGCGATAACAATAGCGTAAGACTTCTTTTTTTTTTTTCTTTTCTTTTCTTTTCTTTTTTAATTATTTTTTATTTTATTTATCGTTCGCTTTTACGCGTGACGCATGCATTAAAAGTAGTCGGGACTTTAAAGAGCATACAGCGTTANNGGACACATCGAGCGAGAAGGCATATATATATATATATACGAGACGACAGGCAGAGAGAAAAAAAGTTTGTTTACCTTTAGGAGGAAAGGACGAGTGAGAGAAGAGGAAGAGAGAAAGAGAGAGAGGAAAGAAAAGAAATGACGAAAATAAAATCGAATCTACGCGCACAATCTACGCGAGAGTTTTTTTTTTACGCTCGTCGGTGAAAGTTCTCCGGCAATCCAGCTGGTCGAAGGGCT]




>consensus_1292#0
TACGAAGTATATCGAAGTATATTGATCACATCGAGAAACAACAACGACACACGACATTAA
TCAGCGATAACAATAGCGTAAGACTTCTTTTTTTTTTTTCTTTTCTTTTCTTTTCTTTTT
TAATTATTTTTTATTTTATTTATCGTTCGCTTTTACGCGTGACGCATGCATTAAAAGTAG
TCGGGACTTTAAAGAGCATACAGCGTTANNGGACACATCGAGCGAGAAGGCATATATATA
TATATATACGAGACGACAGGCAGAGAGAAAAAAAGTTTGTTTACCTTTAGGAGGAAAGGA
CGAGTGAGAGAAGAGGAAGAGAGAAAGAGAGAGAGGAAAGAAAAGAAATGACGAAAATAA
AATCGAATCTACGCGCACAATCTACGCGAGAGTTTTTTTTTTACGCTCGTCGGTGAAAGT
TCTCCGGCAATCCAGCTGGTCGAAGGGCT

consensusID : consensus_1292#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 379
fasta sequence

                              [CTTTTCTTTTTTAATTATTTTTTATTTTTCGTTTTATTTATCGTTCGCTTTTACGCGTGACGCATGCATTAAAAGTAGTCGTGACTTTAAAGAGCATACAGCGTTAGTGGACACATCGAGCGAGAAGGCATATATATATATATACGAGACGACAGGCAGAAAAAAAAAACAAAAAAAAAGAAAAAGAGAAAAAAATAGTCACCGGAACAATATACATACATACATACATCACATATAACACACGCATATGTTACGTATAAAAGAGACACAAAATCTGATCGCTAAAAATAAGTGCGCGCGCGTAGCCGAATCGGGATTATGTAACAAATTAAATAGAAGAAAACAGAATATTAAAAAGAAACACACACACAAAAAAAAA]

[+] EMBL BI507488             [CTTTTCTTTTTTAATTATTTTTTATTTTTCGTTTTATTTATCGTTCGCTTTTACGCGTGACGCATGCATTAAAAGTAGTCGTGACTTTAAAGAGCATACAGCGTTAGTGGACACATCGAGCGAGAAGGCATATATATATATATACGAGACGACAGGCAGAAAAAAAAAACAAAAAAAAAGAAAAAGAGAAAAAAATAGTCACCGGAACAATATACATACATACATACATCACATATAACACACGCATATGTTACGTATAAAAGAGACACAAAATCTGATCGCTAAAAATAAGTGCGCGCGCGTAGCCGAATCGGGATTATGTAACAAATTAAATAGAAGAAAACAGAATATTAAAAAGAAACACACACACAAAAAAAAA]




>consensus_1292#1
CTTTTCTTTTTTAATTATTTTTTATTTTTCGTTTTATTTATCGTTCGCTTTTACGCGTGA
CGCATGCATTAAAAGTAGTCGTGACTTTAAAGAGCATACAGCGTTAGTGGACACATCGAG
CGAGAAGGCATATATATATATATACGAGACGACAGGCAGAAAAAAAAAACAAAAAAAAAG
AAAAAGAGAAAAAAATAGTCACCGGAACAATATACATACATACATACATCACATATAACA
CACGCATATGTTACGTATAAAAGAGACACAAAATCTGATCGCTAAAAATAAGTGCGCGCG
CGTAGCCGAATCGGGATTATGTAACAAATTAAATAGAAGAAAACAGAATATTAAAAAGAA
ACACACACACAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1292#0      TACGAAGTATATCGAAGTATATTGATCACATCGAGAAACAACAACGACACACGACATTAA 60
consensus_1292#1      ------------------------------------------------------------
                                                                                  

consensus_1292#0      TCAGCGATAACAATAGCGTAAGACTTCTTTTTTTTTTTTCTTTTCTTTTCTTTTCTTTTT 120
consensus_1292#1      ---------------------------------------CTTTTCTTTTTTAATTATTTT 21
                                                             ********** *  *  ****

consensus_1292#0      TAATTATTTTTTATTTTATTTATCGTTCGCTTTTACGCGTGACGCATGCATTAAAAGTAG 180
consensus_1292#1      T---TATTTTTCGTTTTATTTATCGTTCGCTTTTACGCGTGACGCATGCATTAAAAGTAG 78
                      *   *******  ***********************************************

consensus_1292#0      TCGGGACTTTAAAGAGCATACAGCGTTANNGGACACATCGAGCGAGAAGGCATATATATA 240
consensus_1292#1      TCGTGACTTTAAAGAGCATACAGCGTTAGTGGACACATCGAGCGAGAAGGCATATATATA 138
                      *** ************************  ******************************

consensus_1292#0      TATATATACGAGACGACAGGCAGAGAGAAAAAAAGTTTGTTTACCTTTAGGAGGAAAGGA 300
consensus_1292#1      TATATA--CGAGACGACAGGCAGAAAAAAAAAACAAAAAAAAAGA--AAAAGAGAAAAAA 194
                      ******  **************** * ******         *     *    ****  *

consensus_1292#0      CGAGTGAGAGAAGAGGAAGAGAGAAAGAGAGAGAGGAAAGAAAAGAAATGACGAAAATAA 360
consensus_1292#1      ATAGTCACCGGAACAATATACATACATACATACATCACATATAACACACG-CATATGTTA 253
                        *** *  * *     * * * * * * * * *  * * * ** * * * *  *  * *

consensus_1292#0      AATCGAATCTACGCGCACAATCTACGCGAGAGTTTTTTTTTTACGCTCGTCGGTGAA--- 417
consensus_1292#1      CGTATAAAAGAGACACAAAATCTGATCGCTAAAAATAAGTGCGCGCGCGTAGCCGAATCG 313
                        *  **   *  * ** *****   **  *    *   *   *** *** *  ***   

consensus_1292#0      -AGTTCTCCGGCAATCCAGCTGGTCGAAGGGCT--------------------------- 449
consensus_1292#1      GGATTATGTAACAAATTAAATAGAAGAAAACAGAATATTAAAAAGAAACACACACACAAA 373
                         ** *    ***   *  * *  ***                                

consensus_1292#0      ------
consensus_1292#1      AAAAAA 379

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)