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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1311#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence
[ACGTATATATCTCCTGTTGGTGGATCAACCTACAGCATGGCCGCGTAAAAATGCAGGACAACGGCAACGGTTTGTCGGAAGAGTGAGCAGGAATGTCGACGAGTCTGCTTCCTGTTGCAGCCCGAAAATTTACTCCTCGCAAGTAAGGCGAAGGGCGCGGCTGTGAAATTAGCGGACTTTGGATTGGCGATCGAGGTGCAGGGTGAAGCGCAGGCATGGTTCGTGAGATTACACGACAGCATACAGGAGGAGAACTATCATTACCTCGTTTTTGACCTCGTAACCGGCGGCGAACTGTTCGAGGATATCGTGGCGCGAGAATTCTACAGCGAAGCGGACGCGTCTCACTGTATCCAACAAATCCTGGAAAGCGTACACCACTGCCACCACAATGGAGTTGCACAGGGACCTGAAAGTACGTAGAGAAACGAATGTGTTACACGGATGAACTAGAGAGCGCCATGCTTGAGAGGGTCCAGTACACCGGGAACGCAAAGGTTCAGTGTGTTTAACCGAACATTTTCAGATAAACGTTTAGGGATCGAATGATCGA]
[+] EMBL BI507350 [ACGTATATATCTCCTGTTGGTGGATCAACCTACAGCATGGCCGCGTAAAAATGCAGGACAACGGCAACGGTTTGTCGGAAGAGTGAGCAGGAATGTCGACGAGTCTGCTTCCTGTTGCAGCCCGAAAATTTACTCCTCGCAAGTAAGGCGAAGGGCGCGGCTGTGAAATTAGCGGACTTTGGATTGGCGATCGAGGTGCAGGGTGAAGCGCAGGCATGGTTCGTGAGATTACACGACAGCATACAGGAGGAGAACTATCATTACCTCGTTTTTGACCTCGTAACCGGCGGCGAACTGTTCGAGGATATCGTGGCGCGAGAATTCTACAGCGAAGCGGACGCGTCTCACTGTATCCAACAAATCCTGGAAAGCGTACACCACTGCCACCACAATGGAGTTGCACAGGGACCTGAAAGTACGTAGAGAAACGAATGTGTTACACGGATGAACTAGAGAGCGCCATGCTTGAGAGGGTCCAGTACACCGGGAACGCAAAGGTTCAGTGTGTTTAACCGAACATTTTCAGATAAACGTTTAGGGATCGAATGATCGA]
consensusID : consensus_1311#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 542 fasta sequence
[TCTACAGCGAAGCGGACGCGTCTCACTGTATCCAACAAATCCTGGAAAGCGTACACCACTGCCACCACAATGGAGTTGTGCACAGGGACCTGAAACCCGAAAATCTACTCCTCGCAAGTAAGGCGAAGGGCGCGGCTGTGAAATTAGCGGACTTTGGATTGGCGATCGAGGTGCAGGGTGAAGCGCAGGCATGGTTCGGTTTCGCTGGGACGCCCGGTTACCTGAGCCCGGAAGTCCTGAAGAAAGAGCCGTACGGCAAGCCAGTCGACATCTGGGCGTGCGGTGTCATTCTTTACATCCTTCTGGTCGGTTATCCGCCATTCTGGGACGAGGATCAGCATCGATTGTACGCGCAGATCAAGACCGGATCGTACGACTATCCAAGCCCAGAATGGGACACCGTCACGCCGGAAGCCAAGAACCTAATCAATCAGATGCTGACGGTGAACCCAAGCAAAAGGATCACCGCCAGCGAGGCATTGAAGCACCCATGGATCTGCCAACGTGAACGTGTCGCGTCCGTTGTCCACAGACAAGAGACT]
[+] EMBL AB013287 [TCTACAGCGAAGCGGACGCGTCTCACTGTATCCAACAAATCCTGGAAAGCGTACACCACTGCCACCACAATGGAGTTGTGCACAGGGACCTGAAACCCGAAAATCTACTCCTCGCAAGTAAGGCGAAGGGCGCGGCTGTGAAATTAGCGGACTTTGGATTGGCGATCGAGGTGCAGGGTGAAGCGCAGGCATGGTTCGGTTTCGCTGGGACGCCCGGTTACCTGAGCCCGGAAGTCCTGAAGAAAGAGCCGTACGGCAAGCCAGTCGACATCTGGGCGTGCGGTGTCATTCTTTACATCCTTCTGGTCGGTTATCCGCCATTCTGGGACGAGGATCAGCATCGATTGTACGCGCAGATCAAGACCGGATCGTACGACTATCCAAGCCCAGAATGGGACACCGTCACGCCGGAAGCCAAGAACCTAATCAATCAGATGCTGACGGTGAACCCAAGCAAAAGGATCACCGCCAGCGAGGCATTGAAGCACCCATGGATCTGCCAACGTGAACGTGTCGCGTCCGTTGTCCACAGACAAGAGACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1311#0 ACGTATATATCTCCTGTTGGTGGATCAACCTACAGCATGGCCGCGTAAAAATGCAGGACA 60
consensus_1311#1 ------------TCTACAGCGAAGCGGACGCGTCTCACTGTATCCAACAAATCCTGGAAA 48
** * ** ** * * * **** * *** *
consensus_1311#0 ACGGCAACGGTTTGTCGGAAGAGTGAGCAGGAATGTCGACGAGTCTGCTTCCTGTTGCAG 120
consensus_1311#1 GCGTACACCACT-GCCACCACAATG----GAGTTGTGCACAGGGAC--------CTGAAA 95
** ** * * * * * ** * *** ** * ** *
consensus_1311#0 CCCGAAAATTTACTCCTCGCAAGTAAGGCGAAGGGCGCGGCTGTGAAATTAGCGGACTTT 180
consensus_1311#1 CCCGAAAATCTACTCCTCGCAAGTAAGGCGAAGGGCGCGGCTGTGAAATTAGCGGACTTT 155
********* **************************************************
consensus_1311#0 GGATTGGCGATCGAGGTGCAGGGTGAAGCGCAGGCATGGTTCG-------TGAGA----- 228
consensus_1311#1 GGATTGGCGATCGAGGTGCAGGGTGAAGCGCAGGCATGGTTCGGTTTCGCTGGGACGCCC 215
******************************************* ** **
consensus_1311#0 --TTACACGA---CAGCA-TACAGGAGGAGAACTATCATTACCTCGTTTTTGACCTCGTA 282
consensus_1311#1 GGTTACCTGAGCCCGGAAGTCCTGAAGAAAGAGCCGTACGGCAAGCCAGTCGACATCTGG 275
**** ** * * * * * * ** * * * * * *** **
consensus_1311#0 ACCGGCGGCGAACTGTTCGAGGATATCGTGGCGCGAGAATTCTACA----GCGAAGCGGA 338
consensus_1311#1 GCGTGCGGTGTCATTCTTTACATCCTTCTGGT-CGGTTATCCGCCATTCTGGGACGAGGA 334
* **** * * * * * *** ** ** * ** * ** * ***
consensus_1311#0 CGCGTCTC-ACTGTATCCAACAAATCCTGGAAAGCGTACACCACTGCCACCACAATGGAG 397
consensus_1311#1 TCAGCATCGATTGTACGCG-CAGATCAAGACCGGATCGTACGACTATC-CAAGCCCAGAA 392
* ** * **** * ** *** * * ** *** * * * **
consensus_1311#0 TTGCACAGGGACCTGAAAGTACGTAGAGAAACGAATGTGTTACACGGATGAACTAGAGAG 457
consensus_1311#1 TGGGACACCGTCACGCCGGAA-GCCAAGAACCTAATCAATCAGATGC-TGA--CGGTGAA 448
* * *** * * * * * * **** * *** * * * * *** * **
consensus_1311#0 CGCCATGCTTGAGAGGGTCCAGTACACCGGGAACGCAAAGGTTCAGTGTGTTTAAC---- 513
consensus_1311#1 C-CCAAGC--AAAAGGATCACCGCCAGCGAGGCATTGAAGCACCCATGGATCTGCCAACG 505
* *** ** * *** ** ** ** * *** * ** * * *
consensus_1311#0 CGAACATTTTCAGATAAACGTTTAGGGATCGAATGATCGA 553
consensus_1311#1 TGAACGTGTCGCGTCCGTTGTCCACAGA-CAAGAGACT-- 542
**** * * * ** * ** * * **
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |