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Apis mellifera
cluster # 1319 cluster # 1319       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1319#0 length = 517 sequences # 1  
 consensus_1319#1 length = 197 sequences # 1  
consensusID : consensus_1319#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 517
fasta sequence 
                              [CATATTCATCGCCCAGATGCACGGGATCGCCTTGGGATTCGGTGAAATCATAACTGTTATGTGAGTAAAAAAAAAATTTTCTCCATTTATCTGTGTATATGAGTGTAAGAGTTTCTTCTCTCCTCTTTTCTCGTTCAAGCTTAACCTCGACCGCTGCGTCGGTGTCGTCGGCGTCGGTCCCAAGCGCGGCACTGGTCCTCCTCCTGGTCGTGTTGAGCGCCATCAACGCACCCGTCTACAACGTCTCCCTTCTCTTCACCATCGATTGGTTCGTGGATCGCATCCGTACCACGAACAACATGTTGGGCGATTGCTACGCCGCAGCCGTGGTCGAGCAGTTGTCGAAAAAGGAATTGATGGCGCTGGACGCGGCAGCCTATCAATCGGAAACCGTTTTGCCCACAACGATCGCGAACGGATGCATTTCCGCAAACAGGGTACCTGATCCCGACACCATCGTCGTCGAGATGCAAGACGACACGAGGATAGCCGGCGTCGCCAAGTAAACAAGCTTGTT]

[+] EMBL BI508601             [CATATTCATCGCCCAGATGCACGGGATCGCCTTGGGATTCGGTGAAATCATAACTGTTATGTGAGTAAAAAAAAAATTTTCTCCATTTATCTGTGTATATGAGTGTAAGAGTTTCTTCTCTCCTCTTTTCTCGTTCAAGCTTAACCTCGACCGCTGCGTCGGTGTCGTCGGCGTCGGTCCCAAGCGCGGCACTGGTCCTCCTCCTGGTCGTGTTGAGCGCCATCAACGCACCCGTCTACAACGTCTCCCTTCTCTTCACCATCGATTGGTTCGTGGATCGCATCCGTACCACGAACAACATGTTGGGCGATTGCTACGCCGCAGCCGTGGTCGAGCAGTTGTCGAAAAAGGAATTGATGGCGCTGGACGCGGCAGCCTATCAATCGGAAACCGTTTTGCCCACAACGATCGCGAACGGATGCATTTCCGCAAACAGGGTACCTGATCCCGACACCATCGTCGTCGAGATGCAAGACGACACGAGGATAGCCGGCGTCGCCAAGTAAACAAGCTTGTT]




>consensus_1319#0
CATATTCATCGCCCAGATGCACGGGATCGCCTTGGGATTCGGTGAAATCATAACTGTTAT
GTGAGTAAAAAAAAAATTTTCTCCATTTATCTGTGTATATGAGTGTAAGAGTTTCTTCTC
TCCTCTTTTCTCGTTCAAGCTTAACCTCGACCGCTGCGTCGGTGTCGTCGGCGTCGGTCC
CAAGCGCGGCACTGGTCCTCCTCCTGGTCGTGTTGAGCGCCATCAACGCACCCGTCTACA
ACGTCTCCCTTCTCTTCACCATCGATTGGTTCGTGGATCGCATCCGTACCACGAACAACA
TGTTGGGCGATTGCTACGCCGCAGCCGTGGTCGAGCAGTTGTCGAAAAAGGAATTGATGG
CGCTGGACGCGGCAGCCTATCAATCGGAAACCGTTTTGCCCACAACGATCGCGAACGGAT
GCATTTCCGCAAACAGGGTACCTGATCCCGACACCATCGTCGTCGAGATGCAAGACGACA
CGAGGATAGCCGGCGTCGCCAAGTAAACAAGCTTGTT

consensusID : consensus_1319#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 197
fasta sequence 
                              [CACGAGGATAGCCGGCGTCGCCAAGTAAACAAGCTTGTTGGTAGGGCTAGGCTATCACTTTGTAAGATTCGCAACGATCGCGATACCATTTCTCTTCCGTTTCTCTCTTTTATTCGTCGCTTTTCTATTTCCTGTGAAAAGAAAAGATTATTTATTCGCGAAACGATTCGATATATATAATCTTTTCTTTTCACAGG]

[+] EMBL BI507271             [CACGAGGATAGCCGGCGTCGCCAAGTAAACAAGCTTGTTGGTAGGGCTAGGCTATCACTTTGTAAGATTCGCAACGATCGCGATACCATTTCTCTTCCGTTTCTCTCTTTTATTCGTCGCTTTTCTATTTCCTGTGAAAAGAAAAGATTATTTATTCGCGAAACGATTCGATATATATAATCTTTTCTTTTCACAGG]




>consensus_1319#1
CACGAGGATAGCCGGCGTCGCCAAGTAAACAAGCTTGTTGGTAGGGCTAGGCTATCACTT
TGTAAGATTCGCAACGATCGCGATACCATTTCTCTTCCGTTTCTCTCTTTTATTCGTCGC
TTTTCTATTTCCTGTGAAAAGAAAAGATTATTTATTCGCGAAACGATTCGATATATATAA
TCTTTTCTTTTCACAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1319#0      CATATTCATCGCCCAGATGCACGGGATCGCCTTGGGATTCGGTGAAATCATAACTGTTAT 60
consensus_1319#1      ------------------------------------------------------------
                                                                                  

consensus_1319#0      GTGAGTAAAAAAAAAATTTTCTCCATTTATCTGTGTATATGAGTGTAAGAGTTTCTTCTC 120
consensus_1319#1      --------CACGAGGATAGCCGGCGTCGCCAAGTAAACAAGCTTGTTGGTAGGGCTAGGC 52
                               *  *  **   *  * *      **  * * *  ***  *     **   *

consensus_1319#0      TCCTCTTTTCTCGTTCAAGCTTAACCTCGACCGCTGCGTCGGTG-TCGTCGGCGTCGGTC 179
consensus_1319#1      TATCACTTTGT-----AAGATTCGCAACGATCGCGATACCATTTCTCTTCCGTTTCTCTC 107
                      *     *** *     *** **  *  *** ***     *  *  ** ** *  **  **

consensus_1319#0      CCAAGCGCGGCACTGGTCCTCCTCCTGGTCGTGTTGAGCGCCATCAACGCACCCGTCTAC 239
consensus_1319#1      TTTTATTCGTCGCTTTTCTATTTCCTGTGAAAAGAAAAGATTATTTATTCGCGAAACGAT 167
                             ** * **  **    *****         *     **  *  * *    * * 

consensus_1319#0      AACGTCTCCCTTCTCTTCACCATCGATTGGTTCGTGGATCGCATCCGTACCACGAACAAC 299
consensus_1319#1      TCGATATATATAATCTTTTCTTTTCACAGG------------------------------ 197
                          * *   *  ****  *  *  *  **                              

consensus_1319#0      ATGTTGGGCGATTGCTACGCCGCAGCCGTGGTCGAGCAGTTGTCGAAAAAGGAATTGATG 359
consensus_1319#1      ------------------------------------------------------------
                                                                                  

consensus_1319#0      GCGCTGGACGCGGCAGCCTATCAATCGGAAACCGTTTTGCCCACAACGATCGCGAACGGA 419
consensus_1319#1      ------------------------------------------------------------
                                                                                  

consensus_1319#0      TGCATTTCCGCAAACAGGGTACCTGATCCCGACACCATCGTCGTCGAGATGCAAGACGAC 479
consensus_1319#1      ------------------------------------------------------------
                                                                                  

consensus_1319#0      ACGAGGATAGCCGGCGTCGCCAAGTAAACAAGCTTGTT 517
consensus_1319#1      --------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)