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These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 1404 cluster # 1404       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1404#0 length = 575 sequences # 1  
 consensus_1404#1 length = 397 sequences # 1  
consensusID : consensus_1404#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 575
fasta sequence 
                              [TCAATCGCACGGCTGACTAAGCATCAATATGGTTAAATATACAGAACTTGGAAATGCGACATCAATAACTCCCTCCATCGAATTGAAACCAAACACAGCACCATATGATCCAAGATTTCCAAATCAAAACCAGACAAGATATTNNNATACTAGTTTTTTGGATTTTCATCGTTGCAAAAAACGACATAGTGAAGATTATGAAGCATGTCAATATTTCAAAAAAGTATATAATGCAATGTGCCCAAATGCTTGGATAGAAAAATGGAATGAACAGATTGAAAACGGAGTGTTTCCAGGAAATATATAATACAAGAGGCATCAAATTATAACTGCCTCTATAGTGATATTGTTTACATAATAACAGGATTTTACAATTTTAAAGTATCAAATAATTCCTGTTTGTAAAATAATATTTAATAAATTGATCATAGTTTAATTCTTATTTAGTTTTATTAATTAATATTTTTTTTATTTTACTGCAATTNNTAAATACAAATAGAAATTTAAATATTATATTTTATTATTAAATTTTGTAAAAATGTAAATTAATATTTCTAATCCCTATCCTCAACATA]

[+] EMBL BI506581             [TCAATCGCACGGCTGACTAAGCATCAATATGGTTAAATATACAGAACTTGGAAATGCGACATCAATAACTCCCTCCATCGAATTGAAACCAAACACAGCACCATATGATCCAAGATTTCCAAATCAAAACCAGACAAGATATTNNNATACTAGTTTTTTGGATTTTCATCGTTGCAAAAAACGACATAGTGAAGATTATGAAGCATGTCAATATTTCAAAAAAGTATATAATGCAATGTGCCCAAATGCTTGGATAGAAAAATGGAATGAACAGATTGAAAACGGAGTGTTTCCAGGAAATATATAATACAAGAGGCATCAAATTATAACTGCCTCTATAGTGATATTGTTTACATAATAACAGGATTTTACAATTTTAAAGTATCAAATAATTCCTGTTTGTAAAATAATATTTAATAAATTGATCATAGTTTAATTCTTATTTAGTTTTATTAATTAATATTTTTTTTATTTTACTGCAATTNNTAAATACAAATAGAAATTTAAATATTATATTTTATTATTAAATTTTGTAAAAATGTAAATTAATATTTCTAATCCCTATCCTCAACATA]




>consensus_1404#0
TCAATCGCACGGCTGACTAAGCATCAATATGGTTAAATATACAGAACTTGGAAATGCGAC
ATCAATAACTCCCTCCATCGAATTGAAACCAAACACAGCACCATATGATCCAAGATTTCC
AAATCAAAACCAGACAAGATATTNNNATACTAGTTTTTTGGATTTTCATCGTTGCAAAAA
ACGACATAGTGAAGATTATGAAGCATGTCAATATTTCAAAAAAGTATATAATGCAATGTG
CCCAAATGCTTGGATAGAAAAATGGAATGAACAGATTGAAAACGGAGTGTTTCCAGGAAA
TATATAATACAAGAGGCATCAAATTATAACTGCCTCTATAGTGATATTGTTTACATAATA
ACAGGATTTTACAATTTTAAAGTATCAAATAATTCCTGTTTGTAAAATAATATTTAATAA
ATTGATCATAGTTTAATTCTTATTTAGTTTTATTAATTAATATTTTTTTTATTTTACTGC
AATTNNTAAATACAAATAGAAATTTAAATATTATATTTTATTATTAAATTTTGTAAAAAT
GTAAATTAATATTTCTAATCCCTATCCTCAACATA

consensusID : consensus_1404#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 397
fasta sequence 
                              [AAATGCGACATCAATAACTCCCTCCATCGAATTGAAACCAAACACAGCACCATATGATCCAAGATTTCCAAATCAAAACCAGACAAGATATTGTTATACTAGTTTTTTGGATTTTCATCGTTGCAAAAAACGACATAGTGAAGATTATGAAGCATGTCAATATTTCAAAAAAGTATATAATGCAATGTGCCCAAATGCTTGGATAGAAAAATGGAATGAACAGATTGAAAACGGAGTGTTTCCAGGAAATATATAATACAAGAGGCATCAAATTATAACTGCCTCTATAGTGATATTGTTTACATAATAACAGGATTTTACAATTTTAAAGTATCAAATAATTCCTGTTTGTAAAATAATATTTAATAAATTGATCATAGTTTAAAAAAAAAAAAAA]

[+] EMBL BI509670             [AAATGCGACATCAATAACTCCCTCCATCGAATTGAAACCAAACACAGCACCATATGATCCAAGATTTCCAAATCAAAACCAGACAAGATATTGTTATACTAGTTTTTTGGATTTTCATCGTTGCAAAAAACGACATAGTGAAGATTATGAAGCATGTCAATATTTCAAAAAAGTATATAATGCAATGTGCCCAAATGCTTGGATAGAAAAATGGAATGAACAGATTGAAAACGGAGTGTTTCCAGGAAATATATAATACAAGAGGCATCAAATTATAACTGCCTCTATAGTGATATTGTTTACATAATAACAGGATTTTACAATTTTAAAGTATCAAATAATTCCTGTTTGTAAAATAATATTTAATAAATTGATCATAGTTTAAAAAAAAAAAAAA]




>consensus_1404#1
AAATGCGACATCAATAACTCCCTCCATCGAATTGAAACCAAACACAGCACCATATGATCC
AAGATTTCCAAATCAAAACCAGACAAGATATTGTTATACTAGTTTTTTGGATTTTCATCG
TTGCAAAAAACGACATAGTGAAGATTATGAAGCATGTCAATATTTCAAAAAAGTATATAA
TGCAATGTGCCCAAATGCTTGGATAGAAAAATGGAATGAACAGATTGAAAACGGAGTGTT
TCCAGGAAATATATAATACAAGAGGCATCAAATTATAACTGCCTCTATAGTGATATTGTT
TACATAATAACAGGATTTTACAATTTTAAAGTATCAAATAATTCCTGTTTGTAAAATAAT
ATTTAATAAATTGATCATAGTTTAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1404#0      TCAATCGCACGGCTGACTAAGCATCAATATGGTTAAATATACAGAACTTGGAAATGCGAC 60
consensus_1404#1      ---------------------------------------------------AAATGCGAC 9
                                                                         *********

consensus_1404#0      ATCAATAACTCCCTCCATCGAATTGAAACCAAACACAGCACCATATGATCCAAGATTTCC 120
consensus_1404#1      ATCAATAACTCCCTCCATCGAATTGAAACCAAACACAGCACCATATGATCCAAGATTTCC 69
                      ************************************************************

consensus_1404#0      AAATCAAAACCAGACAAGATATTNNNATACTAGTTTTTTGGATTTTCATCGTTGCAAAAA 180
consensus_1404#1      AAATCAAAACCAGACAAGATATTGTTATACTAGTTTTTTGGATTTTCATCGTTGCAAAAA 129
                      ***********************   **********************************

consensus_1404#0      ACGACATAGTGAAGATTATGAAGCATGTCAATATTTCAAAAAAGTATATAATGCAATGTG 240
consensus_1404#1      ACGACATAGTGAAGATTATGAAGCATGTCAATATTTCAAAAAAGTATATAATGCAATGTG 189
                      ************************************************************

consensus_1404#0      CCCAAATGCTTGGATAGAAAAATGGAATGAACAGATTGAAAACGGAGTGTTTCCAGGAAA 300
consensus_1404#1      CCCAAATGCTTGGATAGAAAAATGGAATGAACAGATTGAAAACGGAGTGTTTCCAGGAAA 249
                      ************************************************************

consensus_1404#0      TATATAATACAAGAGGCATCAAATTATAACTGCCTCTATAGTGATATTGTTTACATAATA 360
consensus_1404#1      TATATAATACAAGAGGCATCAAATTATAACTGCCTCTATAGTGATATTGTTTACATAATA 309
                      ************************************************************

consensus_1404#0      ACAGGATTTTACAATTTTAAAGTATCAAATAATTCCTGTTTGTAAAATAATATTTAATAA 420
consensus_1404#1      ACAGGATTTTACAATTTTAAAGTATCAAATAATTCCTGTTTGTAAAATAATATTTAATAA 369
                      ************************************************************

consensus_1404#0      ATTGATCATAGTTTAATTCTTATTTAGTTTTATTAATTAATATTTTTTTTATTTTACTGC 480
consensus_1404#1      ATTGATCATAGTTTAAAAAAAAAAAAAA-------------------------------- 397
                      ****************     *   *                                  

consensus_1404#0      AATTNNTAAATACAAATAGAAATTTAAATATTATATTTTATTATTAAATTTTGTAAAAAT 540
consensus_1404#1      ------------------------------------------------------------
                                                                                  

consensus_1404#0      GTAAATTAATATTTCTAATCCCTATCCTCAACATA 575
consensus_1404#1      -----------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)