cluster # 1413

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Apis mellifera
cluster # 1413 cluster # 1413 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1413#0 length = 563 sequences # 1

consensus_1413#1 length = 462 sequences # 1

consensusID : consensus_1413#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 563
fasta sequence

                              [TTTGTTGATGAACTTTTATCAAATACCAATGGTTGGTGCTGACATTTGTGGATTCAATGGAAATACTACAACAAGTTTATGCAATCGTTGGATGCAACTTGGTGCATTTTATCCTTTTTCTCGTAATCATAATTCAGATGATACAATTGAACAAGATCCAGTTGCTATGGGCGATTTGGTAATAAAATCATCCAAACGTGCCCTTACGATACGTTATTGGTTGTTACCGTATTTGTATACGTTATTTTTTCGGGCACATAAATTTGGAGAAACTGTAGCGAGGCCATTATTTTTCGAGTAAATATAAATCATATACGACGCTAAATGATTACTAAATAAAAATGTTCGCATTTTTTGTTCAGATTTCCTAACGATTCGATCACATATGATATCGATGCTCAATATCTGTGGGGCAATTCTTTGATGATAATCCCAGTTTTAGAAGAAAACAAGACAGAAGTAATTGCTTATTTGCCACGTGGATTATGGTATAATTTTTATACAAAAGATTCTCTTTTCGCGCTCGGCAAATATTACACATTGAATGCACCACTCGATGTCAT]

[+] EMBL BI506537             [TTTGTTGATGAACTTTTATCAAATACCAATGGTTGGTGCTGACATTTGTGGATTCAATGGAAATACTACAACAAGTTTATGCAATCGTTGGATGCAACTTGGTGCATTTTATCCTTTTTCTCGTAATCATAATTCAGATGATACAATTGAACAAGATCCAGTTGCTATGGGCGATTTGGTAATAAAATCATCCAAACGTGCCCTTACGATACGTTATTGGTTGTTACCGTATTTGTATACGTTATTTTTTCGGGCACATAAATTTGGAGAAACTGTAGCGAGGCCATTATTTTTCGAGTAAATATAAATCATATACGACGCTAAATGATTACTAAATAAAAATGTTCGCATTTTTTGTTCAGATTTCCTAACGATTCGATCACATATGATATCGATGCTCAATATCTGTGGGGCAATTCTTTGATGATAATCCCAGTTTTAGAAGAAAACAAGACAGAAGTAATTGCTTATTTGCCACGTGGATTATGGTATAATTTTTATACAAAAGATTCTCTTTTCGCGCTCGGCAAATATTACACATTGAATGCACCACTCGATGTCAT]




>consensus_1413#0
TTTGTTGATGAACTTTTATCAAATACCAATGGTTGGTGCTGACATTTGTGGATTCAATGG
AAATACTACAACAAGTTTATGCAATCGTTGGATGCAACTTGGTGCATTTTATCCTTTTTC
TCGTAATCATAATTCAGATGATACAATTGAACAAGATCCAGTTGCTATGGGCGATTTGGT
AATAAAATCATCCAAACGTGCCCTTACGATACGTTATTGGTTGTTACCGTATTTGTATAC
GTTATTTTTTCGGGCACATAAATTTGGAGAAACTGTAGCGAGGCCATTATTTTTCGAGTA
AATATAAATCATATACGACGCTAAATGATTACTAAATAAAAATGTTCGCATTTTTTGTTC
AGATTTCCTAACGATTCGATCACATATGATATCGATGCTCAATATCTGTGGGGCAATTCT
TTGATGATAATCCCAGTTTTAGAAGAAAACAAGACAGAAGTAATTGCTTATTTGCCACGT
GGATTATGGTATAATTTTTATACAAAAGATTCTCTTTTCGCGCTCGGCAAATATTACACA
TTGAATGCACCACTCGATGTCAT

consensusID : consensus_1413#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 462
fasta sequence

                              [CGGCAAATATTACACATTGAATGCACCACTCGATGTCATACCATTAATGATTCGCGGAGGATCTATTTTGCCAGCACAAAAACCAGCCGATACTACAACAGCTAGCAGAAAAAATAATTTTGAATTATTGATTACATTGGATAATGTAAAAAAGGCAAAAGGAGAATTATATTGGGATGATGGTGATAGTTTAGATTCGTTCGAGAAGAGACAATTTGTATGGACATTTTTCAATATTGAGAATAATACTTTATCTAATTCCAAAGCAATGAAGAGTTATTTCGATGAGAAGATTATTTTAGATAAAATACAAATATGGGGAATAACATCTAATATTTCAAAAGTTTTTTTAAACGATCACGAAATACGATTCGAATATATCAAGAAGGAAAATTGCTTAAATATAAATAATTTACGAGTGGATTTGAGAGAAAATTTTTCGCTTTCTTGGAGATATGATGA]

[+] EMBL BI511107             [CGGCAAATATTACACATTGAATGCACCACTCGATGTCATACCATTAATGATTCGCGGAGGATCTATTTTGCCAGCACAAAAACCAGCCGATACTACAACAGCTAGCAGAAAAAATAATTTTGAATTATTGATTACATTGGATAATGTAAAAAAGGCAAAAGGAGAATTATATTGGGATGATGGTGATAGTTTAGATTCGTTCGAGAAGAGACAATTTGTATGGACATTTTTCAATATTGAGAATAATACTTTATCTAATTCCAAAGCAATGAAGAGTTATTTCGATGAGAAGATTATTTTAGATAAAATACAAATATGGGGAATAACATCTAATATTTCAAAAGTTTTTTTAAACGATCACGAAATACGATTCGAATATATCAAGAAGGAAAATTGCTTAAATATAAATAATTTACGAGTGGATTTGAGAGAAAATTTTTCGCTTTCTTGGAGATATGATGA]




>consensus_1413#1
CGGCAAATATTACACATTGAATGCACCACTCGATGTCATACCATTAATGATTCGCGGAGG
ATCTATTTTGCCAGCACAAAAACCAGCCGATACTACAACAGCTAGCAGAAAAAATAATTT
TGAATTATTGATTACATTGGATAATGTAAAAAAGGCAAAAGGAGAATTATATTGGGATGA
TGGTGATAGTTTAGATTCGTTCGAGAAGAGACAATTTGTATGGACATTTTTCAATATTGA
GAATAATACTTTATCTAATTCCAAAGCAATGAAGAGTTATTTCGATGAGAAGATTATTTT
AGATAAAATACAAATATGGGGAATAACATCTAATATTTCAAAAGTTTTTTTAAACGATCA
CGAAATACGATTCGAATATATCAAGAAGGAAAATTGCTTAAATATAAATAATTTACGAGT
GGATTTGAGAGAAAATTTTTCGCTTTCTTGGAGATATGATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1413#0      TTTGTTGATGAACTTTTATCAAATACCAATGGTTGGTGCTGACATTTGTGGATTCAATGG 60
consensus_1413#1      ---------------------------------------CGGCAAATATT-ACACATTGA 20
                                                              * **  * *  *  ** ** 

consensus_1413#0      AAATACTACAACAAGTTTATGCAATCGTTGGATGCAACTTGGTGCATTTTATCCTTTTTC 120
consensus_1413#1      ATGCACCACT-CGATGTCATACCATTAATGATTCGCGGAGGATCTATTTTGCCAG----- 74
                      *   ** **  * *  * ** * **   **  *       * *  *****  *       

consensus_1413#0      TCGTAATCATAATTCAGATGATACAATTGA-ACAAGATCCAGTTGCTATGGGCGATTTGG 179
consensus_1413#1      -CACAAAAACCAGCC-GATACTACAACAGCTAGCAGAAAAAATAATTTTGAATTATTGAT 132
                       *  **  *  *  * ***  *****  *  *  ***   * *   * **    ***   

consensus_1413#0      TA-ATAAAATCATCCAAACGTGCCCTTACGATACGTTATTGGTTGTTACCGTATTTGTAT 238
consensus_1413#1      TACATTGGATAATGTAAAAAAGGCAAAAGGAGA-ATTAT--ATTGGGATGATGGTGATAG 189
                      ** **   ** **  ***   * *   * ** *  ****   ***  *   *  *  ** 

consensus_1413#0      ACGTTATTTTTTCGGGCACATAAATTTGGAGAAACTGTAGCGAGGCCATTATTTTTCGAG 298
consensus_1413#1      TTTAGATTCGTTCGAGAAGA--------GACAATTTGTATGGA------CATTTTTC--- 232
                           ***  **** * * *        ** **  ****  **       *******   

consensus_1413#0      TAAATATAAATCATATACGACGCTAAATGATTACTAAATAAAAATGTTCGCATTTTTTGT 358
consensus_1413#1      --AATATTGA--GAATAATACTTTATCTAATTCCAAAGCAATGAAGAGTTATTTCGATGA 288
                        *****  *    ***  **  **  * *** * **  **  * *      **   ** 

consensus_1413#0      TCAGATTTCCTAACGATTCGAT-CACATATGAT-ATCGATGCTCAATATCTGTGGGGCAA 416
consensus_1413#1      GAAGATTATTTTA-GATAAAATACAAATATGGGGAATAACATCTAATATTTCAAAAGTT- 346
                        *****   * * ***   ** ** *****   *   *     ***** *     *   

consensus_1413#0      TTCTTTGATGATAATCCCAGTT--TTAGAAGAAAACAAGACAGAAGTAATTGCTTATTTG 474
consensus_1413#1      TTTTTAAACGATCACGAAATACGATTCGAATATATCAAGAAGGAA--AATTGCTTAAATA 404
                      ** **  * *** *    *     ** *** * * *****  ***  *********  * 

consensus_1413#0      CCACGTGGATTATGGTATAATTTTTATACAAAAGATTCTCTTTTCGCGCTCGGCAAATAT 534
consensus_1413#1      T-AAATAATTTACGA-GTGGATTTGAGAGAAAATTTTTCGCTTT----CTTGG-AGATAT 457
                        *  *   *** *   *   *** * * ****  **    ***    ** ** * ****

consensus_1413#0      TACACATTGAATGCACCACTCGATGTCAT 563
consensus_1413#1      GATGA------------------------ 462
                       *

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)