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Apis mellifera
cluster # 1530 cluster # 1530       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1530#0 length = 567 sequences # 1  
 consensus_1530#1 length = 519 sequences # 1  
consensusID : consensus_1530#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 567
fasta sequence 
                              [GAGAGGAACAGAATCAGATAGAATTTAACAAGGAGTGGCTCGGTGGTGTTCTAAAGGAATTTCACAAAGAACCGGTCACGATAAGCGAATGTAACGTAAGTCCCGGCTGTACGAGTAATGAAAGCGCGCTCAGTGATATTATGCGTCTTAAAATCAAGTATATGTTGAACGACACGAATACTACGCAAGACTTGTCCGTAATCGTGAAAGAGCTTCCAAGAGATCCGATAAATCGTTTTTTTGTTATCGAAGGCCAATTTGATCTTCGGGAAATTAAATTTTATACACAGGTTATGCCCGACTTAAAGGAATTTCAAAAGAAACAACTAACATCTCAAGGAAATAAATCGGACATCGAAATTCTTCTGTCAGTTCCAGTATGCTACTTTGCAGATTATACACCAGCTGATGAATCAGGCGATAAACCCACAAAACCAGAATCAATTTTGGTGTTACAAGACCTTCGTGATTCTGATTTTCGAAATATTAAATTTCGTGAAGGAATGACATACGATCAAACTAAAATTGCATTAGAAGCTATAGCACGTATACATGCACACTCTTTGG]

[+] EMBL BI509253             [GAGAGGAACAGAATCAGATAGAATTTAACAAGGAGTGGCTCGGTGGTGTTCTAAAGGAATTTCACAAAGAACCGGTCACGATAAGCGAATGTAACGTAAGTCCCGGCTGTACGAGTAATGAAAGCGCGCTCAGTGATATTATGCGTCTTAAAATCAAGTATATGTTGAACGACACGAATACTACGCAAGACTTGTCCGTAATCGTGAAAGAGCTTCCAAGAGATCCGATAAATCGTTTTTTTGTTATCGAAGGCCAATTTGATCTTCGGGAAATTAAATTTTATACACAGGTTATGCCCGACTTAAAGGAATTTCAAAAGAAACAACTAACATCTCAAGGAAATAAATCGGACATCGAAATTCTTCTGTCAGTTCCAGTATGCTACTTTGCAGATTATACACCAGCTGATGAATCAGGCGATAAACCCACAAAACCAGAATCAATTTTGGTGTTACAAGACCTTCGTGATTCTGATTTTCGAAATATTAAATTTCGTGAAGGAATGACATACGATCAAACTAAAATTGCATTAGAAGCTATAGCACGTATACATGCACACTCTTTGG]




>consensus_1530#0
GAGAGGAACAGAATCAGATAGAATTTAACAAGGAGTGGCTCGGTGGTGTTCTAAAGGAAT
TTCACAAAGAACCGGTCACGATAAGCGAATGTAACGTAAGTCCCGGCTGTACGAGTAATG
AAAGCGCGCTCAGTGATATTATGCGTCTTAAAATCAAGTATATGTTGAACGACACGAATA
CTACGCAAGACTTGTCCGTAATCGTGAAAGAGCTTCCAAGAGATCCGATAAATCGTTTTT
TTGTTATCGAAGGCCAATTTGATCTTCGGGAAATTAAATTTTATACACAGGTTATGCCCG
ACTTAAAGGAATTTCAAAAGAAACAACTAACATCTCAAGGAAATAAATCGGACATCGAAA
TTCTTCTGTCAGTTCCAGTATGCTACTTTGCAGATTATACACCAGCTGATGAATCAGGCG
ATAAACCCACAAAACCAGAATCAATTTTGGTGTTACAAGACCTTCGTGATTCTGATTTTC
GAAATATTAAATTTCGTGAAGGAATGACATACGATCAAACTAAAATTGCATTAGAAGCTA
TAGCACGTATACATGCACACTCTTTGG

consensusID : consensus_1530#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 519
fasta sequence 
                              [CGAAATATTAAATTTCGTGAAGGAATGACATACGATCAAACTAAAATTGCATTAGAAGCTATAGCACGTATACATGCACACTCTTTGGCAATGAAAGTTGTAGAAGGAGAGCCTCTGTCCGAACGTTATCCGTTTCTCTTCCAAACAGCAAAAGCAACAAATTCGTATCAACAATTGGTTGAACGTGGTTTACCGCAACTTGCCAAATTTTTGAAAAGTACACCAGGATTGGAAGCGATACTCGAGGCCTTAGTTATCCTAAGACCTAGGACTAAACATATAATATCTGCACTTCTTGCACCAGAAGGCCCGCTAGCGTTGATCACGCATACAGACTTTTGGTGTAATAATTTACTTTTCAAGGAAGGACCCTCTGGTTTCGAATGTTGTATCCTNNNTTGGCAAATGGTTACTTACAGTAGACCGACTAACGACATTGCTCTGTTATTAGTAAGCTCATTGCCAACCGAACTACGCCGAAAGCATACGGAAACTTTCCTCGATATTTATTGGGATGCG]

[+] EMBL BI515188             [CGAAATATTAAATTTCGTGAAGGAATGACATACGATCAAACTAAAATTGCATTAGAAGCTATAGCACGTATACATGCACACTCTTTGGCAATGAAAGTTGTAGAAGGAGAGCCTCTGTCCGAACGTTATCCGTTTCTCTTCCAAACAGCAAAAGCAACAAATTCGTATCAACAATTGGTTGAACGTGGTTTACCGCAACTTGCCAAATTTTTGAAAAGTACACCAGGATTGGAAGCGATACTCGAGGCCTTAGTTATCCTAAGACCTAGGACTAAACATATAATATCTGCACTTCTTGCACCAGAAGGCCCGCTAGCGTTGATCACGCATACAGACTTTTGGTGTAATAATTTACTTTTCAAGGAAGGACCCTCTGGTTTCGAATGTTGTATCCTNNNTTGGCAAATGGTTACTTACAGTAGACCGACTAACGACATTGCTCTGTTATTAGTAAGCTCATTGCCAACCGAACTACGCCGAAAGCATACGGAAACTTTCCTCGATATTTATTGGGATGCG]




>consensus_1530#1
CGAAATATTAAATTTCGTGAAGGAATGACATACGATCAAACTAAAATTGCATTAGAAGCT
ATAGCACGTATACATGCACACTCTTTGGCAATGAAAGTTGTAGAAGGAGAGCCTCTGTCC
GAACGTTATCCGTTTCTCTTCCAAACAGCAAAAGCAACAAATTCGTATCAACAATTGGTT
GAACGTGGTTTACCGCAACTTGCCAAATTTTTGAAAAGTACACCAGGATTGGAAGCGATA
CTCGAGGCCTTAGTTATCCTAAGACCTAGGACTAAACATATAATATCTGCACTTCTTGCA
CCAGAAGGCCCGCTAGCGTTGATCACGCATACAGACTTTTGGTGTAATAATTTACTTTTC
AAGGAAGGACCCTCTGGTTTCGAATGTTGTATCCTNNNTTGGCAAATGGTTACTTACAGT
AGACCGACTAACGACATTGCTCTGTTATTAGTAAGCTCATTGCCAACCGAACTACGCCGA
AAGCATACGGAAACTTTCCTCGATATTTATTGGGATGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1530#0      GAGAGGAACAGAATCAGATAGAATTTAACAAGGAGTGGCTCGGTGGTGTTCTAAAGGAAT 60
consensus_1530#1      --------CGAAAT--ATTAAATTTCGTGAAGGAATGACATACGATCAAACTAAA---AT 47
                              *  ***    ** * **    ***** ** *           *****   **

consensus_1530#0      TTCACAAAGAACCGGTCACGATAAGCGAATGTAACGTAAGTCCCGGCTGTACGAGTAATG 120
consensus_1530#1      TGCATTAGAA----GCTATAGCACGTATACATG-CACACTCTTTGGCAATGAAAGTTGTA 102
                      * **  *  *    *  *    * *   *  *  *  *      ***  *   ***  * 

consensus_1530#0      AAAGCGCGCTCAGTGATATTATGCGTCTTAAAATCAAGTATATGTTGAACGACACGAATA 180
consensus_1530#1      GAAGG------AGAGCCTCTGTCCGAACGTTATCCGTTTCTCTTCCAAACAGCAAAAGCA 156
                       ***       ** *    * * **      *  *   * * *    ***  **  *  *

consensus_1530#0      CTACGCAAGACTTGTCCGTAATCG--TGAAAGAGCTTCCAAGAGATCCGATAAATCGTTT 238
consensus_1530#1      ACA---AATTCGTATCAACAATTGGTTGAACGTGGTTTACCGCAACTTGCCAAATTTTTG 213
                        *   **  * * **   *** *  **** * * **    *  *   *  ****  ** 

consensus_1530#0      TTTTGT-TATCGAAGGCCAATTTGATCTTCGGGAAATTAAATTTTATACACAGGTTATGC 297
consensus_1530#1      AAAAGTACACCAGGATTGGAAGCGATACTCGAGGCCTTAGTTATCCTA-AGACCTAGGAC 272
                          **  * *        *   ***  *** *   ***  * *  ** * *  *    *

consensus_1530#0      CCGACTTAAAGGAATTTCAAAAGAAACAACTAACATCTCAAGGAAATAAATCGGACATCG 357
consensus_1530#1      TAAACATATAATATCTGCACTTCTTGCACCAGAAGGCCCGCTAGCGTTGATCACGCATAC 332
                         ** ** *  *  * **       ** *  *   * *       *  ***   ***  

consensus_1530#0      AAATTCTTCTGTCAGTTCCAGTATGCTACTTTGCAGATTATACACCAGCTGATGAATCAG 417
consensus_1530#1      AGACTTTT------GGTGTAATAATTTACTTTTCA-AGGAAGGACCCTCTGGTTTCGAAT 385
                      * * * **      * *  * **   ****** ** *  *   ***  *** *     * 

consensus_1530#0      GCGATAAACCCACAAAACCAG-AATCAATTTTGGTGTTACAAG-ACCTTCGTGATTCTGA 475
consensus_1530#1      GTTGTATCCTNNNTTGGCAAATGGTTACTTACAGTAGACCGACTAACGACATTGCTCTGT 445
                      *   **  *        * *    * * **   **    * *  * *  * *   **** 

consensus_1530#0      TTTTCGAAATATTAAATTTCGTGAAGGAATGACAT-ACGATCAAACTAAAATTGCATTAG 534
consensus_1530#1      TATTAGTAAGCTCA---TTGCCAACCGAACTACGCCGAAAGCATACGGAAACTTTCCTCG 502
                      * ** * **  * *   **    *  ***  **      * ** **  *** *    * *

consensus_1530#0      AAGCTATAGCACGTATACATGCACACTCTTTGG 567
consensus_1530#1      ATATT-TATTG-GGATGCG-------------- 519
                      *   * **    * ** *


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)