cluster # 1570

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Apis mellifera
cluster # 1570 cluster # 1570 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1570#0 length = 379 sequences # 1

consensus_1570#1 length = 353 sequences # 1

consensusID : consensus_1570#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 379
fasta sequence

                              [TTTCATTCGTTTCTTCGACGATTGCAAAATTTCTGAACGTTCGGAAGAAAAGGCAAGAGAGAGACGGTCGAAGAATTCGCAATTTCGAAGACCTCTTGACGAGAGATCGAGGAACAATCGTGGCAAAGGAATTATTCGTGCGGCAACGACGCAGTGAAACAACGTACAACCTCGTTCTGCTACGGACGAATCCATATCCATATTATTTTCCTCGAGAAAAGCCAGCATCCTTGACAAATGCTCGTATAATCTAATATCGTATAATAATAAAATCGAGCAGCTTGCGTGCGTCGAGAGTTGTGGTGTGCGCGAGATTCAAATCGCGAAATCAAAAAAAAAGAAAAGAAAAAAAAAGAAAAAAAGAAAAAGAGAAAAAAAA]

[+] EMBL BI505793             [TTTCATTCGTTTCTTCGACGATTGCAAAATTTCTGAACGTTCGGAAGAAAAGGCAAGAGAGAGACGGTCGAAGAATTCGCAATTTCGAAGACCTCTTGACGAGAGATCGAGGAACAATCGTGGCAAAGGAATTATTCGTGCGGCAACGACGCAGTGAAACAACGTACAACCTCGTTCTGCTACGGACGAATCCATATCCATATTATTTTCCTCGAGAAAAGCCAGCATCCTTGACAAATGCTCGTATAATCTAATATCGTATAATAATAAAATCGAGCAGCTTGCGTGCGTCGAGAGTTGTGGTGTGCGCGAGATTCAAATCGCGAAATCAAAAAAAAAGAAAAGAAAAAAAAAGAAAAAAAGAAAAAGAGAAAAAAAA]




>consensus_1570#0
TTTCATTCGTTTCTTCGACGATTGCAAAATTTCTGAACGTTCGGAAGAAAAGGCAAGAGA
GAGACGGTCGAAGAATTCGCAATTTCGAAGACCTCTTGACGAGAGATCGAGGAACAATCG
TGGCAAAGGAATTATTCGTGCGGCAACGACGCAGTGAAACAACGTACAACCTCGTTCTGC
TACGGACGAATCCATATCCATATTATTTTCCTCGAGAAAAGCCAGCATCCTTGACAAATG
CTCGTATAATCTAATATCGTATAATAATAAAATCGAGCAGCTTGCGTGCGTCGAGAGTTG
TGGTGTGCGCGAGATTCAAATCGCGAAATCAAAAAAAAAGAAAAGAAAAAAAAAGAAAAA
AAGAAAAAGAGAAAAAAAA

consensusID : consensus_1570#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 353
fasta sequence

                              [GCACACCACAACTCTCGACGCACGCAAGCTGCTCGATTTTATTATTATACGATATAACGCTGATAAGTAAGATAAAAAAGAAAAAAAAAGACGAAGCAGAACAAATCCGTTCGGTAGGTTGTGTAGCTTGTCGAGAGAACGACACGCACCCGCTTCTCTGACTCGTAGCGCGATTAGCAATTTCGTTTCGAGTGATTCCTCTTTCTTCTGAAGGTCGATTGAAGAGAAAAAGAAGAAAGAAAGAAAGAAAGGGGGAGAAAAGCACGAAAAGAGGGGAAAAACACACATATATATATATACACGCATATATGTACACGCAAAAAGAAAAGAGAAATTGAAAAGATAAAAAAAAA]

[+] EMBL BI507808             [GCACACCACAACTCTCGACGCACGCAAGCTGCTCGATTTTATTATTATACGATATAACGCTGATAAGTAAGATAAAAAAGAAAAAAAAAGACGAAGCAGAACAAATCCGTTCGGTAGGTTGTGTAGCTTGTCGAGAGAACGACACGCACCCGCTTCTCTGACTCGTAGCGCGATTAGCAATTTCGTTTCGAGTGATTCCTCTTTCTTCTGAAGGTCGATTGAAGAGAAAAAGAAGAAAGAAAGAAAGAAAGGGGGAGAAAAGCACGAAAAGAGGGGAAAAACACACATATATATATATACACGCATATATGTACACGCAAAAAGAAAAGAGAAATTGAAAAGATAAAAAAAAA]




>consensus_1570#1
GCACACCACAACTCTCGACGCACGCAAGCTGCTCGATTTTATTATTATACGATATAACGC
TGATAAGTAAGATAAAAAAGAAAAAAAAAGACGAAGCAGAACAAATCCGTTCGGTAGGTT
GTGTAGCTTGTCGAGAGAACGACACGCACCCGCTTCTCTGACTCGTAGCGCGATTAGCAA
TTTCGTTTCGAGTGATTCCTCTTTCTTCTGAAGGTCGATTGAAGAGAAAAAGAAGAAAGA
AAGAAAGAAAGGGGGAGAAAAGCACGAAAAGAGGGGAAAAACACACATATATATATATAC
ACGCATATATGTACACGCAAAAAGAAAAGAGAAATTGAAAAGATAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1570#0      TTTCATTCGTTTCTTCGACGATTGCAAAATTTCTGAACGTTCGGAAGAAAAGGCAAGAGA 60
consensus_1570#1      GCACACCACAACTCTCGACGCACGCAAG----CTGCTCGATTTTATTATTATACGATATA 56
                         **         ******   ****     ***  ** *   *  *  *  * * * *

consensus_1570#0      GAGACGGTCGAAGAATTCGCAATTTCGAAGACCTCTTGACGAGAGATCGAGGAACAATCG 120
consensus_1570#1      ACGCTGATAAGTAAGATAAAAAA---GAAAA------AAAAAGACGAAGCAGAACAAATC 107
                        *  * *     *  *   **    *** *       *  ***    *  ******   

consensus_1570#0      TGGCAAAGGAATTATTCGTGCGGCAACGACGCAGTGAAACAACGTACAACCTCGTTCTGC 180
consensus_1570#1      CGTTCGGTAGGTTGT-------GTAGCTTGTCGAGAGAACGACACGCACCCGC-TTCTCT 159
                       *         ** *       * * *    *     *** **   ** ** * ****  

consensus_1570#0      TACGGACGAATCCATATCCATATTATTTTCCTCGAGAAAAGCCAGCATCCT-TGACAAAT 239
consensus_1570#1      GACT--CGTAGCGCGATTAGCAAT-TTCGTTTCGAGTGATTCCTCTTTCTTCTGAAGGTC 216
                       **   ** * *   **    * * **    *****  *  **    ** * ***     

consensus_1570#0      GCTCGTATAATCTAATATCGTATAATAATAAAATCGAGCAGCTTGCGTGCGTCGAGAGTT 299
consensus_1570#1      GATTGAAGAGAAAAAGAAGAAAGAAAGAAAGAAAGGGGGAGAAAA-GCACGAAAAGAGGG 275
                      * * * * *    ** *    * **  * * **  * * **     *  **   ****  

consensus_1570#0      GTGGTGTGCGCGAGATTCAAATCGCGAAATCAAAAAAAAAGAAAAGAAAAAAAAAGAAAA 359
consensus_1570#1      GAAAAACACAC-ATATATATAT-ATACACGCATATATGTACACGCAAAAAGAAAAGAGAA 333
                      *       * * * **  * **     *  ** * *   * *    **** ****** **

consensus_1570#0      AAAGAAAAAGAGAAAAAAAA 379
consensus_1570#1      ATTGAAAAGATAAAAAAAAA 353
                      *  *****    ********

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)