cluster # 1637

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Apis mellifera
cluster # 1637 cluster # 1637 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1637#0 length = 494 sequences # 1

consensus_1637#1 length = 451 sequences # 1

consensusID : consensus_1637#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 494
fasta sequence

                              [AAGGAAAAAAAAAAAAGAAATGATGAAAGAATCGAAAAAATGAGGATATAAATAAAAGGTAACTCTAATGATGATTCTATTTATATAACACTTGTTCGCGGTGCGTGGTTACCTCGTCTCGAATCCGACGATCGACGGACGGTGGAAACGAGCGGCGGAGAGAGAGAGAGAGAGAAAGGGAGAGAAAGAGAGAGAGAGAAAGAGTTTAAGTTAAGAGTAGAAAAATGACGATATCGTCGCATCGTAAGAAAGAAAGAAAAAGAGAACGCTCGCGTGCACGGTTGGTAAAACAGGAGGCGAANNNNNTGGCGACCGGGAACGGGAGAAAATCGTTGCGGTTCAATCACGTGGGAGATGTATGTGGAAAATATCGGGAGAAACTGCGGGAAAGGGGTGAAAGAACGCGATGAGAGAACCGATATGTACGATAATTCTGTAAATACGACTCTAATTGCGATTTATTATTGATTAATTACGCTCGCGATCGCGGACGA]

[+] EMBL BI513779             [AAGGAAAAAAAAAAAAGAAATGATGAAAGAATCGAAAAAATGAGGATATAAATAAAAGGTAACTCTAATGATGATTCTATTTATATAACACTTGTTCGCGGTGCGTGGTTACCTCGTCTCGAATCCGACGATCGACGGACGGTGGAAACGAGCGGCGGAGAGAGAGAGAGAGAGAAAGGGAGAGAAAGAGAGAGAGAGAAAGAGTTTAAGTTAAGAGTAGAAAAATGACGATATCGTCGCATCGTAAGAAAGAAAGAAAAAGAGAACGCTCGCGTGCACGGTTGGTAAAACAGGAGGCGAANNNNNTGGCGACCGGGAACGGGAGAAAATCGTTGCGGTTCAATCACGTGGGAGATGTATGTGGAAAATATCGGGAGAAACTGCGGGAAAGGGGTGAAAGAACGCGATGAGAGAACCGATATGTACGATAATTCTGTAAATACGACTCTAATTGCGATTTATTATTGATTAATTACGCTCGCGATCGCGGACGA]




>consensus_1637#0
AAGGAAAAAAAAAAAAGAAATGATGAAAGAATCGAAAAAATGAGGATATAAATAAAAGGT
AACTCTAATGATGATTCTATTTATATAACACTTGTTCGCGGTGCGTGGTTACCTCGTCTC
GAATCCGACGATCGACGGACGGTGGAAACGAGCGGCGGAGAGAGAGAGAGAGAGAAAGGG
AGAGAAAGAGAGAGAGAGAAAGAGTTTAAGTTAAGAGTAGAAAAATGACGATATCGTCGC
ATCGTAAGAAAGAAAGAAAAAGAGAACGCTCGCGTGCACGGTTGGTAAAACAGGAGGCGA
ANNNNNTGGCGACCGGGAACGGGAGAAAATCGTTGCGGTTCAATCACGTGGGAGATGTAT
GTGGAAAATATCGGGAGAAACTGCGGGAAAGGGGTGAAAGAACGCGATGAGAGAACCGAT
ATGTACGATAATTCTGTAAATACGACTCTAATTGCGATTTATTATTGATTAATTACGCTC
GCGATCGCGGACGA

consensusID : consensus_1637#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 451
fasta sequence

                              [TCGCGCGCGCGAGTTTTAAATCGAATAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAATGATGCATGGATAATGTACGAGCGTCGAGTTTTCATGGAAGTTTCCTCGTCCACCTCGATATTTCACGACACCGCGATCGAAAATTCTTGGGATGGAAGGATGGAGAGGAAGATGATGATGTCAATGTATGTTGTGTCACGCGCACGTCGAGCGTCGAGCTGGAAATTAATGATGTCCAGTTAAAATGAGAAAATTAAGTAATTCAACTAGAAACAGGCCGAAGATTATAAAATAGATGGAAAAGTTTTCGAACGAAGATACCCCAATAGTTGTGAGCGATATAATGAACGAGCCAAGTTTTCCAAACGGTCGAGAAAGTCGATAAAATGGAAAATGACGATATCGTCGCATCGTAAGAAAGAAAGAAAAAGAGAACGCTCGCGTGCACGGTT]

[+] EMBL BI510157             [TCGCGCGCGCGAGTTTTAAATCGAATAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAATGATGCATGGATAATGTACGAGCGTCGAGTTTTCATGGAAGTTTCCTCGTCCACCTCGATATTTCACGACACCGCGATCGAAAATTCTTGGGATGGAAGGATGGAGAGGAAGATGATGATGTCAATGTATGTTGTGTCACGCGCACGTCGAGCGTCGAGCTGGAAATTAATGATGTCCAGTTAAAATGAGAAAATTAAGTAATTCAACTAGAAACAGGCCGAAGATTATAAAATAGATGGAAAAGTTTTCGAACGAAGATACCCCAATAGTTGTGAGCGATATAATGAACGAGCCAAGTTTTCCAAACGGTCGAGAAAGTCGATAAAATGGAAAATGACGATATCGTCGCATCGTAAGAAAGAAAGAAAAAGAGAACGCTCGCGTGCACGGTT]




>consensus_1637#1
TCGCGCGCGCGAGTTTTAAATCGAATAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAATG
ATGCATGGATAATGTACGAGCGTCGAGTTTTCATGGAAGTTTCCTCGTCCACCTCGATAT
TTCACGACACCGCGATCGAAAATTCTTGGGATGGAAGGATGGAGAGGAAGATGATGATGT
CAATGTATGTTGTGTCACGCGCACGTCGAGCGTCGAGCTGGAAATTAATGATGTCCAGTT
AAAATGAGAAAATTAAGTAATTCAACTAGAAACAGGCCGAAGATTATAAAATAGATGGAA
AAGTTTTCGAACGAAGATACCCCAATAGTTGTGAGCGATATAATGAACGAGCCAAGTTTT
CCAAACGGTCGAGAAAGTCGATAAAATGGAAAATGACGATATCGTCGCATCGTAAGAAAG
AAAGAAAAAGAGAACGCTCGCGTGCACGGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1637#0      AAGGAAAAAAAAAAAAGAAATGATGAAAGAATCGAAAAAATGAGGATATAAATAAAAGGT 60
consensus_1637#1      TCGCGCGCGCGAGTTTTAAATCGAATAAAAAACAAAAAAA-AAAAAAAAAAAAAAAAAAT 59
                        *        *     ****     ** ** * ******  *  * * *** ****  *

consensus_1637#0      AACTCTAATGATGATTCTATTTATATAACACTTGTTCGCGGTGCGTGGTTACCTCGTCTC 120
consensus_1637#1      GATGC--ATG--GATAATGTACGAGCGTCGAGTTTTCATGGAAGTTTCCTCGTCCACCTC 115
                       *  *  ***  ***  * *        *   * ***  **    *   *    *  ***

consensus_1637#0      GA-ATCCGACGATCGACGGACGGTGGAAACGAGCGGCGGAGAGAGAGAGAGAGAGAAAGG 179
consensus_1637#1      GATATTTCACGACACCGCGATCGAAAATTCTTGGGATGGAAGGATGGAGAGGAAGATGAT 175
                      ** **   ****      **  *   *  *  * *  ***  **  *****  ***    

consensus_1637#0      GAGAGAAAGAGAGAGAGAGAAAGAGTTTAAGTTAAGAGTAGAAAAATGACGATATCGTCG 239
consensus_1637#1      GATGTCAATGTATGTTGTGTCAC-GCGCACGTCGAGCGTCGAGCTG-GAAATTAATGATG 233
                      **    **   *    * *  *  *   * **  ** ** **     **   **  *  *

consensus_1637#0      CATCGTAAGAAAGAAAGAAAAAGAGAACGCTCGCGTGCACGGTTGGTAAAACAGGAGGCG 299
consensus_1637#1      TCCAGTTAAAATGAGAAAATTAAGTAATTCAACTAGAAACAGGCCGAAGATTATAAAATA 293
                          ** * ** ** * **  *   **  *        ** *   * * *  *  *    

consensus_1637#0      AANNNNNTGGCGACCGGGAACGGGAGAAAATCGTTGCGGTTCAATCACGTGGGAGATGTA 359
consensus_1637#1      GATGGAAAAGTTTTCG--AACGAAGATACCCCAATAGTTGTGAGCGATATA----ATGAA 347
                       *       *    **  ****     *   *  *     * *   *  *     *** *

consensus_1637#0      TGTGGAAAATATCGGGAGAAACTGCGGGAAAGGGGTGAAA--GAACGCGATGAGAGAACC 417
consensus_1637#1      CGAGCCAAGTTTTCCAAACGGTCG-AGAAAGTCGATAAAATGGAAAATGACGATATCGTC 406
                       * *  ** * *    *      *  * **   * * ***  ***   ** ** *    *

consensus_1637#0      GATATGTACGATAATTCTGTAAATACGACTCTAATTGCGATTTATTATTGATTAATTACG 477
consensus_1637#1      GCATCGTAAGAAAGAAAGAAAAAGAGAACGCTCGC-GTGCACGGTT-------------- 451
                      *    *** ** *       *** *  ** **    * *     **              

consensus_1637#0      CTCGCGATCGCGGACGA 494
consensus_1637#1      -----------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)