cluster # 1667

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Apis mellifera
cluster # 1667 cluster # 1667 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1667#0 length = 527 sequences # 1

consensus_1667#1 length = 527 sequences # 1

consensusID : consensus_1667#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 527
fasta sequence

                              [TTTATTATTAAACAATGAGACTAAAGCTATCGGAAAAAATATATGCATACATGTGAACGACGCTTAAGGGTCGTTTCTTTCAAGTCCTCAAGGTCATTGCTCGAATTTAACTTTGCAAATTGACTGTAAAAACTCACTGCGTTTACACTCGTAATCGAAGCATGCAGCGCCACGAACGAGCGACATTGTAAACGTCGATATCTTTATTATTATATCTATTATTATACAGCGTTTTAAAATCCGAAGAAGAGTATAAAGAAGTTTGTTGTCTATCGGGTTGATTATTTTGTAAGATATAAGATCAAATCTCGAGTTTCCATTATGTTCTTGGTGATGATGCGAATAGTCTGTTGATGTAGAGAGAATGCGTTGAACAACAACAGGTGTTTTATTTATGCTTTACACAATTGAACTCTCACTATTGAATGCCGAATTAATCTCGCATCGTTGAAATTGAACAAGATGTTCTAGTTATTCTACAGAATTATTTAATTTCTAATATTTCATCGATTTGCAAAAGTTGTTTT]

[+] EMBL BI513585             [TTTATTATTAAACAATGAGACTAAAGCTATCGGAAAAAATATATGCATACATGTGAACGACGCTTAAGGGTCGTTTCTTTCAAGTCCTCAAGGTCATTGCTCGAATTTAACTTTGCAAATTGACTGTAAAAACTCACTGCGTTTACACTCGTAATCGAAGCATGCAGCGCCACGAACGAGCGACATTGTAAACGTCGATATCTTTATTATTATATCTATTATTATACAGCGTTTTAAAATCCGAAGAAGAGTATAAAGAAGTTTGTTGTCTATCGGGTTGATTATTTTGTAAGATATAAGATCAAATCTCGAGTTTCCATTATGTTCTTGGTGATGATGCGAATAGTCTGTTGATGTAGAGAGAATGCGTTGAACAACAACAGGTGTTTTATTTATGCTTTACACAATTGAACTCTCACTATTGAATGCCGAATTAATCTCGCATCGTTGAAATTGAACAAGATGTTCTAGTTATTCTACAGAATTATTTAATTTCTAATATTTCATCGATTTGCAAAAGTTGTTTT]




>consensus_1667#0
TTTATTATTAAACAATGAGACTAAAGCTATCGGAAAAAATATATGCATACATGTGAACGA
CGCTTAAGGGTCGTTTCTTTCAAGTCCTCAAGGTCATTGCTCGAATTTAACTTTGCAAAT
TGACTGTAAAAACTCACTGCGTTTACACTCGTAATCGAAGCATGCAGCGCCACGAACGAG
CGACATTGTAAACGTCGATATCTTTATTATTATATCTATTATTATACAGCGTTTTAAAAT
CCGAAGAAGAGTATAAAGAAGTTTGTTGTCTATCGGGTTGATTATTTTGTAAGATATAAG
ATCAAATCTCGAGTTTCCATTATGTTCTTGGTGATGATGCGAATAGTCTGTTGATGTAGA
GAGAATGCGTTGAACAACAACAGGTGTTTTATTTATGCTTTACACAATTGAACTCTCACT
ATTGAATGCCGAATTAATCTCGCATCGTTGAAATTGAACAAGATGTTCTAGTTATTCTAC
AGAATTATTTAATTTCTAATATTTCATCGATTTGCAAAAGTTGTTTT

consensusID : consensus_1667#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 527
fasta sequence

                              [TGATAATAAACTTTTGTCGATAATTGCCTGTACAATAGCAAAACGTTGCAAATCTATTTAACATATAATCCCATGAACAGTCGCGCATAGAATAAATTCGATGCACTATGGAATATCGAAAATCCTCTCGATTAAGATTAAGATCGTATTACTTATCTTTTCCTCTTCCTTCAAATTCAAATTAATTTGCTTTTTCATTCTCTGTTAGATCCTCCGATAGACTCTCTTAGTGTCGAAACGAGCGTTCTCATAAGACAGGCAGAAACACACTCGCAAACTTATCTACTATGCACTGTAAACCGCACTCATTGGCGTTTAACAAGTGTAAACAACGAATAACACGTTTATTGGATTCCTATATATCGAATTATTTTGCAACTAAATATTTTGACACCGAGAGAGTCAAATAATCTTACTGAGATACTTATCTGTATCTGAGTATCACTTGTCGTTAAAACCTTTTTTGTTTATAAAAAAAACAACTTTTGCAAATCGATGAAATATTAGAAATTAAATAATTCTGTAGA]

[+] EMBL BI513152             [TGATAATAAACTTTTGTCGATAATTGCCTGTACAATAGCAAAACGTTGCAAATCTATTTAACATATAATCCCATGAACAGTCGCGCATAGAATAAATTCGATGCACTATGGAATATCGAAAATCCTCTCGATTAAGATTAAGATCGTATTACTTATCTTTTCCTCTTCCTTCAAATTCAAATTAATTTGCTTTTTCATTCTCTGTTAGATCCTCCGATAGACTCTCTTAGTGTCGAAACGAGCGTTCTCATAAGACAGGCAGAAACACACTCGCAAACTTATCTACTATGCACTGTAAACCGCACTCATTGGCGTTTAACAAGTGTAAACAACGAATAACACGTTTATTGGATTCCTATATATCGAATTATTTTGCAACTAAATATTTTGACACCGAGAGAGTCAAATAATCTTACTGAGATACTTATCTGTATCTGAGTATCACTTGTCGTTAAAACCTTTTTTGTTTATAAAAAAAACAACTTTTGCAAATCGATGAAATATTAGAAATTAAATAATTCTGTAGA]




>consensus_1667#1
TGATAATAAACTTTTGTCGATAATTGCCTGTACAATAGCAAAACGTTGCAAATCTATTTA
ACATATAATCCCATGAACAGTCGCGCATAGAATAAATTCGATGCACTATGGAATATCGAA
AATCCTCTCGATTAAGATTAAGATCGTATTACTTATCTTTTCCTCTTCCTTCAAATTCAA
ATTAATTTGCTTTTTCATTCTCTGTTAGATCCTCCGATAGACTCTCTTAGTGTCGAAACG
AGCGTTCTCATAAGACAGGCAGAAACACACTCGCAAACTTATCTACTATGCACTGTAAAC
CGCACTCATTGGCGTTTAACAAGTGTAAACAACGAATAACACGTTTATTGGATTCCTATA
TATCGAATTATTTTGCAACTAAATATTTTGACACCGAGAGAGTCAAATAATCTTACTGAG
ATACTTATCTGTATCTGAGTATCACTTGTCGTTAAAACCTTTTTTGTTTATAAAAAAAAC
AACTTTTGCAAATCGATGAAATATTAGAAATTAAATAATTCTGTAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1667#0      TTTATTATTAAACAATGAGACTAAAGCTATCGGAAAAAATATATGCATACATGTGAACGA 60
consensus_1667#1      ---------------TGATAATAAACTTTTGTCGATAATTGCCTGTACAATAGCAAA--A 43
                                     *** * ****  * *    * ** *   ** * *   *  **  *

consensus_1667#0      CGCTTAAGGGTCGTTTCTTTCAAGTCCTCAAGGTCATT---GCTCGAATTTAACTT--TG 115
consensus_1667#1      CGTTGCAAATCTATTTAACATATAATCCCATGAACAGTCGCGCATAGAATAAATTCGATG 103
                      ** *  *      ***     *    * ** *  ** *   **    * * ** *   **

consensus_1667#0      CAA-ATTGACTGTAAAAACTCACTGCGTTTACACTCGTAATCGAAGCATGCAGCGCCACG 174
consensus_1667#1      CACTATGGAATATCGAAAATCCTCTCGATTAAGATTAAGATCGTATTACTTATCTTTTCC 163
                      **  ** ** * *  *** **    ** ***   *    **** *  *   * *    * 

consensus_1667#0      AACGAGCGACATTGTAAAC--GTCGATATCTTTATTATTATATCTATTATT--ATACAGC 230
consensus_1667#1      TCTTCCTTCAAATTCAAATTAATTTGCTTTTTCATTCTCTGTTAGATCCTCCGATAGACT 223
                                * *  ***    *     * ** *** *    *  **  *   *** *  

consensus_1667#0      GTTTTAAAATCCGAAGAAGAGTATAAAGAAGTTTGTTGTCTATCGGGTTGATTATTTTGT 290
consensus_1667#1      CTCTTAGTGTCGAAACGAGCGTTCTCATAAGACAGGCAGA-AACACACTCGCAAACTTAT 282
                       * ***   **  **  ** **    * ***   *      * *    *    *  ** *

consensus_1667#0      AAGATATAAGATCAAATCTCGAGTTTCCATTATGTTCTTGGTGATGATG-CGAATAGTCT 349
consensus_1667#1      CTACTATGCACTGTAAACCGCACTCATTGGCGTTTAACAAGTGTAAACAACGAATAACAC 342
                          ***    *  ** *   * *        * *     ***   *   ******    

consensus_1667#0      GTTGATGTAGAGAGAATGCGTTGAACAACA--ACAGGTGTTTTATTTATGCTTTACACAA 407
consensus_1667#1      GTTTATTGGATTCCTATATATCGAATTATTTTGCAACTAAATATTTTGACACCGAGAGAG 402
                      *** **         **   * ***  *     **  *   *  ***       * * * 

consensus_1667#0      TTGAACTCTCACTATTGAATGCCGAATTAATCTCGCATCGTTGAAATTGAACAAGATGTT 467
consensus_1667#1      TCAAATAATCTTACTGAGATACTTATCTGTATCTGAGTATCACTTGTCGTTAAAACCTTT 462
                      *  **   **    *   ** *  *  *      *  *        * *   **    **

consensus_1667#0      CTAGTTATTCTACAGAATTATTTAATTTCTAATATTTCATCGATTTGCAA--AAGTTGTT 525
consensus_1667#1      TTTGTTTATAAAAAAAACAACTT--TTGCAAATCGATGAAATATTAGAAATTAAATAATT 520
                       * ***  *  * * **  * **  ** * ***   * *   *** * **  ** *  **

consensus_1667#0      TT----- 527
consensus_1667#1      CTGTAGA 527
                       *

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)