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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_170#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 980 fasta sequence
[AAGAATTTTGCCTTAGCAATTCTTGTTGTTACCTTTGTAGTCGCGGTATTTGGGAATACCAACCTAGATCCGCCTACTCGACCTACGCGCCTTCGCCGTGAAGCTAAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGGCCACCTCATCCGCGCCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGCCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTAAACCGGAAGCTGAACCCGGCAATAATCGACCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGC-AAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGAATCTAATTTATGAAGAATATGAAGCACGTGAAATAACAAATATTTAATAAAATATTTTTATTCGATTCATTATAAAATATTGTATGTAATGCTAATTTTAAAATAAATTTGATTTTATTATTAAAAAAAAAAAAA]
[+] EMBL AMAPID73 [AAGAATTTTGCCTTAGCAATTCTTGTTGTTACCTTTGTAGTCGCGGTATTTGGGAATACCAACCTAGATCCGCCTACTCGACCTACGCGCCTTCGCCGTGAAGCTAAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGACCAGTATATATTCCACAACCAAGGCCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACTGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTTCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACTGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTTCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGCCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGACCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTAAACCGGAAGCTAAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGAATCTAATTTATGAAGAATATGAAGCACGTGAAATATCAAATATTTAATAAAATATTTTTATTCGATTCATTATAAAATATTGTATGTAATGCTAATTTTAAAATAAATTTGATTTTATTATTAAAAAAAAAAAAA]
[+] EMBL AF442148 [ TGAAGCTAAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGCCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGCCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGCCTTCGTCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGACCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTAAACCGGAAGCTGAACCCGGCAATAATCGACCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCC ]
[+] EMBL BI514627 [ GCAATAATCGGCCAATATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTCCACAACCAAGGCCACCTCATCCGCGCCTTCGCCGTAAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGCCTTCGCCGTAAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTAAACCGGAAGCTAAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGGCCACCTCATCCGCGTCTTCGCCGTGAAGCTGAATCGGAAGCTGAACCCGGCAATAATCGACCAGTATATATTCCACAACCGAGACCACCTCATCCGCGTCTTCGCCGTG AACCGGAAGCTGAATCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGAATCTAATTTATGAAGAATATGAAGCACGTGAAATAACAAATATTTAATAAAATATTTTTATTCGAT ]
consensusID : consensus_170#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence
[AGAATTGGTGTGGGTTGAATAACTATTGATAATCATGAAGAATTTTGCCTTAGCAATTCTTGTTGTTACCTTTGTAGTCGCGGTATTTGGGAATACCAACCTAGATCCGCCTACTCGACCTGCGCGCCTTCGCCGTGAAGCTAAACCGGAAGCTGAACCCGGCAATAATCGGCCAATATATATTCCACAACCAAGACCACCTCATCCGCGCCTTCGCCGTGAAGCTGAACCGAAAGCTGAACCCGGCAATAATCGGCCAATATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAATCGGAAGCTGAACCCGGCAATAATCGACCAGTATATATTCCACAACCGAGACCACCTCATCCGCGTCTTCGCCGTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCGAGACCACCTCATCCGCGTCTTCGCCGTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGAATCTAATTTATGAAGAATATGAAGCACGTGAAATAACAAATATTTAATAAAATATTTTTATTCGATTCATTATAAAATATTGTATGTAATGCTAATTTTAAAATAAATTTGATTTTATTATTATAAAATCTAAAAAAAAAAAAAAA]
[+] EMBL AMAPID14 [AGAATTGGTGTGGGTTGAATAACTATTGATAATCATGAAGAATTTTGCCTTAGCAATTCTTGTTGTTACCTTTGTAGTCGCGGTATTTGGGAATACCAACCTAGATCCGCCTACTCGACCTGCGCGCCTTCGCCGTGAAGCTAAACCGGAAGCTGAACCCGGCAATAATCGGCCAATATATATTCCACAACCAAGACCACCTCATCCGCGCCTTCGCCGTGAAGCTGAACCGAAAGCTGAACCCGGCAATAATCGGCCAATATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAATCGGAAGCTGAACCCGGCAATAATCGACCAGTATATATTCCACAACCGAGACCACCTCATCCGCGTCTTCGCCGTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCGAGACCACCTCATCCGCGTCTTCGCCGTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGAATCTAATTTATGAAGAATATGAAGCACGTGAAATAACAAATATTTAATAAAATATTTTTATTCGATTCATTATAAAATATTGTATGTAATGCTAATTTTAAAATAAATTTGATTTTATTATTATAAAATCTAAAAAAAAAAAAAAA]
consensusID : consensus_170#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence
[GAAAAATATACAATCTATGATTTAAATAAAAATCACTTATTCTGCATTGATTAATTGTTAAGAAACGATTTCATTATTTATTTTCTTCTCTTTTGTTTTTATCCAGATAATCATGAAGAATTTTGCCTTAGCAATTCTTGTTGTTACCTTTGTAGTCGCGGTATTTGGGAATACCAACCTAGATCCGCCTACTCGACCTGCGGTAAGATCAAAGACATATGTTTGAAAAAAAAATTATTTATAATTTGATAATTATTAAATATAGAATTTATAATTTAAATGGATTTAATTAAAAGATAAAAAATTCTTTTTATTCTAACATAATCAACATATGAATTAAGAAATACGGCGATAAATATTTAAATATTTATGAATTTTATTGAAGAATTAATAATATAATAGCATCCTGTAATTTCATATTAATTTTTATATATAGCGNNNTCGCCGTGAAGCTAAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGGTAAATATTTAAATATAAACTATTACAAATTTAAAAATATCATAATTTTTAACATTAAATTTTGTAATTTTTATTT]
[-] EMBL BI509768 [GAAAAATATACAATCTATGATTTAAATAAAAATCACTTATTCTGCATTGATTAATTGTTAAGAAACGATTTCATTATTTATTTTCTTCTCTTTTGTTTTTATCCAGATAATCATGAAGAATTTTGCCTTAGCAATTCTTGTTGTTACCTTTGTAGTCGCGGTATTTGGGAATACCAACCTAGATCCGCCTACTCGACCTGCGGTAAGATCAAAGACATATGTTTGAAAAAAAAATTATTTATAATTTGATAATTATTAAATATAGAATTTATAATTTAAATGGATTTAATTAAAAGATAAAAAATTCTTTTTATTCTAACATAATCAACATATGAATTAAGAAATACGGCGATAAATATTTAAATATTTATGAATTTTATTGAAGAATTAATAATATAATAGCATCCTGTAATTTCATATTAATTTTTATATATAGCGNNNTCGCCGTGAAGCTAAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGGTAAATATTTAAATATAAACTATTACAAATTTAAAAATATCATAATTTTTAACATTAAATTTTGTAATTTTTATTT]
consensusID : consensus_170#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence
[TAATCATGAAGAATTTTGCCTTAGCAATTCTTGTTGTTACCTTTGTAGTCGCGGTATTTGGGAATACCAACCTAGATCCGCCTACTCGACCTACGCGCCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGACCAGTATATATTCCACAACCAAGGCCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGGCCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGAATCTAATTTATGAAGAATATGAAGCACGTGAAATATCAAATATTTAATAAAATATTTTTATTCGATTCATTATAAAATATTGTATGTAATGCTAATTTTAAAATAAATTTGATTTTATTATTATAAAATCTAAAAAAAAAAAAA]
[+] EMBL AMAPID22 [TAATCATGAAGAATTTTGCCTTAGCAATTCTTGTTGTTACCTTTGTAGTCGCGGTATTTGGGAATACCAACCTAGATCCGCCTACTCGACCTACGCGCCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGACCAGTATATATTCCACAACCAAGGCCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGGCCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGAATCTAATTTATGAAGAATATGAAGCACGTGAAATATCAAATATTTAATAAAATATTTTTATTCGATTCATTATAAAATATTGTATGTAATGCTAATTTTAAAATAAATTTGATTTTATTATTATAAAATCTAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_170#1 ------------------------------------------------------------
consensus_170#3 ------------------------------------------------------------
consensus_170#0 AAGAATTTTGCCTTAGCAATTCTTGTTGTTACCTTTGTAGTCGCGGTATTTGGGAATACC 60
consensus_170#2 ------------------------------------------------------------
consensus_170#1 ------------------------------------------------------------
consensus_170#3 ------------------------------------------------------------
consensus_170#0 AACCTAGATCCGCCTACTCGACCTACGCGCCTTCGCCGTGAAGCTAAACCGGAAGCTGAA 120
consensus_170#2 ------------------------------------------------------------
consensus_170#1 ------------------------------------------------------------
consensus_170#3 ------------------------------------------------------------
consensus_170#0 CCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGC 180
consensus_170#2 ------------------------------------------------------------
consensus_170#1 ------------------------------------------------------------
consensus_170#3 ------------------------------------------------------------
consensus_170#0 CGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCA 240
consensus_170#2 ----------------------------GAAAAATATACAATCTATGATTTAAATAAAAA 32
consensus_170#1 ---------------------------------------------AGAATTGGTGTGGGT 15
consensus_170#3 ------------------------------------------------------------
consensus_170#0 AGGCCACCTCATCCGCGCCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGTAATAAT 300
consensus_170#2 TCACTTATTCTGCATTGATTAATTGTTAAGAAACGATTTCATTATTTATTTTCTTCTCTT 92
consensus_170#1 TGAATAAC-TATTGATAATCATGAAGAATTTTGCCTTAGCAATTCTTGTTGTTACCTTTG 74
consensus_170#3 ---------------TAATCATGAAGAATTTTGCCTTAGCAATTCTTGTTGTTACCTTTG 45
consensus_170#0 CGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCG-TCTTCGCCGTGAAGCTGA 359
consensus_170#2 TTGTTTTTATCCAGATAATCATGAAGAATTTTGCCTTAGCAATTCTTGTTGTTACCTTTG 152
* * **** * * ** * * * ** * *
consensus_170#1 --TAGTCGCGGTATTTGGGAATA-----CCAACCTAGATCCGCCTACTC-GACC------ 120
consensus_170#3 --TAGTCGCGGTATTTGGGAATA-----CCAACCTAGATCCGCCTACTC-GACC------ 91
consensus_170#0 ACCGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCA 419
consensus_170#2 --TAGTCGCGGTATTTGGGAATA-----CCAACCTAGATCCGCCTACTC-GACC------ 198
* ** * * ** **** *** ** ** * * ** ****
consensus_170#1 TGCGCGCCTTCGCCGTGAAGCTAAACCGGAAGCTGAACCCGGCAATAATCGGCCAATATA 180
consensus_170#3 TACGCGCCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATA 151
consensus_170#0 TCCGCGCCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATA 479
consensus_170#2 --TGCGGTAAGATCAAAGACATATGTTTGAAAAAAAAATTATTTATAATTTGATAAT--- 253
*** * * * *** ** ***** * * *
consensus_170#1 TATTCCACAACCAAGACCACCTCATCCGCGCCTTCGCCGTGAAGCTGAACCGAAAGCTGA 240
consensus_170#3 TATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGA 211
consensus_170#0 TATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGA 539
consensus_170#2 TATTAAATA-TAGAATTTATAATTTAAATGGATTTAATTAAAAGATAAAAAATTCTTTTT 312
**** * * * * * * ** *** * ** *
consensus_170#1 ACCCGGCAATAATCGGCCAATATATATTCCACAACCAAGACCACCT-CATCCGCGTCTTC 299
consensus_170#3 ACCCGGCAATAATCGACCAGTATATATTCCACAACCAAGGCCACCT-CATCCGCGTCTTC 270
consensus_170#0 ACCCGGTAATAATCGGCCAGTATATATTCCACAACCAAGACCACCT-CATCCGCGTCTTC 598
consensus_170#2 ATTCTAACATAATCAAC--ATATGAATTA-AGAAATACGGCGATAAATATTTAAATATTT 369
* * ****** * *** *** * ** * * * * ** * **
consensus_170#1 GCCGTGAAGCTGAATCGGAAGCTGAACCCGGCAATAATCGACCAGTATATATTCCACAAC 359
consensus_170#3 GCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAAC 330
consensus_170#0 GCCGTGAAGCTAAACCGGAAGCTGAACCCGGCAATAATCGACCAGTATATATTCCACAAC 658
consensus_170#2 AT----GAATTTTATTGAAGAATTAATAATATAATAG-CATCCTGTA---ATTTCATATT 421
* * * * * * ** **** * ** *** *** ** *
consensus_170#1 CGAGACCACCTCATCCGCGTCTTCGCCGTGAA------CCGGAAGCTGAACCCGGCAATA 413
consensus_170#3 CAAGGCCACCTCATCCGCGTCTTCGCCGTGAA------GC-------------------- 364
consensus_170#0 CAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGTAATA 718
consensus_170#2 AATTTTTATATA--TAGCGNNNTCGCCGTGAA------GC-------------------- 453
* * *** ********** *
consensus_170#1 ATCGGCCAGTATATATTCCACAACCGAGACCACCTCATCCGCGTCTTCGCCGTGAA---- 469
consensus_170#3 ----------------------------------------------------TGAA---- 368
consensus_170#0 ATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCAA 778
consensus_170#2 ----------------------------------------------------TAAA---- 457
* **
consensus_170#1 -CCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCA 528
consensus_170#3 -CCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCA 427
consensus_170#0 ACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCA 838
consensus_170#2 -CCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCA 516
***********************************************************
consensus_170#1 TCCGCGAATCTAATTTATGAAGAATATGAAGCACGTGAAATAACAAATATTTAATAAAAT 588
consensus_170#3 TCCGCGAATCTAATTTATGAAGAATATGAAGCACGTGAAATATCAAATATTTAATAAAAT 487
consensus_170#0 TCCGCGAATCTAATTTATGAAGAATATGAAGCACGTGAAATAACAAATATTTAATAAAAT 898
consensus_170#2 TCCGGTAAAT--ATTTA-----AATATAAACTA-------TTACAAAT--TTAA--AAAT 558
**** ** ***** ***** ** * * ***** **** ****
consensus_170#1 ATTTTTATTCGATTCATTATAAAATATTGTATGTAATGCTAATTTTAAAATAAATTTGAT 648
consensus_170#3 ATTTTTATTCGATTCATTATAAAATATTGTATGTAATGCTAATTTTAAAATAAATTTGAT 547
consensus_170#0 ATTTTTATTCGATTCATTATAAAATATTGTATGTAATGCTAATTTTAAAATAAATTTGAT 958
consensus_170#2 ATCATAATT---TTTAACATTAAATTTTGTA----ATTTTTATTT--------------- 596
** * *** ** * ** **** ***** ** * ****
consensus_170#1 TTTATTATTATAAAATCTAAAAAAAAAAAAAAA 681
consensus_170#3 TTTATTATTATAAAATCTAAAAAAAAAAAAA-- 578
consensus_170#0 TTTATTATTAAAAAA---AAAAAAA-------- 980
consensus_170#2 ---------------------------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |