cluster # 1705

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Apis mellifera
cluster # 1705 cluster # 1705 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1705#0 length = 467 sequences # 1

consensus_1705#1 length = 324 sequences # 1

consensusID : consensus_1705#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 467
fasta sequence

                              [AAGCATGGGTGAAGGAATGTCTGTATTTGGATGATCCCAAATTTAGAATGCGTCGAGCGCATGATCAAGAGTATATCGAGAGAGTGTTTGCGGCACATTCATATGGACAAATTTTGCTACATGATTTAACTGCTGAAATGAATCAATCACGAAATTTGAGTGTGTTTACACGTGTGTATGATCAAATTTCAAAATTGAAGACTGATCTTATGGAAATGGGATCGAATCCATATATAAGGCGTGAATGTTTTACGATATGCATGTGTGGTGCATCTGGAATTGGAAAATCATATTTGACCGATTCTTTATGCAGCGAGCTCTTACGTGCGAGTCGTACTCCTGTGACAACAGGCATAAAATGTGTTGTTAATCCATTATCTGATTATTGGGATCAGTGTGATTTTCAGCCTGTTTTGTGCGTTGACGATATGTGGAGTGTTGAAACATCTACTACGCTCGATAAGCAG]

[+] EMBL BI511949             [AAGCATGGGTGAAGGAATGTCTGTATTTGGATGATCCCAAATTTAGAATGCGTCGAGCGCATGATCAAGAGTATATCGAGAGAGTGTTTGCGGCACATTCATATGGACAAATTTTGCTACATGATTTAACTGCTGAAATGAATCAATCACGAAATTTGAGTGTGTTTACACGTGTGTATGATCAAATTTCAAAATTGAAGACTGATCTTATGGAAATGGGATCGAATCCATATATAAGGCGTGAATGTTTTACGATATGCATGTGTGGTGCATCTGGAATTGGAAAATCATATTTGACCGATTCTTTATGCAGCGAGCTCTTACGTGCGAGTCGTACTCCTGTGACAACAGGCATAAAATGTGTTGTTAATCCATTATCTGATTATTGGGATCAGTGTGATTTTCAGCCTGTTTTGTGCGTTGACGATATGTGGAGTGTTGAAACATCTACTACGCTCGATAAGCAG]




>consensus_1705#0
AAGCATGGGTGAAGGAATGTCTGTATTTGGATGATCCCAAATTTAGAATGCGTCGAGCGC
ATGATCAAGAGTATATCGAGAGAGTGTTTGCGGCACATTCATATGGACAAATTTTGCTAC
ATGATTTAACTGCTGAAATGAATCAATCACGAAATTTGAGTGTGTTTACACGTGTGTATG
ATCAAATTTCAAAATTGAAGACTGATCTTATGGAAATGGGATCGAATCCATATATAAGGC
GTGAATGTTTTACGATATGCATGTGTGGTGCATCTGGAATTGGAAAATCATATTTGACCG
ATTCTTTATGCAGCGAGCTCTTACGTGCGAGTCGTACTCCTGTGACAACAGGCATAAAAT
GTGTTGTTAATCCATTATCTGATTATTGGGATCAGTGTGATTTTCAGCCTGTTTTGTGCG
TTGACGATATGTGGAGTGTTGAAACATCTACTACGCTCGATAAGCAG

consensusID : consensus_1705#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 324
fasta sequence

                              [TGCCGTTCCAGAAGCTCCCAATGCTGAAGCGGAGGAGGCAAGTGCTTGGGTATCCATTATTTATAATGGTGTGTGTAATATGCTTAATGTGGCTGCTCAAAAACCGAAACAATTTAAAGATTGGGTAAAATTAGCTACTGTAGATTTTAGTAATAATTGTAGAGGTAGTAATCAGGTATTTGTATTTTTCAAGAATACATTTGAAGTGTTGAAGAAAATGTGGGGTTATGTATTTTGTCAGAGTAATCCTGCAGCGCGTTTGTTGAAAGCTGTGAATGACGAGCCTGAGATTTTGAAAGCATGGGTGAAGGAATGTCTGTATTT]

[+] EMBL BI513369             [TGCCGTTCCAGAAGCTCCCAATGCTGAAGCGGAGGAGGCAAGTGCTTGGGTATCCATTATTTATAATGGTGTGTGTAATATGCTTAATGTGGCTGCTCAAAAACCGAAACAATTTAAAGATTGGGTAAAATTAGCTACTGTAGATTTTAGTAATAATTGTAGAGGTAGTAATCAGGTATTTGTATTTTTCAAGAATACATTTGAAGTGTTGAAGAAAATGTGGGGTTATGTATTTTGTCAGAGTAATCCTGCAGCGCGTTTGTTGAAAGCTGTGAATGACGAGCCTGAGATTTTGAAAGCATGGGTGAAGGAATGTCTGTATTT]




>consensus_1705#1
TGCCGTTCCAGAAGCTCCCAATGCTGAAGCGGAGGAGGCAAGTGCTTGGGTATCCATTAT
TTATAATGGTGTGTGTAATATGCTTAATGTGGCTGCTCAAAAACCGAAACAATTTAAAGA
TTGGGTAAAATTAGCTACTGTAGATTTTAGTAATAATTGTAGAGGTAGTAATCAGGTATT
TGTATTTTTCAAGAATACATTTGAAGTGTTGAAGAAAATGTGGGGTTATGTATTTTGTCA
GAGTAATCCTGCAGCGCGTTTGTTGAAAGCTGTGAATGACGAGCCTGAGATTTTGAAAGC
ATGGGTGAAGGAATGTCTGTATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1705#0      AAGCATGGGTGAAGGAATGTCTGTATTTGGATGATCCCAAATTTAGAATGCGTCGAGCGC 60
consensus_1705#1      -----------------TGCC-GT-TCCAGAAGCTCCCAATGCTGAAGCGGAGGAGGCAA 41
                                       ** * ** *   ** * ******   *  *  *      **  

consensus_1705#0      ATGATCAAGAGTATATCGAGAGAGTGTTTGCGGCACATTCATATGGACAAATTTTGCTAC 120
consensus_1705#1      GTGCTTGGGTATCCAT--------TATTT-----ATAATGGTGTGTGTAA--TATGCT-- 84
                       ** *   *  *  **        * ***     * * *  * **   **  * ****  

consensus_1705#0      ATGATTTAACTGCTGAAATGAATCAATCACGAAATTTGAGTGTGTTTACACGTGTGTATG 180
consensus_1705#1      -TAATGTGGCTGCTCAAA--AACCGA--AACAATTTAAAGATTGGGTAAAATTAGCTACT 139
                       * ** *  ***** ***  ** * *  *  ** **  **  **  ** *  *   **  

consensus_1705#0      ATCAAATTTCAAAATTGAAGACTGATCTTATGGAAATGGGATCGAATCCATATATAAGGC 240
consensus_1705#1      GT-AGATTTTAGTAATAA---------TTGTAGAGGTAGT-----AATCAGGTAT----- 179
                       * * **** *  * * *         ** * **  * *      *  **  ***     

consensus_1705#0      GTGAATGTTTTACGATATGCATGTGTGGTGCATCTGGAATTGGAAAATCATAT---TTGA 297
consensus_1705#1      TTGTATTTTTCAAGA-ATACATTTGAAGTGTTGAAGAAAATGTGGGGTTATGTATTTTGT 238
                       ** ** *** * ** ** *** **  ***     * ** **     * ** *   *** 

consensus_1705#0      CCGATTCTTTATGCAGCGAGCTCTTACGTGCGAGTCGTACTCCTGTGACAACAGGCATAA 357
consensus_1705#1      CAGAGTAATCCTGCAGCGCGTTTGT---TGAAAGCTGTGAATGACGAGCCTGAGATTTTG 295
                      * ** *  *  ******* * *  *   **  **  **          *   **   *  

consensus_1705#0      AATGTGTTGTTAATCCATTATCTGATTATTGGGATCAGTGTGATTTTCAGCCTGTTTTGT 417
consensus_1705#1      AAAGCATGGGTGAAGGAATGTCTGTATTT------------------------------- 324
                      ** *  * * * *   * * ****  * *                               

consensus_1705#0      GCGTTGACGATATGTGGAGTGTTGAAACATCTACTACGCTCGATAAGCAG 467
consensus_1705#1      --------------------------------------------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)