cluster # 1717

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Apis mellifera
cluster # 1717 cluster # 1717 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1717#0 length = 512 sequences # 1

consensus_1717#1 length = 445 sequences # 1

consensusID : consensus_1717#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 512
fasta sequence

                              [ATTATTGGTTATACCGAAAACATTAGCTGTTAATGCGGCACAAGATGCTACAGATCTTGTTGCTAAATTACGTGCTTATCATAATTCCAGTCAAACGAAAGCAGATCTTGCAGATTTAAAATGGGTTGGTCTGGATTTGCTTGAAGGTACTATTAAAGATAATAAAAAAGCTGGTGTATTGGAACCAGCTATTTCAAAAATAAAATCTCTGAAATTTGCCACAGAAGCAGCAATAACAATTCTTAGAATTGATGATATGATCAAATTAGATCCAGAACGATCAAAGGATAAATCATATCGCGATGCAATGGAATCTGGTGAATTGGAAGAATAATATTAAAATATATTATTTATCCTTTTTTCTTATAATTTGTTATACTGGAAAAATTAAATTATAATTTACTACTATTTTACAATTTAGCGATAAAAAATCACTAACATTTATGTTAATTTGTTCTCATGAATGAATTTGCTAATAATAAATAAAATAAAGCTTTTACATAGAAAAAAAA]

[+] EMBL BI509223             [ATTATTGGTTATACCGAAAACATTAGCTGTTAATGCGGCACAAGATGCTACAGATCTTGTTGCTAAATTACGTGCTTATCATAATTCCAGTCAAACGAAAGCAGATCTTGCAGATTTAAAATGGGTTGGTCTGGATTTGCTTGAAGGTACTATTAAAGATAATAAAAAAGCTGGTGTATTGGAACCAGCTATTTCAAAAATAAAATCTCTGAAATTTGCCACAGAAGCAGCAATAACAATTCTTAGAATTGATGATATGATCAAATTAGATCCAGAACGATCAAAGGATAAATCATATCGCGATGCAATGGAATCTGGTGAATTGGAAGAATAATATTAAAATATATTATTTATCCTTTTTTCTTATAATTTGTTATACTGGAAAAATTAAATTATAATTTACTACTATTTTACAATTTAGCGATAAAAAATCACTAACATTTATGTTAATTTGTTCTCATGAATGAATTTGCTAATAATAAATAAAATAAAGCTTTTACATAGAAAAAAAA]




>consensus_1717#0
ATTATTGGTTATACCGAAAACATTAGCTGTTAATGCGGCACAAGATGCTACAGATCTTGT
TGCTAAATTACGTGCTTATCATAATTCCAGTCAAACGAAAGCAGATCTTGCAGATTTAAA
ATGGGTTGGTCTGGATTTGCTTGAAGGTACTATTAAAGATAATAAAAAAGCTGGTGTATT
GGAACCAGCTATTTCAAAAATAAAATCTCTGAAATTTGCCACAGAAGCAGCAATAACAAT
TCTTAGAATTGATGATATGATCAAATTAGATCCAGAACGATCAAAGGATAAATCATATCG
CGATGCAATGGAATCTGGTGAATTGGAAGAATAATATTAAAATATATTATTTATCCTTTT
TTCTTATAATTTGTTATACTGGAAAAATTAAATTATAATTTACTACTATTTTACAATTTA
GCGATAAAAAATCACTAACATTTATGTTAATTTGTTCTCATGAATGAATTTGCTAATAAT
AAATAAAATAAAGCTTTTACATAGAAAAAAAA

consensusID : consensus_1717#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 445
fasta sequence

                              [AATATGGAAGGAGAGGAAAGTTTTGATTCAAGTTTTCTTGGAGAAGCTGCTGAAGTAGTACAAGAAATGATATGTGATGATGAGCTCATTCTTATTAAAGGACCAAAAGCAAGAACAGCAAGTTCCATGATATTAAGAGGACCAAATGATTATTATTGTGATGAAATGGAACGATCTGTGCATGATGCATTATGTGCAGTAAAACGAGTTTTAGAGAGTAAAAGTGTGGTTGCAGGAGGTGGTTGTGTTGAAGCAGCACTTTCAATTTATTTAGAAAATTTTGCTACATCACTTAGTTCTCGAGAACAATTAGCTATTGCTGAATTTGCAAGATCATTATTGGTTATACCGAAAACATTAGCTGTTAATGCGGCACAAGATGCTACAGATCTTGTTGCTAAATTACGTGCTTATCATAATTCCAGTCAAACGAAAGCAGATCTTG]

[+] EMBL BI515534             [AATATGGAAGGAGAGGAAAGTTTTGATTCAAGTTTTCTTGGAGAAGCTGCTGAAGTAGTACAAGAAATGATATGTGATGATGAGCTCATTCTTATTAAAGGACCAAAAGCAAGAACAGCAAGTTCCATGATATTAAGAGGACCAAATGATTATTATTGTGATGAAATGGAACGATCTGTGCATGATGCATTATGTGCAGTAAAACGAGTTTTAGAGAGTAAAAGTGTGGTTGCAGGAGGTGGTTGTGTTGAAGCAGCACTTTCAATTTATTTAGAAAATTTTGCTACATCACTTAGTTCTCGAGAACAATTAGCTATTGCTGAATTTGCAAGATCATTATTGGTTATACCGAAAACATTAGCTGTTAATGCGGCACAAGATGCTACAGATCTTGTTGCTAAATTACGTGCTTATCATAATTCCAGTCAAACGAAAGCAGATCTTG]




>consensus_1717#1
AATATGGAAGGAGAGGAAAGTTTTGATTCAAGTTTTCTTGGAGAAGCTGCTGAAGTAGTA
CAAGAAATGATATGTGATGATGAGCTCATTCTTATTAAAGGACCAAAAGCAAGAACAGCA
AGTTCCATGATATTAAGAGGACCAAATGATTATTATTGTGATGAAATGGAACGATCTGTG
CATGATGCATTATGTGCAGTAAAACGAGTTTTAGAGAGTAAAAGTGTGGTTGCAGGAGGT
GGTTGTGTTGAAGCAGCACTTTCAATTTATTTAGAAAATTTTGCTACATCACTTAGTTCT
CGAGAACAATTAGCTATTGCTGAATTTGCAAGATCATTATTGGTTATACCGAAAACATTA
GCTGTTAATGCGGCACAAGATGCTACAGATCTTGTTGCTAAATTACGTGCTTATCATAAT
TCCAGTCAAACGAAAGCAGATCTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1717#0      ATTATTGGTTATACCGAAAACATTAGCTGTTAATGCGGCACAAGATGCTACAGATCTTGT 60
consensus_1717#1      AATAT-GGAAGGAGAGGAAAGTTTTGATTCAAGTTTTCTTGGAGAAGCTGCTGAAGTAGT 59
                      * *** **    *  * ***  ** * *   * *        *** *** * **  * **

consensus_1717#0      -TGCTAAATTACGTGCTTATCATAATTCCAGTCAAACGAAAGCAGATCTTGCAGATTTAA 119
consensus_1717#1      ACAAGAAATGATATG-TGATGATGAGCTCATTCTTATTAAAGGAC------CAAAAGCAA 112
                           **** *  ** * ** ** *   ** **  *  **** *       ** *   **

consensus_1717#0      AATGGGTTGGTCTGGATTTGCTTGAAGGTACTATTAAAGATAATAAAAAAGCTGGTGTAT 179
consensus_1717#1      GAACAGCAAGTTCCATGATATTAAGAGGACC------AAATGATTATTATTGTGATGAAA 166
                       *   *   **       *  *   ***  *      * ** ** *  *   ** ** * 

consensus_1717#0      TGGAACCAGCTATTTCAAAAATAAAATCTCTGAAATTTGCCACAGAAGCAGCAATAACAA 239
consensus_1717#1      TGGAACGATCTGTGC--ATGATGCATTATGTGCAGTAAAACG-AGTTTTAGAGAGTAAAA 223
                      ****** * ** *    *  **  * * * ** * *    *  **    **  *  * **

consensus_1717#0      TTCTTAGAATTGATGATATGATCAAATTAGATCCAGAACGATCAAAGGATAAATCATATC 299
consensus_1717#1      GTGT--GGTTGCAGGAGGTGGTTGTGTTGAAGC-AGCACTTTCAATTTATTTAGAAAATT 280
                       * *  *  *  * **  ** *    **  * * ** **  ****   **  *  * ** 

consensus_1717#0      GCGATGCAATGGAATCTGGTGAATTGGAAGAATAATATTAAAATATATTATTTATCCTTT 359
consensus_1717#1      TTGCTACATC---ACTTAGT---TCTCGAGAACAATT-----AGCTATTGCTGAATTTGC 329
                        * * **     *  * **   *    **** ***      *  ****  * *   *  

consensus_1717#0      TTTCTTATAATTTGTTATACTGGAAAAATTAAATTATAATTTACTACTA--TTTTACAAT 417
consensus_1717#1      AAGATCATTATTGGTTATACCGAAAACATTAGCTGTTAATGCGGCACAAGATGCTACAGA 389
                          * ** *** ******* * *** ****  *  ****     ** *  *  ****  

consensus_1717#0      TTAGCGATAAAAAATCACTAACATTTATGTTAATTT-GTTCTCATGAATGAATTTGCTAA 476
consensus_1717#1      TCT-TGTTGCTAAATTAC--GTGCTTATCATAATTCCAGTCAAACGAAAGCAGATCTTG- 445
                      *    * *   **** **      ****  *****    **  * *** * *  *  *  

consensus_1717#0      TAATAAATAAAATAAAGCTTTTACATAGAAAAAAAA 512
consensus_1717#1      ------------------------------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)